Wall clock time and date at job start Tue Mar 31 2020 14:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 H 1.09004 * 109.47332 * 305.00199 * 3 2 1 5 5 C 1.53000 * 109.47081 * 65.00307 * 3 2 1 6 6 C 1.53000 * 109.46978 * 185.00184 * 3 2 1 7 7 H 1.09004 * 109.47212 * 60.00153 * 6 3 2 8 8 C 1.52994 * 109.47248 * 300.00128 * 6 3 2 9 9 N 1.46503 * 109.47022 * 180.02562 * 6 3 2 10 10 S 1.65601 * 119.99955 * 215.00053 * 9 6 3 11 11 O 1.42098 * 106.40167 * 311.46028 * 10 9 6 12 12 O 1.42103 * 106.40054 * 178.53999 * 10 9 6 13 13 C 1.76202 * 107.21727 * 65.00183 * 10 9 6 14 14 C 1.38234 * 120.00123 * 90.00219 * 13 10 9 15 15 C 1.38230 * 119.99885 * 180.02562 * 14 13 10 16 16 C 1.38235 * 120.00326 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00236 * 179.70551 * 16 15 14 18 18 C 1.50690 * 109.47286 * 89.99933 * 17 16 15 19 19 H 1.07999 * 120.00161 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00164 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99696 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00395 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46989 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47120 * 119.99918 * 22 20 18 25 25 H 1.48497 * 109.47257 * 240.00250 * 22 20 18 26 26 C 1.38234 * 119.99814 * 359.97438 * 16 15 14 27 27 C 1.38235 * 119.99672 * 270.02049 * 13 10 9 28 28 H 1.08998 * 109.47590 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46849 * 299.99676 * 1 2 3 30 30 H 1.08994 * 109.47406 * 59.99643 * 1 2 3 31 31 H 1.09004 * 109.46849 * 240.00324 * 2 1 3 32 32 H 1.08994 * 109.47406 * 120.00357 * 2 1 3 33 33 H 1.09004 * 109.47126 * 59.99766 * 5 3 2 34 34 H 1.08998 * 109.46875 * 179.97438 * 5 3 2 35 35 H 1.08993 * 109.47263 * 300.00084 * 5 3 2 36 36 H 1.09004 * 109.47035 * 300.00134 * 8 6 3 37 37 H 1.09000 * 109.47120 * 60.00459 * 8 6 3 38 38 H 1.09005 * 109.47245 * 180.02562 * 8 6 3 39 39 H 0.96998 * 119.99825 * 35.00023 * 9 6 3 40 40 H 1.07992 * 119.99701 * 359.97438 * 14 13 10 41 41 H 1.08000 * 120.00356 * 179.97438 * 15 14 13 42 42 H 1.09003 * 109.46871 * 209.99878 * 17 16 15 43 43 H 1.09001 * 109.47017 * 329.99216 * 17 16 15 44 44 H 0.97005 * 120.00116 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.00299 * 179.97438 * 26 16 15 46 46 H 1.07997 * 120.00423 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4442 -0.1258 7 1 3.8532 0.9569 -1.0572 8 6 4.1749 0.6876 1.0558 9 7 4.0533 2.8254 -0.1252 10 16 5.3651 3.2402 -1.0469 11 8 6.3673 2.2694 -0.7782 12 8 5.5632 4.6347 -0.8582 13 6 4.9052 3.0268 -2.7344 14 6 4.3398 4.0760 -3.4347 15 6 3.9785 3.9084 -4.7584 16 6 4.1832 2.6918 -5.3820 17 6 3.7833 2.5071 -6.8232 18 6 4.9400 2.8742 -7.7165 19 1 5.8718 3.2076 -7.2840 20 6 4.8092 2.7836 -9.0861 21 7 3.6747 2.3772 -9.6128 22 14 6.2428 3.2394 -10.1935 23 1 7.3966 3.6631 -9.3604 24 1 6.6297 2.0623 -11.0121 25 1 5.8419 4.3545 -11.0885 26 6 4.7496 1.6430 -4.6821 27 6 5.1096 1.8101 -3.3579 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0700 1.5874 2.1492 34 1 1.9991 3.1540 1.3075 35 1 0.5491 2.1252 1.3970 36 1 3.8866 1.1749 1.9872 37 1 3.8116 -0.3401 1.0557 38 1 5.2613 0.6892 0.9664 39 1 3.6083 3.4970 0.4151 40 1 4.1795 5.0263 -2.9473 41 1 3.5364 4.7279 -5.3055 42 1 3.5089 1.4660 -6.9935 43 1 2.9317 3.1489 -7.0491 44 1 3.5825 2.3138 -10.5764 45 1 4.9092 0.6923 -5.1691 46 1 5.5515 0.9905 -2.8108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884976365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:41 Heat of formation + Delta-G solvation = -101.455812 kcal Electronic energy + Delta-G solvation = -25841.950969 eV Core-core repulsion = 22242.472562 eV Total energy + Delta-G solvation = -3599.478406 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.24752 -39.35996 -38.27263 -36.95148 -35.60649 -34.85953 -33.32592 -31.97126 -30.80942 -29.52194 -29.25453 -26.06408 -25.58941 -23.79053 -23.42021 -22.47858 -20.56959 -20.22487 -19.02066 -18.61411 -18.41838 -17.26266 -16.85667 -16.45743 -16.14918 -15.98876 -15.64650 -15.40544 -15.28335 -14.66631 -14.62132 -14.45698 -14.24015 -13.94011 -13.46598 -13.41567 -13.39027 -13.25754 -13.15858 -12.98874 -12.92073 -12.75615 -12.69351 -12.65709 -12.51902 -12.18453 -12.05013 -11.86374 -11.67372 -11.64513 -11.43296 -11.38101 -11.19627 -10.66495 -10.44949 -9.96697 -9.95085 -8.27945 -6.40607 -0.60577 -0.06690 0.39011 1.36748 1.38307 1.50979 2.02473 2.34334 2.56542 2.83063 3.04750 3.33696 3.75611 3.86284 3.93615 3.96158 4.04460 4.15304 4.29099 4.39790 4.44612 4.47138 4.50353 4.66525 4.75300 4.80632 4.80985 4.85116 4.90329 5.05801 5.10135 5.12417 5.20256 5.24041 5.24374 5.25498 5.29514 5.32676 5.34481 5.43284 5.59845 5.66535 5.66995 5.85633 5.91771 6.09276 6.13681 6.71372 7.28606 8.82297 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.003214 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.841996 B = 8710.892604 C = 9776.601335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.095 4.095 4 H 0.069 0.931 5 C -0.153 4.153 6 C 0.147 3.853 7 H 0.081 0.919 8 C -0.176 4.176 9 N -1.098 6.098 10 S 2.722 3.278 11 O -0.979 6.979 12 O -0.989 6.989 13 C -0.700 4.700 14 C -0.019 4.019 15 C -0.155 4.155 16 C -0.003 4.003 17 C 0.048 3.952 18 C -0.533 4.533 19 H 0.053 0.947 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.964 3.036 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.154 4.154 27 C -0.020 4.020 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.426 0.574 40 H 0.154 0.846 41 H 0.129 0.871 42 H 0.014 0.986 43 H 0.013 0.987 44 H 0.267 0.733 45 H 0.130 0.870 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 -3.283 23.970 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.115 4.115 4 H 0.088 0.912 5 C -0.210 4.210 6 C 0.040 3.960 7 H 0.099 0.901 8 C -0.234 4.234 9 N -0.861 5.861 10 S 2.812 3.188 11 O -0.969 6.969 12 O -0.979 6.979 13 C -0.787 4.787 14 C -0.038 4.038 15 C -0.174 4.174 16 C -0.003 4.003 17 C 0.011 3.989 18 C -0.571 4.571 19 H 0.071 0.929 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.789 3.211 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.172 4.172 27 C -0.039 4.039 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.265 0.735 40 H 0.172 0.828 41 H 0.147 0.853 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.148 0.852 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.250 -3.159 24.010 24.587 hybrid contribution -0.157 0.350 -1.768 1.809 sum -4.407 -2.809 22.241 22.847 Atomic orbital electron populations 1.21815 0.95536 1.01854 1.01890 1.21631 0.96239 0.95268 1.02793 1.21412 0.92768 0.97628 0.99733 0.91225 1.21966 1.02007 1.00443 0.96583 1.20999 0.95128 0.79826 1.00024 0.90090 1.22438 1.01191 1.01298 0.98496 1.55414 1.51838 1.18176 1.60722 1.00874 0.73091 0.72106 0.72695 1.93540 1.56398 1.62777 1.84193 1.93534 1.85218 1.33111 1.86033 1.30809 1.19937 1.01885 1.26048 1.21004 0.91448 0.97587 0.93772 1.21298 1.03210 0.97527 0.95375 1.20815 0.90100 0.93561 0.95867 1.18266 0.96220 0.96772 0.87628 1.21316 0.98847 1.45462 0.91495 0.92867 1.25858 0.98671 0.94761 0.99629 1.70060 1.26480 1.47483 1.12400 0.85406 0.79055 0.78204 0.78463 1.19254 1.20000 1.20046 1.21303 1.01343 0.99725 0.94866 1.21037 0.92878 0.95610 0.94401 0.92446 0.91739 0.93611 0.92229 0.90179 0.91174 0.92343 0.91693 0.90523 0.89738 0.92710 0.73526 0.82845 0.85340 0.96762 0.96876 0.92371 0.85181 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.67 71.98 0.70 -1.14 16 2 C -0.12 -1.47 4.90 30.59 0.15 -1.32 16 3 C -0.10 -1.26 2.40 -10.79 -0.03 -1.28 16 4 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 5 C -0.15 -1.55 8.41 71.98 0.61 -0.94 16 6 C 0.15 2.31 2.60 44.99 0.12 2.42 16 7 H 0.08 1.37 7.23 -2.39 -0.02 1.36 16 8 C -0.18 -2.43 8.81 71.98 0.63 -1.79 16 9 N -1.10 -19.00 5.43 -169.39 -0.92 -19.92 16 10 S 2.72 69.00 5.65 -56.49 -0.32 68.68 16 11 O -0.98 -28.92 16.54 -128.00 -2.12 -31.04 16 12 O -0.99 -29.80 17.28 -128.00 -2.21 -32.01 16 13 C -0.70 -20.72 5.82 22.27 0.13 -20.59 16 14 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 15 C -0.16 -5.82 9.70 22.27 0.22 -5.60 16 16 C 0.00 -0.13 5.07 -19.87 -0.10 -0.23 16 17 C 0.05 2.46 5.10 29.10 0.15 2.61 16 18 C -0.53 -29.77 9.09 25.60 0.23 -29.53 16 19 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 20 C 0.01 0.55 5.46 84.65 0.46 1.01 16 21 N -0.92 -54.12 13.29 21.45 0.28 -53.83 16 22 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 26 C -0.15 -5.67 9.70 22.27 0.22 -5.46 16 27 C -0.02 -0.62 8.90 22.27 0.20 -0.42 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.65 6.57 -2.39 -0.02 0.64 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.77 6.71 -2.39 -0.02 0.76 16 33 H 0.07 0.60 6.43 -2.38 -0.02 0.58 16 34 H 0.06 0.55 6.50 -2.39 -0.02 0.53 16 35 H 0.06 0.61 6.56 -2.39 -0.02 0.60 16 36 H 0.08 0.85 6.43 -2.39 -0.02 0.84 16 37 H 0.08 0.91 6.54 -2.39 -0.02 0.89 16 38 H 0.05 0.96 7.64 -2.38 -0.02 0.94 16 39 H 0.43 5.54 7.03 -96.75 -0.68 4.86 16 40 H 0.15 4.03 7.62 -2.91 -0.02 4.00 16 41 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 42 H 0.01 0.76 8.08 -2.39 -0.02 0.74 16 43 H 0.01 0.70 8.09 -2.39 -0.02 0.68 16 44 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 45 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 46 H 0.16 3.92 7.62 -2.91 -0.02 3.89 16 Total: -1.00 -69.47 378.00 0.93 -68.54 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.30 Total: 16.52 kcal Atomic # 6 Polarization: -66.55 SS G_CDS: 3.89 Total: -62.65 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -0.64 Total: -73.75 kcal Atomic # 8 Polarization: -58.72 SS G_CDS: -4.33 Total: -63.05 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 69.00 SS G_CDS: -0.32 Total: 68.68 kcal Total: -69.47 0.93 -68.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884976365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.911 kcal (2) G-P(sol) polarization free energy of solvation -69.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds