Wall clock time and date at job start Tue Mar 31 2020 14:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 H 1.09004 * 109.47332 * 305.00199 * 3 2 1 5 5 C 1.53000 * 109.47081 * 65.00307 * 3 2 1 6 6 C 1.53000 * 109.46978 * 185.00184 * 3 2 1 7 7 H 1.09004 * 109.47212 * 60.00153 * 6 3 2 8 8 C 1.52994 * 109.47248 * 300.00128 * 6 3 2 9 9 N 1.46503 * 109.47022 * 180.02562 * 6 3 2 10 10 S 1.65601 * 119.99955 * 215.00053 * 9 6 3 11 11 O 1.42098 * 106.40167 * 311.46028 * 10 9 6 12 12 O 1.42103 * 106.40054 * 178.53999 * 10 9 6 13 13 C 1.76202 * 107.21727 * 65.00183 * 10 9 6 14 14 C 1.38234 * 120.00123 * 90.00219 * 13 10 9 15 15 C 1.38230 * 119.99885 * 180.02562 * 14 13 10 16 16 C 1.38235 * 120.00326 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00236 * 179.70551 * 16 15 14 18 18 C 1.50690 * 109.47286 * 89.99933 * 17 16 15 19 19 H 1.07999 * 120.00161 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00164 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99696 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00395 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46989 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47120 * 119.99918 * 22 20 18 25 25 H 1.48497 * 109.47257 * 240.00250 * 22 20 18 26 26 C 1.38234 * 119.99814 * 359.97438 * 16 15 14 27 27 C 1.38235 * 119.99672 * 270.02049 * 13 10 9 28 28 H 1.08998 * 109.47590 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46849 * 299.99676 * 1 2 3 30 30 H 1.08994 * 109.47406 * 59.99643 * 1 2 3 31 31 H 1.09004 * 109.46849 * 240.00324 * 2 1 3 32 32 H 1.08994 * 109.47406 * 120.00357 * 2 1 3 33 33 H 1.09004 * 109.47126 * 59.99766 * 5 3 2 34 34 H 1.08998 * 109.46875 * 179.97438 * 5 3 2 35 35 H 1.08993 * 109.47263 * 300.00084 * 5 3 2 36 36 H 1.09004 * 109.47035 * 300.00134 * 8 6 3 37 37 H 1.09000 * 109.47120 * 60.00459 * 8 6 3 38 38 H 1.09005 * 109.47245 * 180.02562 * 8 6 3 39 39 H 0.96998 * 119.99825 * 35.00023 * 9 6 3 40 40 H 1.07992 * 119.99701 * 359.97438 * 14 13 10 41 41 H 1.08000 * 120.00356 * 179.97438 * 15 14 13 42 42 H 1.09003 * 109.46871 * 209.99878 * 17 16 15 43 43 H 1.09001 * 109.47017 * 329.99216 * 17 16 15 44 44 H 0.97005 * 120.00116 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.00299 * 179.97438 * 26 16 15 46 46 H 1.07997 * 120.00423 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4442 -0.1258 7 1 3.8532 0.9569 -1.0572 8 6 4.1749 0.6876 1.0558 9 7 4.0533 2.8254 -0.1252 10 16 5.3651 3.2402 -1.0469 11 8 6.3673 2.2694 -0.7782 12 8 5.5632 4.6347 -0.8582 13 6 4.9052 3.0268 -2.7344 14 6 4.3398 4.0760 -3.4347 15 6 3.9785 3.9084 -4.7584 16 6 4.1832 2.6918 -5.3820 17 6 3.7833 2.5071 -6.8232 18 6 4.9400 2.8742 -7.7165 19 1 5.8718 3.2076 -7.2840 20 6 4.8092 2.7836 -9.0861 21 7 3.6747 2.3772 -9.6128 22 14 6.2428 3.2394 -10.1935 23 1 7.3966 3.6631 -9.3604 24 1 6.6297 2.0623 -11.0121 25 1 5.8419 4.3545 -11.0885 26 6 4.7496 1.6430 -4.6821 27 6 5.1096 1.8101 -3.3579 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0700 1.5874 2.1492 34 1 1.9991 3.1540 1.3075 35 1 0.5491 2.1252 1.3970 36 1 3.8866 1.1749 1.9872 37 1 3.8116 -0.3401 1.0557 38 1 5.2613 0.6892 0.9664 39 1 3.6083 3.4970 0.4151 40 1 4.1795 5.0263 -2.9473 41 1 3.5364 4.7279 -5.3055 42 1 3.5089 1.4660 -6.9935 43 1 2.9317 3.1489 -7.0491 44 1 3.5825 2.3138 -10.5764 45 1 4.9092 0.6923 -5.1691 46 1 5.5515 0.9905 -2.8108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884976365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:42 Heat of formation + Delta-G solvation = -81.742717 kcal Electronic energy + Delta-G solvation = -25841.096145 eV Core-core repulsion = 22242.472562 eV Total energy + Delta-G solvation = -3598.623582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -38.85161 -38.64520 -37.07572 -35.73394 -34.15459 -33.68464 -31.56657 -30.58779 -30.11818 -28.95318 -27.44113 -25.48085 -23.73088 -22.84363 -22.33200 -20.90612 -19.60451 -19.45004 -17.88970 -17.31080 -16.46204 -16.32065 -15.54820 -15.26411 -15.10845 -14.78756 -14.37446 -14.34393 -14.10511 -13.86010 -13.47741 -13.11908 -12.88620 -12.69559 -12.46452 -12.38006 -12.23661 -12.12565 -11.96854 -11.90878 -11.83008 -11.70265 -11.49784 -11.29084 -11.06232 -10.93558 -10.89375 -10.86617 -10.60889 -10.49732 -10.48455 -9.79422 -9.68926 -9.54052 -8.59792 -8.54945 -8.38844 -6.18140 -4.23044 0.53417 1.32567 1.78584 3.08134 3.22654 3.30756 3.36146 3.77765 4.11413 4.36903 4.39561 4.47589 4.54608 4.66263 4.91561 5.06014 5.08545 5.15791 5.21870 5.22850 5.24742 5.29097 5.35219 5.43039 5.66744 5.68082 5.71532 5.71775 5.77274 5.81652 5.83158 5.90440 5.95232 6.04946 6.15244 6.24286 6.24494 6.32293 6.50143 6.82883 6.86435 6.90584 7.28408 7.42288 7.58005 7.77235 8.12415 8.82059 9.42083 10.91909 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.003214 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.841996 B = 8710.892604 C = 9776.601335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.099 4.099 4 H 0.080 0.920 5 C -0.152 4.152 6 C 0.155 3.845 7 H 0.086 0.914 8 C -0.176 4.176 9 N -1.115 6.115 10 S 2.696 3.304 11 O -0.963 6.963 12 O -0.969 6.969 13 C -0.703 4.703 14 C -0.022 4.022 15 C -0.145 4.145 16 C 0.027 3.973 17 C 0.039 3.961 18 C -0.517 4.517 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.145 4.145 27 C -0.026 4.026 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.414 0.586 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.263 0.737 45 H 0.128 0.872 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 -3.317 21.795 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.119 4.119 4 H 0.098 0.902 5 C -0.209 4.209 6 C 0.048 3.952 7 H 0.104 0.896 8 C -0.235 4.235 9 N -0.874 5.874 10 S 2.788 3.212 11 O -0.953 6.953 12 O -0.959 6.959 13 C -0.793 4.793 14 C -0.041 4.041 15 C -0.164 4.164 16 C 0.026 3.974 17 C 0.002 3.998 18 C -0.555 4.555 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.164 4.164 27 C -0.046 4.046 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.250 0.750 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.146 0.854 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.768 -3.200 21.848 22.591 hybrid contribution 0.059 0.392 -1.235 1.297 sum -4.710 -2.809 20.613 21.330 Atomic orbital electron populations 1.21816 0.95700 1.01621 1.01971 1.21615 0.96102 0.95676 1.02508 1.21451 0.93989 0.97134 0.99311 0.90159 1.21940 1.01519 1.00275 0.97160 1.20782 0.94099 0.80650 0.99656 0.89572 1.22432 1.02330 1.00304 0.98403 1.55744 1.52565 1.17238 1.61841 1.01634 0.72904 0.73042 0.73581 1.93557 1.55056 1.62354 1.84339 1.93562 1.84509 1.31757 1.86065 1.30335 1.21833 1.02454 1.24632 1.20760 0.92275 0.96303 0.94767 1.21246 1.02744 0.98209 0.94238 1.21112 0.87161 0.91605 0.97501 1.18543 0.97589 0.98763 0.84885 1.21010 0.98341 1.45572 0.90574 0.92231 1.25005 0.96095 0.94919 0.98142 1.69957 1.24600 1.46526 1.11889 0.86426 0.82332 0.78231 0.80452 1.19562 1.20793 1.20794 1.21241 1.01197 1.00154 0.93798 1.20786 0.93816 0.94566 0.95404 0.92794 0.92585 0.92598 0.91525 0.91434 0.92079 0.92723 0.92199 0.91862 0.91287 0.91100 0.75040 0.85311 0.85375 0.94714 0.94722 0.92687 0.85369 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.67 37.16 0.36 -0.68 16 2 C -0.12 -0.85 4.90 -26.73 -0.13 -0.98 16 3 C -0.10 -0.76 2.40 -90.62 -0.22 -0.97 16 4 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.15 -0.98 8.41 37.16 0.31 -0.67 16 6 C 0.16 1.40 2.60 -67.93 -0.18 1.22 16 7 H 0.09 0.82 7.23 -51.93 -0.38 0.44 16 8 C -0.18 -1.45 8.81 37.15 0.33 -1.13 16 9 N -1.11 -11.00 5.43 -4.89 -0.03 -11.03 16 10 S 2.70 37.07 5.65 -107.50 -0.61 36.46 16 11 O -0.96 -15.27 16.54 -57.17 -0.95 -16.21 16 12 O -0.97 -15.68 17.28 -57.17 -0.99 -16.67 16 13 C -0.70 -10.97 5.82 -39.58 -0.23 -11.20 16 14 C -0.02 -0.35 9.52 -39.59 -0.38 -0.73 16 15 C -0.15 -2.70 9.70 -39.59 -0.38 -3.08 16 16 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 17 C 0.04 0.95 5.10 -29.04 -0.15 0.80 16 18 C -0.52 -14.00 9.09 -34.45 -0.31 -14.32 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 22 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C -0.14 -2.66 9.70 -39.58 -0.38 -3.04 16 27 C -0.03 -0.42 8.90 -39.58 -0.35 -0.77 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 6.57 -51.93 -0.34 0.00 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.42 6.71 -51.93 -0.35 0.07 16 33 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 34 H 0.05 0.33 6.50 -51.93 -0.34 0.00 16 35 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 36 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 37 H 0.07 0.47 6.54 -51.93 -0.34 0.13 16 38 H 0.07 0.70 7.64 -51.93 -0.40 0.31 16 39 H 0.41 3.27 7.03 -34.47 -0.24 3.03 16 40 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 41 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 42 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 46 H 0.13 1.76 7.62 -52.49 -0.40 1.36 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -32.27 378.00 -10.61 -42.88 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.11 Total: 1.47 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: -2.34 Total: -33.96 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.71 Total: -35.75 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -1.93 Total: -32.89 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 37.07 SS G_CDS: -0.61 Total: 36.46 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.27 -10.61 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884976365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.863 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds