Wall clock time and date at job start Tue Mar 31 2020 14:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47175 * 2 1 4 4 N 1.46490 * 109.47195 * 185.18039 * 3 2 1 5 5 C 1.46501 * 120.00335 * 274.10011 * 4 3 2 6 6 C 1.53005 * 109.46866 * 295.10262 * 5 4 3 7 7 C 1.52993 * 109.47251 * 55.10042 * 5 4 3 8 8 S 1.65607 * 119.99960 * 94.09719 * 4 3 2 9 9 O 1.42100 * 106.40271 * 156.46164 * 8 4 3 10 10 O 1.42094 * 106.39968 * 23.53675 * 8 4 3 11 11 C 1.76198 * 107.21830 * 270.00058 * 8 4 3 12 12 C 1.38242 * 119.99847 * 269.72177 * 11 8 4 13 13 C 1.38243 * 119.99839 * 179.76307 * 12 11 8 14 14 C 1.38232 * 119.99765 * 0.51392 * 13 12 11 15 15 C 1.50697 * 119.99968 * 179.72456 * 14 13 12 16 16 C 1.50705 * 109.47079 * 270.02080 * 15 14 13 17 17 H 1.08005 * 119.99751 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00279 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99640 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99945 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47242 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47211 * 120.00021 * 20 18 16 23 23 H 1.48504 * 109.46905 * 239.99917 * 20 18 16 24 24 C 1.38242 * 120.00458 * 359.74113 * 14 13 12 25 25 C 1.38237 * 119.99642 * 0.02562 * 24 14 13 26 26 H 1.08996 * 109.47656 * 300.00529 * 1 2 3 27 27 H 1.09003 * 109.46849 * 60.00746 * 1 2 3 28 28 H 1.09005 * 109.47134 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47656 * 239.99471 * 2 1 3 30 30 H 1.09003 * 109.46849 * 119.99254 * 2 1 3 31 31 H 1.08999 * 109.46955 * 65.18234 * 3 2 1 32 32 H 1.08996 * 109.46501 * 305.18312 * 3 2 1 33 33 H 1.09001 * 109.47015 * 175.10705 * 5 4 3 34 34 H 1.09002 * 109.46842 * 59.99619 * 6 5 4 35 35 H 1.08991 * 109.47080 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.46970 * 300.00154 * 6 5 4 37 37 H 1.09003 * 109.47302 * 53.48358 * 7 5 4 38 38 H 1.09003 * 109.47365 * 173.47667 * 7 5 4 39 39 H 1.08997 * 109.47193 * 293.47917 * 7 5 4 40 40 H 1.07994 * 119.99923 * 0.02562 * 12 11 8 41 41 H 1.07991 * 120.00006 * 180.23662 * 13 12 11 42 42 H 1.08999 * 109.47186 * 30.01862 * 15 14 13 43 43 H 1.08999 * 109.47608 * 150.02510 * 15 14 13 44 44 H 0.96999 * 119.99472 * 180.02562 * 19 18 16 45 45 H 1.07997 * 120.00409 * 179.97438 * 24 14 13 46 46 H 1.07997 * 120.00055 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4996 1.4445 -0.1247 5 6 4.3371 1.3166 1.0705 6 6 4.1362 2.5400 1.9672 7 6 3.9429 0.0524 1.8367 8 16 4.2030 1.5910 -1.6168 9 8 5.5088 2.1061 -1.3960 10 8 3.2460 2.2300 -2.4504 11 6 4.4121 -0.0372 -2.2570 12 6 5.5803 -0.7331 -2.0079 13 6 5.7424 -2.0124 -2.5061 14 6 4.7406 -2.5916 -3.2622 15 6 4.9198 -3.9838 -3.8105 16 6 5.5590 -3.9086 -5.1733 17 1 5.8099 -2.9486 -5.5998 18 6 5.8235 -5.0653 -5.8755 19 7 5.5184 -6.2343 -5.3559 20 14 6.6164 -4.9720 -7.5643 21 1 6.8589 -3.5507 -7.9194 22 1 7.9074 -5.7055 -7.5462 23 1 5.7124 -5.5857 -8.5701 24 6 3.5746 -1.8938 -3.5158 25 6 3.4105 -0.6164 -3.0136 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.7544 1.9289 0.9328 32 1 1.6028 1.9824 -0.8399 33 1 5.3842 1.2508 0.7750 34 1 3.0890 2.6058 2.2626 35 1 4.7596 2.4451 2.8562 36 1 4.4170 3.4407 1.4213 37 1 3.9750 -0.8049 1.1643 38 1 4.6395 -0.1055 2.6601 39 1 2.9334 0.1669 2.2316 40 1 6.3645 -0.2789 -1.4206 41 1 6.6534 -2.5575 -2.3083 42 1 5.5592 -4.5587 -3.1406 43 1 3.9478 -4.4704 -3.8916 44 1 5.7048 -7.0480 -5.8498 45 1 2.7921 -2.3462 -4.1069 46 1 2.4997 -0.0710 -3.2120 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885279291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:09 Heat of formation + Delta-G solvation = -89.351620 kcal Electronic energy + Delta-G solvation = -26401.625206 eV Core-core repulsion = 22802.671677 eV Total energy + Delta-G solvation = -3598.953529 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.25235 -38.99673 -38.46671 -36.99598 -35.61191 -34.58078 -33.32688 -31.97744 -31.82357 -29.26027 -28.03025 -26.89170 -25.59610 -23.75068 -22.54269 -22.51087 -21.86812 -19.92908 -19.16331 -18.66859 -18.51401 -17.28524 -16.86846 -16.38885 -16.01893 -15.74684 -15.40279 -15.28048 -15.05523 -14.85152 -14.65439 -14.46331 -14.25770 -13.91425 -13.72907 -13.47286 -13.41271 -13.38786 -13.21204 -13.03177 -12.86627 -12.70934 -12.69768 -12.62720 -12.49424 -12.32790 -12.13394 -12.05993 -11.89706 -11.69404 -11.56153 -11.42122 -11.27252 -10.66866 -10.10080 -9.96733 -9.88314 -8.28304 -6.40969 -0.67019 -0.06958 0.38399 1.36359 1.37854 1.50598 1.91053 2.33974 2.56349 2.77344 3.04365 3.21614 3.70227 3.84083 3.94674 4.09619 4.12317 4.14641 4.29031 4.30969 4.39803 4.45023 4.46132 4.52116 4.76217 4.80200 4.82535 4.88129 4.89181 4.89605 5.00648 5.05297 5.09676 5.21029 5.23183 5.24942 5.28295 5.31577 5.32409 5.46401 5.48749 5.55525 5.66137 5.76012 5.84987 5.91150 6.08852 6.70895 7.28219 8.81972 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018556 B = 0.003303 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.571735 B = 8475.179478 C = 8804.060517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.159 4.159 3 C 0.111 3.889 4 N -0.983 5.983 5 C 0.132 3.868 6 C -0.158 4.158 7 C -0.162 4.162 8 S 2.708 3.292 9 O -0.982 6.982 10 O -0.982 6.982 11 C -0.699 4.699 12 C -0.019 4.019 13 C -0.153 4.153 14 C -0.003 4.003 15 C 0.049 3.951 16 C -0.534 4.534 17 H 0.053 0.947 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.275 1.275 24 C -0.153 4.153 25 C -0.017 4.017 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.153 0.847 41 H 0.130 0.870 42 H 0.014 0.986 43 H 0.013 0.987 44 H 0.267 0.733 45 H 0.129 0.871 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.562 15.747 17.408 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.198 4.198 3 C -0.013 4.013 4 N -0.822 5.822 5 C 0.027 3.973 6 C -0.217 4.217 7 C -0.220 4.220 8 S 2.801 3.199 9 O -0.972 6.972 10 O -0.972 6.972 11 C -0.786 4.786 12 C -0.038 4.038 13 C -0.172 4.172 14 C -0.003 4.003 15 C 0.012 3.988 16 C -0.571 4.571 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.789 3.211 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.172 4.172 25 C -0.036 4.036 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.170 0.830 41 H 0.148 0.852 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.146 0.854 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.320 16.356 16.966 24.677 hybrid contribution 0.485 -1.500 -1.289 2.036 sum -6.835 14.856 15.678 22.654 Atomic orbital electron populations 1.21704 0.94262 1.02151 1.02640 1.22295 0.97196 0.97151 1.03201 1.21638 0.76884 0.97487 1.05308 1.57494 1.14970 1.88763 1.20949 1.21136 0.94099 0.97261 0.84772 1.22145 1.03628 0.96288 0.99616 1.22306 1.03314 0.96031 1.00391 1.01269 0.72461 0.73431 0.72765 1.93517 1.40068 1.78021 1.85625 1.93507 1.62782 1.73709 1.67242 1.30855 1.03431 1.26231 1.18049 1.20976 0.94948 0.92921 0.94943 1.21282 0.99553 0.96236 1.00111 1.20800 0.92891 0.96812 0.89806 1.18257 0.96661 0.88634 0.95245 1.21317 1.40878 0.92838 1.02101 0.92903 1.25856 0.95989 0.94866 1.02185 1.70059 1.48359 0.98182 1.39806 0.85408 0.78328 0.78409 0.78991 1.19291 1.19974 1.20004 1.21271 0.98361 0.95501 1.02044 1.20926 0.97262 0.93742 0.91685 0.90967 0.92658 0.92698 0.93298 0.89807 0.87068 0.89583 0.89192 0.90683 0.89725 0.93133 0.93077 0.90183 0.90421 0.82990 0.85247 0.96813 0.96860 0.92363 0.85355 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.16 -2.56 5.82 30.60 0.18 -2.39 16 3 C 0.11 1.73 5.13 86.38 0.44 2.18 16 4 N -0.98 -19.02 2.73 -493.41 -1.35 -20.37 16 5 C 0.13 2.10 3.20 44.99 0.14 2.24 16 6 C -0.16 -1.88 9.25 71.98 0.67 -1.22 16 7 C -0.16 -2.10 7.73 71.98 0.56 -1.54 16 8 S 2.71 74.23 5.68 -56.49 -0.32 73.91 16 9 O -0.98 -30.77 15.90 -128.00 -2.03 -32.80 16 10 O -0.98 -30.84 15.84 -128.00 -2.03 -32.87 16 11 C -0.70 -21.61 5.97 22.27 0.13 -21.47 16 12 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 13 C -0.15 -5.77 9.70 22.27 0.22 -5.56 16 14 C 0.00 -0.12 5.07 -19.87 -0.10 -0.22 16 15 C 0.05 2.52 5.10 29.10 0.15 2.67 16 16 C -0.53 -29.92 9.09 25.60 0.23 -29.69 16 17 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 18 C 0.01 0.56 5.46 84.66 0.46 1.03 16 19 N -0.92 -54.25 13.29 21.45 0.28 -53.96 16 20 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 C -0.15 -5.79 9.70 22.27 0.22 -5.58 16 25 C -0.02 -0.55 8.28 22.27 0.18 -0.36 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.05 0.99 6.85 -2.39 -0.02 0.98 16 30 H 0.08 1.21 5.17 -2.39 -0.01 1.19 16 31 H 0.11 1.12 6.70 -2.39 -0.02 1.11 16 32 H 0.09 1.48 6.93 -2.39 -0.02 1.47 16 33 H 0.09 1.59 7.00 -2.39 -0.02 1.58 16 34 H 0.07 0.68 6.86 -2.39 -0.02 0.66 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.05 0.83 7.80 -2.39 -0.02 0.81 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.79 6.58 -2.39 -0.02 0.78 16 40 H 0.15 4.07 7.61 -2.91 -0.02 4.04 16 41 H 0.13 4.70 8.06 -2.92 -0.02 4.68 16 42 H 0.01 0.74 8.09 -2.39 -0.02 0.72 16 43 H 0.01 0.71 8.09 -2.39 -0.02 0.69 16 44 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 45 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 46 H 0.15 4.11 7.62 -2.91 -0.02 4.09 16 Total: -1.00 -69.06 379.54 1.94 -67.12 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.95 Total: 14.72 kcal Atomic # 6 Polarization: -66.01 SS G_CDS: 4.40 Total: -61.60 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -1.06 Total: -74.33 kcal Atomic # 8 Polarization: -61.61 SS G_CDS: -4.06 Total: -65.67 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 74.23 SS G_CDS: -0.32 Total: 73.91 kcal Total: -69.06 1.94 -67.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885279291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.234 kcal (2) G-P(sol) polarization free energy of solvation -69.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds