Wall clock time and date at job start Tue Mar 31 2020 14:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09001 * 109.47502 * 305.00219 * 3 2 1 5 5 C 1.53006 * 109.47127 * 65.00062 * 3 2 1 6 6 C 1.52999 * 109.47317 * 184.99572 * 3 2 1 7 7 C 1.53002 * 109.47645 * 174.99822 * 6 3 2 8 8 N 1.46497 * 109.47511 * 179.97438 * 7 6 3 9 9 S 1.65599 * 120.00172 * 165.00010 * 8 7 6 10 10 O 1.42093 * 106.40266 * 178.54335 * 9 8 7 11 11 O 1.42102 * 106.40054 * 311.46570 * 9 8 7 12 12 C 1.76196 * 107.21395 * 65.00262 * 9 8 7 13 13 C 1.38240 * 120.00247 * 269.72547 * 12 9 8 14 14 C 1.38240 * 119.99936 * 179.76938 * 13 12 9 15 15 C 1.38241 * 119.99902 * 0.50781 * 14 13 12 16 16 C 1.50694 * 119.99819 * 179.72796 * 15 14 13 17 17 C 1.50707 * 109.46744 * 270.01982 * 16 15 14 18 18 H 1.07997 * 119.99961 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99783 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00193 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00225 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47213 * 89.99702 * 21 19 17 23 23 H 1.48499 * 109.47308 * 210.00018 * 21 19 17 24 24 H 1.48504 * 109.46878 * 329.99657 * 21 19 17 25 25 C 1.38236 * 119.99755 * 359.74762 * 15 14 13 26 26 C 1.38236 * 120.00543 * 359.97438 * 25 15 14 27 27 H 1.08995 * 109.47185 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47227 * 300.00275 * 1 2 3 29 29 H 1.09006 * 109.46717 * 59.99823 * 1 2 3 30 30 H 1.09000 * 109.47218 * 240.00282 * 2 1 3 31 31 H 1.08998 * 109.46849 * 119.99880 * 2 1 3 32 32 H 1.09001 * 109.47002 * 299.99574 * 5 3 2 33 33 H 1.08993 * 109.46955 * 60.00011 * 5 3 2 34 34 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47317 * 295.00638 * 6 3 2 36 36 H 1.09007 * 109.46669 * 55.00297 * 6 3 2 37 37 H 1.08993 * 109.47092 * 300.00720 * 7 6 3 38 38 H 1.09006 * 109.46455 * 60.00000 * 7 6 3 39 39 H 0.97007 * 119.99579 * 345.00588 * 8 7 6 40 40 H 1.07994 * 119.99512 * 0.02562 * 13 12 9 41 41 H 1.07995 * 119.99928 * 180.23122 * 14 13 12 42 42 H 1.08995 * 109.47551 * 30.01739 * 16 15 14 43 43 H 1.09003 * 109.47238 * 150.02254 * 16 15 14 44 44 H 0.96999 * 120.00117 * 179.97438 * 20 19 17 45 45 H 1.08003 * 119.99615 * 179.97438 * 25 15 14 46 46 H 1.07994 * 119.99892 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1256 7 6 4.0645 2.8850 -0.2511 8 7 5.5246 2.8868 -0.3707 9 16 6.3113 4.2491 -0.8881 10 8 7.6991 3.9448 -0.8634 11 8 5.6319 4.6850 -2.0576 12 6 6.0533 5.4949 0.3308 13 6 4.9651 6.3419 0.2339 14 6 4.7601 7.3163 1.1929 15 6 5.6490 7.4505 2.2430 16 6 5.4289 8.5166 3.2850 17 6 6.1268 9.7837 2.8623 18 1 6.6752 9.8138 1.9324 19 6 6.0659 10.9043 3.6633 20 7 6.6753 12.0099 3.2948 21 14 5.1191 10.8517 5.2728 22 1 6.0267 10.4231 6.3672 23 1 4.5821 12.2026 5.5756 24 1 3.9959 9.8875 5.1550 25 6 6.7401 6.6069 2.3369 26 6 6.9420 5.6288 1.3812 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5489 2.1253 1.3969 33 1 2.0698 1.5875 2.1491 34 1 1.9989 3.1541 1.3076 35 1 4.0029 0.9836 0.7597 36 1 3.8570 0.8801 -1.0113 37 1 3.6264 3.3457 -1.1364 38 1 3.7722 3.4493 0.6346 39 1 6.0305 2.0900 -0.1469 40 1 4.2729 6.2397 -0.5887 41 1 3.9079 7.9756 1.1192 42 1 4.3609 8.7076 3.3895 43 1 5.8330 8.1804 4.2399 44 1 6.6322 12.7984 3.8582 45 1 7.4349 6.7120 3.1572 46 1 7.7947 4.9701 1.4544 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885290750.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:27 Heat of formation + Delta-G solvation = -84.151334 kcal Electronic energy + Delta-G solvation = -25100.438096 eV Core-core repulsion = 21501.710068 eV Total energy + Delta-G solvation = -3598.728028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.89870 -38.07255 -37.13289 -35.78089 -35.13566 -33.69033 -31.74837 -31.04822 -30.65029 -28.03737 -27.97320 -25.32009 -23.52017 -22.52232 -22.22700 -20.77323 -20.39593 -19.33255 -17.85451 -17.26414 -16.91987 -16.45963 -15.84416 -15.35335 -15.14850 -14.83059 -14.54135 -14.30655 -14.20047 -13.89502 -13.75427 -13.24502 -13.17769 -12.78875 -12.64024 -12.43819 -12.24409 -12.15494 -12.04064 -11.95804 -11.92407 -11.89825 -11.78443 -11.50195 -10.99254 -10.95484 -10.93083 -10.84992 -10.78121 -10.53575 -10.25741 -10.11384 -9.62365 -9.53152 -8.71367 -8.64487 -8.45830 -6.19324 -4.20938 0.48371 1.25430 1.72429 3.04888 3.19351 3.27869 3.28487 3.73564 4.06252 4.26858 4.29658 4.46470 4.50505 4.53990 4.80129 4.90230 5.07467 5.10778 5.16204 5.17389 5.19468 5.22803 5.29621 5.31661 5.44065 5.56655 5.64163 5.66165 5.71091 5.72795 5.75068 5.79502 5.81585 5.89778 6.06132 6.10160 6.15133 6.23694 6.43296 6.68414 6.69831 6.79910 6.80818 7.28379 7.29131 7.52658 8.33685 8.84350 9.38818 10.93163 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.002971 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.410021 B = 9420.733455 C =11014.870861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.093 4.093 4 H 0.075 0.925 5 C -0.155 4.155 6 C -0.121 4.121 7 C 0.113 3.887 8 N -1.120 6.120 9 S 2.699 3.301 10 O -0.966 6.966 11 O -0.964 6.964 12 C -0.701 4.701 13 C -0.024 4.024 14 C -0.143 4.143 15 C 0.031 3.969 16 C 0.006 3.994 17 C -0.520 4.520 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.894 5.894 21 Si 0.879 3.121 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.144 4.144 26 C -0.021 4.021 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.416 0.584 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.266 0.734 45 H 0.130 0.870 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.823 -24.320 -4.708 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.112 4.112 4 H 0.093 0.907 5 C -0.213 4.213 6 C -0.160 4.160 7 C -0.013 4.013 8 N -0.880 5.880 9 S 2.791 3.209 10 O -0.956 6.956 11 O -0.954 6.954 12 C -0.790 4.790 13 C -0.043 4.043 14 C -0.162 4.162 15 C 0.031 3.969 16 C -0.031 4.031 17 C -0.558 4.558 18 H 0.093 0.907 19 C -0.131 4.131 20 N -0.532 5.532 21 Si 0.706 3.294 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.189 1.189 25 C -0.163 4.163 26 C -0.040 4.040 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.250 0.750 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.076 0.924 45 H 0.147 0.853 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.418 -23.875 -5.492 26.246 hybrid contribution -0.395 0.258 1.663 1.729 sum -9.813 -23.617 -3.829 25.859 Atomic orbital electron populations 1.21831 0.95854 1.01494 1.02062 1.21565 0.95978 0.96134 1.01977 1.21155 0.94475 0.96540 0.99012 0.90672 1.21989 1.01550 1.00871 0.96843 1.21832 0.95640 0.95691 1.02854 1.21418 0.78672 0.98810 1.02409 1.55575 1.15691 1.29903 1.86799 1.01549 0.72712 0.72737 0.73911 1.93569 1.30819 1.84041 1.87182 1.93559 1.75495 1.81534 1.44774 1.30376 1.07570 1.21648 1.19411 1.20787 0.94040 0.92708 0.96795 1.21216 1.01111 0.98837 0.95010 1.20700 0.90727 0.91269 0.94253 1.18983 0.98270 0.93037 0.92801 1.20819 1.33275 0.93096 1.08572 0.90665 1.24989 0.94988 0.95157 0.97920 1.69888 1.42896 1.02105 1.38279 0.86788 0.80867 0.77689 0.84058 1.20047 1.21068 1.18939 1.21226 0.98612 0.96187 1.00237 1.20771 0.95596 0.96409 0.91230 0.92955 0.92388 0.92710 0.92010 0.91992 0.92349 0.92594 0.92092 0.91107 0.91048 0.90212 0.91239 0.75035 0.85118 0.85244 0.94809 0.95267 0.92366 0.85255 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 9.67 37.16 0.36 -0.49 16 2 C -0.12 -0.67 5.40 -26.73 -0.14 -0.81 16 3 C -0.09 -0.57 2.39 -90.62 -0.22 -0.79 16 4 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 5 C -0.16 -1.02 8.70 37.16 0.32 -0.69 16 6 C -0.12 -0.78 4.82 -26.73 -0.13 -0.91 16 7 C 0.11 0.94 5.98 -4.04 -0.02 0.91 16 8 N -1.12 -10.45 6.00 -10.61 -0.06 -10.52 16 9 S 2.70 36.36 5.74 -107.50 -0.62 35.75 16 10 O -0.97 -15.37 17.28 -57.17 -0.99 -16.35 16 11 O -0.96 -15.33 16.75 -57.17 -0.96 -16.28 16 12 C -0.70 -10.72 5.95 -39.58 -0.24 -10.95 16 13 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 14 C -0.14 -2.54 9.70 -39.58 -0.38 -2.93 16 15 C 0.03 0.61 5.07 -104.62 -0.53 0.08 16 16 C 0.01 0.14 4.17 -29.03 -0.12 0.02 16 17 C -0.52 -14.26 9.65 -34.44 -0.33 -14.59 16 18 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 19 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 20 N -0.89 -26.77 13.96 55.43 0.77 -25.99 16 21 Si 0.88 20.55 27.47 -169.99 -4.67 15.89 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 25 C -0.14 -2.58 9.70 -39.58 -0.38 -2.97 16 26 C -0.02 -0.33 9.52 -39.58 -0.38 -0.71 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.69 7.75 -51.93 -0.40 0.28 16 38 H 0.07 0.57 6.56 -51.93 -0.34 0.22 16 39 H 0.42 2.96 8.65 -34.47 -0.30 2.66 16 40 H 0.13 1.74 7.61 -52.49 -0.40 1.34 16 41 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.03 0.74 7.15 -51.93 -0.37 0.37 16 43 H 0.03 0.64 7.51 -51.93 -0.39 0.25 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 46 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16 LS Contribution 383.76 15.07 5.78 5.78 Total: -1.00 -33.59 383.76 -10.85 -44.43 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.44 Total: 0.95 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: -2.67 Total: -33.65 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.71 Total: -36.51 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -1.95 Total: -32.64 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.89 kcal Atomic # 16 Polarization: 36.36 SS G_CDS: -0.62 Total: 35.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.59 -10.85 -44.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885290750.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.718 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds