Wall clock time and date at job start Tue Mar 31 2020 14:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47375 * 2 1 4 4 H 1.09006 * 109.47130 * 305.00229 * 3 2 1 5 5 C 1.52999 * 109.46865 * 64.99796 * 3 2 1 6 6 C 1.53004 * 109.47208 * 185.00051 * 3 2 1 7 7 H 1.08996 * 109.46512 * 299.99922 * 6 3 2 8 8 C 1.52996 * 109.46915 * 59.99955 * 6 3 2 9 9 N 1.46499 * 109.46648 * 179.97438 * 6 3 2 10 10 S 1.65600 * 119.99533 * 145.00257 * 9 6 3 11 11 O 1.42101 * 106.40342 * 311.45356 * 10 9 6 12 12 O 1.42109 * 106.40289 * 178.53937 * 10 9 6 13 13 C 1.76200 * 107.22074 * 64.99836 * 10 9 6 14 14 C 1.38234 * 120.00103 * 90.00155 * 13 10 9 15 15 C 1.38238 * 119.99675 * 180.26081 * 14 13 10 16 16 C 1.38228 * 120.00114 * 359.50218 * 15 14 13 17 17 C 1.50698 * 120.00195 * 180.26174 * 16 15 14 18 18 C 1.50695 * 109.47279 * 270.21448 * 17 16 15 19 19 H 1.08003 * 120.00181 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00379 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00529 * 179.97438 * 20 18 17 22 22 Si 1.86809 * 119.99716 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47061 * 89.99734 * 22 20 18 24 24 H 1.48500 * 109.46819 * 209.99892 * 22 20 18 25 25 H 1.48503 * 109.47014 * 329.99714 * 22 20 18 26 26 C 1.38234 * 120.00051 * 0.47390 * 16 15 14 27 27 C 1.38235 * 119.99676 * 269.97517 * 13 10 9 28 28 H 1.09008 * 109.47306 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47411 * 299.99629 * 1 2 3 30 30 H 1.09007 * 109.47276 * 60.00186 * 1 2 3 31 31 H 1.09004 * 109.47028 * 239.99841 * 2 1 3 32 32 H 1.09001 * 109.46989 * 120.00163 * 2 1 3 33 33 H 1.08995 * 109.47184 * 300.00167 * 5 3 2 34 34 H 1.08999 * 109.47183 * 60.00474 * 5 3 2 35 35 H 1.09002 * 109.46977 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.47008 * 179.97438 * 8 6 3 37 37 H 1.08995 * 109.47331 * 300.00027 * 8 6 3 38 38 H 1.09006 * 109.47040 * 60.00056 * 8 6 3 39 39 H 0.96996 * 120.00152 * 324.99858 * 9 6 3 40 40 H 1.08002 * 119.99744 * 359.97438 * 14 13 10 41 41 H 1.08004 * 119.99577 * 179.72816 * 15 14 13 42 42 H 1.09010 * 109.46956 * 30.21065 * 17 16 15 43 43 H 1.09000 * 109.47485 * 150.21108 * 17 16 15 44 44 H 0.97002 * 120.00597 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.00294 * 179.78842 * 26 16 15 46 46 H 1.07996 * 120.00471 * 0.02562 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1264 1.3073 6 6 3.5649 1.4442 -0.1257 7 1 3.9994 0.9052 0.7161 8 6 3.9696 0.7602 -1.4331 9 7 4.0531 2.8255 -0.1263 10 16 5.5001 3.1924 0.5905 11 8 5.4771 2.5849 1.8749 12 8 5.7041 4.5848 0.3930 13 6 6.7600 2.3699 -0.3264 14 6 7.3629 3.0051 -1.3959 15 6 8.3476 2.3577 -2.1186 16 6 8.7364 1.0791 -1.7655 17 6 9.8140 0.3756 -2.5497 18 6 9.1883 -0.3945 -3.6839 19 1 8.1174 -0.3767 -3.8228 20 6 9.9829 -1.1219 -4.5444 21 7 9.4369 -1.7944 -5.5339 22 14 11.8353 -1.1522 -4.3047 23 1 12.2003 -2.2802 -3.4105 24 1 12.5018 -1.3275 -5.6201 25 1 12.2763 0.1271 -3.6929 26 6 8.1338 0.4441 -0.6957 27 6 7.1457 1.0896 0.0240 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.5490 2.1251 1.3969 34 1 2.0699 1.5874 2.1492 35 1 1.9982 3.1542 1.3072 36 1 5.0559 0.7618 -1.5229 37 1 3.6062 -0.2674 -1.4331 38 1 3.5349 1.2993 -2.2749 39 1 3.5289 3.5250 -0.5467 40 1 7.0615 4.0054 -1.6697 41 1 8.8156 2.8524 -2.9569 42 1 10.5106 1.1117 -2.9511 43 1 10.3494 -0.3123 -1.8952 44 1 9.9960 -2.3058 -6.1395 45 1 8.4352 -0.5562 -0.4219 46 1 6.6747 0.5933 0.8596 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884976364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:36 Heat of formation + Delta-G solvation = -99.461854 kcal Electronic energy + Delta-G solvation = -25979.749061 eV Core-core repulsion = 22380.357119 eV Total energy + Delta-G solvation = -3599.391942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.27737 -39.23302 -38.26871 -36.97251 -35.54823 -34.92849 -33.54413 -31.97274 -30.70519 -30.16634 -29.66447 -25.31752 -25.22840 -23.77282 -23.35299 -22.30317 -21.14320 -20.37092 -19.04038 -18.98803 -18.38953 -17.30189 -16.78173 -16.46315 -15.98951 -15.90043 -15.78138 -15.33694 -15.16171 -14.68283 -14.60757 -14.46396 -14.28410 -14.08714 -13.75753 -13.61162 -13.44118 -13.30939 -13.23655 -13.16700 -12.80666 -12.62213 -12.57035 -12.47552 -12.45388 -12.27339 -12.08950 -11.96293 -11.73772 -11.53176 -11.46781 -11.40276 -11.30054 -10.82134 -10.45896 -9.95198 -9.90557 -8.33251 -6.39298 -0.61265 -0.06563 0.40253 1.35575 1.37433 1.48144 2.00373 2.32237 2.53217 2.82651 3.01351 3.31575 3.69599 3.85167 3.96034 3.99634 4.00413 4.08157 4.29435 4.35039 4.44355 4.46670 4.50315 4.68861 4.72606 4.78689 4.79569 4.85076 4.85678 4.98612 5.00460 5.06148 5.10379 5.16007 5.17410 5.23543 5.27050 5.29579 5.36347 5.45455 5.49556 5.58646 5.60678 5.78059 5.94063 6.13430 6.20012 6.66501 7.24436 8.82650 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014938 B = 0.003422 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.980739 B = 8181.155354 C = 9506.001035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.087 4.087 4 H 0.087 0.913 5 C -0.153 4.153 6 C 0.150 3.850 7 H 0.089 0.911 8 C -0.181 4.181 9 N -1.098 6.098 10 S 2.722 3.278 11 O -0.980 6.980 12 O -0.987 6.987 13 C -0.697 4.697 14 C -0.020 4.020 15 C -0.154 4.154 16 C -0.001 4.001 17 C 0.010 3.990 18 C -0.520 4.520 19 H 0.033 0.967 20 C 0.013 3.987 21 N -0.944 5.944 22 Si 0.947 3.053 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.246 1.246 26 C -0.152 4.152 27 C -0.019 4.019 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.428 0.572 40 H 0.153 0.847 41 H 0.132 0.868 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.268 0.732 45 H 0.134 0.866 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.250 7.475 12.633 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.107 4.107 4 H 0.105 0.895 5 C -0.210 4.210 6 C 0.043 3.957 7 H 0.107 0.893 8 C -0.240 4.240 9 N -0.860 5.860 10 S 2.812 3.188 11 O -0.970 6.970 12 O -0.977 6.977 13 C -0.784 4.784 14 C -0.039 4.039 15 C -0.173 4.173 16 C -0.001 4.001 17 C -0.027 4.027 18 C -0.558 4.558 19 H 0.051 0.949 20 C -0.185 4.185 21 N -0.584 5.584 22 Si 0.770 3.230 23 H -0.190 1.190 24 H -0.210 1.210 25 H -0.169 1.169 26 C -0.170 4.170 27 C -0.038 4.038 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.266 0.734 40 H 0.170 0.830 41 H 0.150 0.850 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.152 0.848 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.983 7.764 13.314 21.495 hybrid contribution 1.064 -0.608 -1.358 1.829 sum -13.919 7.156 11.956 19.695 Atomic orbital electron populations 1.21797 0.94986 1.01888 1.02159 1.21680 0.96695 0.95291 1.02693 1.21378 0.92156 0.97587 0.99587 0.89461 1.21925 1.01999 1.00522 0.96600 1.20989 0.96377 0.80067 0.98260 0.89255 1.22475 1.01644 1.01965 0.97919 1.55309 1.37160 1.17002 1.76531 1.00838 0.72638 0.72136 0.73173 1.93539 1.86817 1.78653 1.38020 1.93538 1.85898 1.31534 1.86713 1.30771 1.23322 1.08762 1.15516 1.20993 0.92681 0.99111 0.91136 1.21324 0.99650 0.95286 1.01004 1.20553 0.94163 0.93342 0.92053 1.18837 0.93719 0.95731 0.94423 1.21020 0.94079 1.29232 1.11478 0.94869 1.25909 1.04104 0.94222 0.94267 1.70031 1.38006 1.32560 1.17840 0.85710 0.79154 0.80199 0.77959 1.18982 1.20985 1.16938 1.21325 0.98363 1.00841 0.96520 1.20993 0.93947 0.91984 0.96903 0.92585 0.92100 0.92549 0.91243 0.91706 0.91097 0.92981 0.92680 0.93584 0.90132 0.91344 0.73449 0.82974 0.85006 0.94462 0.94466 0.92255 0.84814 0.82925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.67 71.98 0.70 -1.02 16 2 C -0.13 -1.66 5.19 30.59 0.16 -1.50 16 3 C -0.09 -1.20 2.08 -10.79 -0.02 -1.23 16 4 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 5 C -0.15 -2.13 8.79 71.98 0.63 -1.49 16 6 C 0.15 2.65 2.49 44.99 0.11 2.76 16 7 H 0.09 1.66 7.50 -2.39 -0.02 1.64 16 8 C -0.18 -3.67 9.17 71.98 0.66 -3.01 16 9 N -1.10 -20.06 4.71 -169.39 -0.80 -20.86 16 10 S 2.72 68.35 5.72 -56.49 -0.32 68.02 16 11 O -0.98 -28.51 16.62 -128.00 -2.13 -30.64 16 12 O -0.99 -28.99 17.28 -128.00 -2.21 -31.20 16 13 C -0.70 -20.08 5.06 22.27 0.11 -19.97 16 14 C -0.02 -0.61 9.52 22.27 0.21 -0.40 16 15 C -0.15 -5.46 9.70 22.27 0.22 -5.24 16 16 C 0.00 -0.03 5.07 -19.87 -0.10 -0.13 16 17 C 0.01 0.45 4.17 29.10 0.12 0.57 16 18 C -0.52 -28.69 9.65 25.60 0.25 -28.44 16 19 H 0.03 2.04 7.98 -2.91 -0.02 2.02 16 20 C 0.01 0.72 5.47 84.66 0.46 1.18 16 21 N -0.94 -57.18 13.96 21.45 0.30 -56.88 16 22 Si 0.95 42.18 27.47 68.60 1.88 44.06 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.25 -10.12 6.54 99.48 0.65 -9.47 16 26 C -0.15 -5.29 9.70 22.27 0.22 -5.08 16 27 C -0.02 -0.57 8.58 22.27 0.19 -0.38 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.06 0.64 6.56 -2.39 -0.02 0.62 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.07 0.95 6.17 -2.39 -0.01 0.94 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.80 6.56 -2.39 -0.02 0.78 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.77 7.61 -2.39 -0.02 0.75 16 36 H 0.05 1.16 6.17 -2.39 -0.01 1.15 16 37 H 0.08 1.48 6.32 -2.39 -0.02 1.47 16 38 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.43 5.80 8.84 -96.75 -0.85 4.95 16 40 H 0.15 3.88 7.62 -2.91 -0.02 3.86 16 41 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 42 H 0.04 1.63 7.14 -2.38 -0.02 1.61 16 43 H 0.04 1.60 7.51 -2.39 -0.02 1.58 16 44 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 46 H 0.15 3.78 7.62 -2.91 -0.02 3.76 16 Total: -1.00 -70.05 377.72 0.70 -69.35 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.06 Total: 21.52 kcal Atomic # 6 Polarization: -67.29 SS G_CDS: 3.92 Total: -63.38 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -0.50 Total: -77.74 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -4.34 Total: -61.84 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.88 Total: 44.06 kcal Atomic # 16 Polarization: 68.35 SS G_CDS: -0.32 Total: 68.02 kcal Total: -70.05 0.70 -69.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884976364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.115 kcal (2) G-P(sol) polarization free energy of solvation -70.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds