Wall clock time and date at job start Tue Mar 31 2020 14:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47375 * 2 1 4 4 H 1.09006 * 109.47130 * 305.00229 * 3 2 1 5 5 C 1.52999 * 109.46865 * 64.99796 * 3 2 1 6 6 C 1.53004 * 109.47208 * 185.00051 * 3 2 1 7 7 H 1.08996 * 109.46512 * 299.99922 * 6 3 2 8 8 C 1.52996 * 109.46915 * 59.99955 * 6 3 2 9 9 N 1.46499 * 109.46648 * 179.97438 * 6 3 2 10 10 S 1.65600 * 119.99533 * 145.00257 * 9 6 3 11 11 O 1.42101 * 106.40342 * 311.45356 * 10 9 6 12 12 O 1.42109 * 106.40289 * 178.53937 * 10 9 6 13 13 C 1.76200 * 107.22074 * 64.99836 * 10 9 6 14 14 C 1.38234 * 120.00103 * 90.00155 * 13 10 9 15 15 C 1.38238 * 119.99675 * 180.26081 * 14 13 10 16 16 C 1.38228 * 120.00114 * 359.50218 * 15 14 13 17 17 C 1.50698 * 120.00195 * 180.26174 * 16 15 14 18 18 C 1.50695 * 109.47279 * 270.21448 * 17 16 15 19 19 H 1.08003 * 120.00181 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00379 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00529 * 179.97438 * 20 18 17 22 22 Si 1.86809 * 119.99716 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47061 * 89.99734 * 22 20 18 24 24 H 1.48500 * 109.46819 * 209.99892 * 22 20 18 25 25 H 1.48503 * 109.47014 * 329.99714 * 22 20 18 26 26 C 1.38234 * 120.00051 * 0.47390 * 16 15 14 27 27 C 1.38235 * 119.99676 * 269.97517 * 13 10 9 28 28 H 1.09008 * 109.47306 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47411 * 299.99629 * 1 2 3 30 30 H 1.09007 * 109.47276 * 60.00186 * 1 2 3 31 31 H 1.09004 * 109.47028 * 239.99841 * 2 1 3 32 32 H 1.09001 * 109.46989 * 120.00163 * 2 1 3 33 33 H 1.08995 * 109.47184 * 300.00167 * 5 3 2 34 34 H 1.08999 * 109.47183 * 60.00474 * 5 3 2 35 35 H 1.09002 * 109.46977 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.47008 * 179.97438 * 8 6 3 37 37 H 1.08995 * 109.47331 * 300.00027 * 8 6 3 38 38 H 1.09006 * 109.47040 * 60.00056 * 8 6 3 39 39 H 0.96996 * 120.00152 * 324.99858 * 9 6 3 40 40 H 1.08002 * 119.99744 * 359.97438 * 14 13 10 41 41 H 1.08004 * 119.99577 * 179.72816 * 15 14 13 42 42 H 1.09010 * 109.46956 * 30.21065 * 17 16 15 43 43 H 1.09000 * 109.47485 * 150.21108 * 17 16 15 44 44 H 0.97002 * 120.00597 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.00294 * 179.78842 * 26 16 15 46 46 H 1.07996 * 120.00471 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1264 1.3073 6 6 3.5649 1.4442 -0.1257 7 1 3.9994 0.9052 0.7161 8 6 3.9696 0.7602 -1.4331 9 7 4.0531 2.8255 -0.1263 10 16 5.5001 3.1924 0.5905 11 8 5.4771 2.5849 1.8749 12 8 5.7041 4.5848 0.3930 13 6 6.7600 2.3699 -0.3264 14 6 7.3629 3.0051 -1.3959 15 6 8.3476 2.3577 -2.1186 16 6 8.7364 1.0791 -1.7655 17 6 9.8140 0.3756 -2.5497 18 6 9.1883 -0.3945 -3.6839 19 1 8.1174 -0.3767 -3.8228 20 6 9.9829 -1.1219 -4.5444 21 7 9.4369 -1.7944 -5.5339 22 14 11.8353 -1.1522 -4.3047 23 1 12.2003 -2.2802 -3.4105 24 1 12.5018 -1.3275 -5.6201 25 1 12.2763 0.1271 -3.6929 26 6 8.1338 0.4441 -0.6957 27 6 7.1457 1.0896 0.0240 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.5490 2.1251 1.3969 34 1 2.0699 1.5874 2.1492 35 1 1.9982 3.1542 1.3072 36 1 5.0559 0.7618 -1.5229 37 1 3.6062 -0.2674 -1.4331 38 1 3.5349 1.2993 -2.2749 39 1 3.5289 3.5250 -0.5467 40 1 7.0615 4.0054 -1.6697 41 1 8.8156 2.8524 -2.9569 42 1 10.5106 1.1117 -2.9511 43 1 10.3494 -0.3123 -1.8952 44 1 9.9960 -2.3058 -6.1395 45 1 8.4352 -0.5562 -0.4219 46 1 6.6747 0.5933 0.8596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884976364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:37 Heat of formation + Delta-G solvation = -79.029837 kcal Electronic energy + Delta-G solvation = -25978.863062 eV Core-core repulsion = 22380.357119 eV Total energy + Delta-G solvation = -3598.505943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.94019 -38.45271 -37.09578 -35.77429 -34.19956 -33.69312 -31.76480 -30.66073 -29.87345 -29.50326 -27.96801 -24.62590 -23.51616 -22.64922 -22.40376 -20.76178 -20.37203 -19.33085 -17.86989 -17.30675 -16.93479 -16.31155 -15.42770 -15.24558 -15.05322 -14.65858 -14.37136 -14.29655 -13.91822 -13.84811 -13.46169 -13.17420 -13.04644 -12.74445 -12.62181 -12.52799 -12.07239 -11.99870 -11.99692 -11.97181 -11.87754 -11.80970 -11.71281 -11.55631 -10.94465 -10.91184 -10.85215 -10.73718 -10.64138 -10.52708 -10.30146 -10.10195 -9.57181 -9.54409 -8.72739 -8.63733 -8.44394 -6.21578 -4.22824 0.51198 1.26400 1.72911 3.06092 3.18981 3.27720 3.29094 3.74574 4.08233 4.28819 4.37060 4.47576 4.64206 4.69650 5.02116 5.06231 5.09627 5.15379 5.18529 5.19948 5.34307 5.36827 5.47389 5.48761 5.56825 5.73168 5.74977 5.76654 5.78916 5.81701 5.83631 5.87477 6.05325 6.15084 6.15196 6.23632 6.24339 6.32639 6.43941 6.68904 6.70128 6.81221 6.89883 7.28424 7.29453 7.51441 8.31360 8.81141 9.37321 10.90794 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014938 B = 0.003422 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.980739 B = 8181.155354 C = 9506.001035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.093 4.093 4 H 0.076 0.924 5 C -0.151 4.151 6 C 0.151 3.849 7 H 0.092 0.908 8 C -0.181 4.181 9 N -1.112 6.112 10 S 2.697 3.303 11 O -0.965 6.965 12 O -0.969 6.969 13 C -0.699 4.699 14 C -0.020 4.020 15 C -0.143 4.143 16 C 0.031 3.969 17 C 0.005 3.995 18 C -0.518 4.518 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.895 5.895 22 Si 0.878 3.122 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.265 1.265 26 C -0.143 4.143 27 C -0.023 4.023 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.415 0.585 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.266 0.734 45 H 0.129 0.871 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.689 6.551 11.234 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.113 4.113 4 H 0.095 0.905 5 C -0.208 4.208 6 C 0.044 3.956 7 H 0.110 0.890 8 C -0.240 4.240 9 N -0.871 5.871 10 S 2.789 3.211 11 O -0.955 6.955 12 O -0.959 6.959 13 C -0.789 4.789 14 C -0.040 4.040 15 C -0.162 4.162 16 C 0.031 3.969 17 C -0.032 4.032 18 C -0.556 4.556 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.533 5.533 22 Si 0.705 3.295 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.189 1.189 26 C -0.162 4.162 27 C -0.042 4.042 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.250 0.750 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.147 0.853 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.431 6.823 11.909 19.916 hybrid contribution 1.082 -0.342 -0.952 1.481 sum -13.349 6.482 10.958 18.447 Atomic orbital electron populations 1.21808 0.95776 1.01585 1.01805 1.21667 0.96008 0.95729 1.02827 1.21407 0.93780 0.97039 0.99065 0.90521 1.21895 1.01085 1.00798 0.97041 1.20884 0.94997 0.80783 0.98897 0.89038 1.22475 1.03292 1.01071 0.97145 1.55598 1.38528 1.16199 1.76747 1.01561 0.72665 0.73100 0.73736 1.93557 1.86486 1.78432 1.37009 1.93564 1.85400 1.30440 1.86515 1.30376 1.23319 1.08993 1.16171 1.20754 0.93508 0.98262 0.91427 1.21207 0.98896 0.95570 1.00480 1.20678 0.93343 0.92228 0.90679 1.18991 0.92839 0.95883 0.95496 1.20797 0.95779 1.28995 1.10029 0.90685 1.24974 0.98699 0.94629 0.94681 1.69878 1.35945 1.31034 1.16407 0.86806 0.85732 0.79166 0.77834 1.20023 1.21081 1.18916 1.21205 0.97849 1.00464 0.96634 1.20756 0.94830 0.91857 0.96793 0.92792 0.92558 0.92820 0.91008 0.91592 0.92428 0.92243 0.92564 0.91155 0.90952 0.91870 0.75029 0.85182 0.85312 0.94818 0.95240 0.92378 0.85300 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.67 37.16 0.36 -0.66 16 2 C -0.12 -0.94 5.19 -26.73 -0.14 -1.08 16 3 C -0.09 -0.74 2.08 -90.62 -0.19 -0.93 16 4 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 5 C -0.15 -1.22 8.79 37.16 0.33 -0.89 16 6 C 0.15 1.47 2.49 -67.93 -0.17 1.30 16 7 H 0.09 0.93 7.50 -51.93 -0.39 0.54 16 8 C -0.18 -1.93 9.17 37.16 0.34 -1.59 16 9 N -1.11 -11.30 4.71 -4.89 -0.02 -11.32 16 10 S 2.70 36.42 5.72 -107.50 -0.61 35.80 16 11 O -0.96 -14.99 16.62 -57.17 -0.95 -15.94 16 12 O -0.97 -15.24 17.28 -57.17 -0.99 -16.23 16 13 C -0.70 -10.55 5.06 -39.58 -0.20 -10.75 16 14 C -0.02 -0.32 9.52 -39.58 -0.38 -0.69 16 15 C -0.14 -2.54 9.70 -39.59 -0.38 -2.92 16 16 C 0.03 0.61 5.07 -104.63 -0.53 0.08 16 17 C 0.00 0.11 4.17 -29.04 -0.12 -0.01 16 18 C -0.52 -13.88 9.65 -34.44 -0.33 -14.22 16 19 H 0.08 2.20 7.98 -52.48 -0.42 1.78 16 20 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 21 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 22 Si 0.88 20.47 27.47 -169.99 -4.67 15.80 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 26 C -0.14 -2.50 9.70 -39.58 -0.38 -2.89 16 27 C -0.02 -0.35 8.58 -39.58 -0.34 -0.69 16 28 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.55 6.17 -51.93 -0.32 0.23 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.46 7.61 -51.93 -0.39 0.07 16 36 H 0.07 0.90 6.17 -51.93 -0.32 0.58 16 37 H 0.07 0.70 6.32 -51.93 -0.33 0.37 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.42 3.33 8.84 -34.47 -0.30 3.02 16 40 H 0.13 1.78 7.62 -52.49 -0.40 1.38 16 41 H 0.13 2.16 8.06 -52.48 -0.42 1.74 16 42 H 0.03 0.75 7.14 -51.92 -0.37 0.38 16 43 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 46 H 0.13 1.72 7.62 -52.49 -0.40 1.32 16 LS Contribution 377.72 15.07 5.69 5.69 Total: -1.00 -32.35 377.72 -10.29 -42.64 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.27 Total: 3.12 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: -2.24 Total: -34.04 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.75 Total: -36.85 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.94 Total: -32.17 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Atomic # 16 Polarization: 36.42 SS G_CDS: -0.61 Total: 35.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.35 -10.29 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884976364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.394 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds