Wall clock time and date at job start Tue Mar 31 2020 14:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47053 * 2 1 4 4 H 1.08994 * 109.47637 * 54.99690 * 3 2 1 5 5 C 1.53006 * 109.47022 * 294.99407 * 3 2 1 6 6 C 1.53004 * 109.47051 * 175.00115 * 3 2 1 7 7 N 1.46495 * 109.47283 * 183.94730 * 6 3 2 8 8 C 1.46496 * 119.99940 * 274.03568 * 7 6 3 9 9 C 1.53005 * 109.47209 * 275.59512 * 8 7 6 10 10 S 1.65603 * 119.99978 * 94.03222 * 7 6 3 11 11 O 1.42100 * 106.40493 * 344.59244 * 10 7 6 12 12 O 1.42102 * 106.40232 * 211.66906 * 10 7 6 13 13 C 1.76207 * 107.21585 * 98.13362 * 10 7 6 14 14 C 1.37633 * 120.12755 * 112.84903 * 13 10 7 15 15 C 1.38613 * 120.25188 * 180.29870 * 14 13 10 16 16 C 1.38656 * 120.49608 * 359.44030 * 15 14 13 17 17 C 1.37604 * 120.25113 * 0.55715 * 16 15 14 18 18 C 1.40691 * 120.12598 * 292.86592 * 13 10 7 19 19 C 1.41396 * 120.24452 * 359.96324 * 18 13 10 20 20 H 1.07998 * 119.99710 * 322.83905 * 19 18 13 21 21 C 1.39951 * 119.99922 * 142.84785 * 19 18 13 22 22 N 1.30819 * 120.00316 * 357.04489 * 21 19 18 23 23 Si 1.86803 * 119.99820 * 177.05675 * 21 19 18 24 24 H 1.48504 * 109.46846 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47223 * 119.99531 * 23 21 19 26 26 H 1.48497 * 109.46989 * 239.99786 * 23 21 19 27 27 H 1.09004 * 109.47522 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47553 * 300.00275 * 1 2 3 29 29 H 1.09001 * 109.47166 * 59.99890 * 1 2 3 30 30 H 1.09000 * 109.47553 * 239.99725 * 2 1 3 31 31 H 1.09000 * 109.46956 * 119.99610 * 2 1 3 32 32 H 1.09005 * 109.46699 * 55.05766 * 5 3 2 33 33 H 1.08998 * 109.46751 * 175.05629 * 5 3 2 34 34 H 1.08994 * 109.47179 * 295.05475 * 5 3 2 35 35 H 1.08993 * 109.47338 * 63.94340 * 6 3 2 36 36 H 1.08999 * 109.46838 * 303.94879 * 6 3 2 37 37 H 1.09001 * 109.47579 * 35.60089 * 8 7 6 38 38 H 1.09008 * 109.47337 * 155.59511 * 8 7 6 39 39 H 1.08997 * 109.46816 * 60.00253 * 9 8 7 40 40 H 1.09000 * 109.46810 * 179.97438 * 9 8 7 41 41 H 1.08996 * 109.47052 * 300.00050 * 9 8 7 42 42 H 1.08003 * 119.87812 * 0.02562 * 14 13 10 43 43 H 1.07994 * 119.75529 * 179.70354 * 15 14 13 44 44 H 1.08000 * 119.87678 * 180.30294 * 16 15 14 45 45 H 1.07998 * 120.13425 * 179.74294 * 17 16 15 46 46 H 0.96993 * 120.00628 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3075 6 6 3.5648 1.4443 0.1257 7 7 4.0453 2.8250 0.2205 8 6 4.3054 3.5953 -0.9981 9 6 5.7131 3.2818 -1.5090 10 16 4.2945 3.5149 1.7052 11 8 3.6292 2.6869 2.6492 12 8 4.0175 4.9006 1.5554 13 6 6.0162 3.3869 2.0575 14 6 6.7945 4.5203 2.1208 15 6 8.1504 4.4222 2.3915 16 6 8.7360 3.1850 2.6129 17 6 7.9772 2.0385 2.5546 18 6 6.6007 2.1257 2.2747 19 6 5.8110 0.9545 2.2126 20 1 4.7988 0.9652 2.5891 21 6 6.3410 -0.2185 1.6635 22 7 7.5464 -0.2164 1.1552 23 14 5.3271 -1.7875 1.6561 24 1 4.0077 -1.5270 2.2859 25 1 5.1271 -2.2410 0.2563 26 1 6.0407 -2.8415 2.4209 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 0.5561 2.0478 -1.4398 33 1 1.9212 3.1777 -1.2712 34 1 2.1401 1.6413 -2.1427 35 1 4.0022 0.9668 -0.7510 36 1 3.8561 0.8959 1.0215 37 1 3.5740 3.3273 -1.7605 38 1 4.2274 4.6602 -0.7784 39 1 5.7911 2.2171 -1.7287 40 1 5.9064 3.8547 -2.4160 41 1 6.4444 3.5500 -0.7466 42 1 6.3480 5.4895 1.9545 43 1 8.7544 5.3163 2.4346 44 1 9.7924 3.1205 2.8279 45 1 8.4361 1.0755 2.7233 46 1 7.9137 -1.0293 0.7743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885453900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:35 Heat of formation + Delta-G solvation = -75.268330 kcal Electronic energy + Delta-G solvation = -28061.168879 eV Core-core repulsion = 24462.826047 eV Total energy + Delta-G solvation = -3598.342832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -37.79154 -37.54389 -36.35090 -34.85428 -34.67946 -33.82470 -30.46388 -30.22560 -29.57864 -28.91716 -26.24243 -25.44964 -23.11470 -22.06588 -21.44910 -21.13638 -19.81872 -17.96700 -17.60880 -16.98857 -16.10587 -15.67335 -15.42488 -14.79261 -14.56994 -14.25104 -14.06350 -13.48734 -13.32665 -13.21229 -13.05713 -12.82967 -12.73821 -12.47111 -12.06399 -11.91900 -11.73932 -11.54030 -11.45796 -11.31126 -11.22987 -11.19654 -11.14166 -11.09976 -10.88409 -10.67708 -10.59651 -10.46063 -10.45888 -10.07638 -10.00725 -9.86160 -9.49263 -9.17226 -8.31743 -8.00387 -7.51954 -6.98586 -4.78110 1.52973 2.31486 2.69758 2.96210 3.02419 3.05471 3.77370 3.87403 4.41609 4.73496 5.04598 5.13433 5.19857 5.25478 5.34305 5.47268 5.55947 5.70289 5.72302 5.74638 5.81359 5.93312 5.99043 6.01380 6.08879 6.13720 6.19285 6.21482 6.28237 6.29508 6.31415 6.36830 6.46787 6.60251 6.69778 6.76405 6.82629 6.84852 6.97579 7.05114 7.31305 7.36106 7.50079 7.71153 7.77919 7.94614 8.36529 8.55843 8.64201 9.96306 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.007514 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.067587 B = 3725.236806 C = 5124.258555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.115 4.115 4 H 0.074 0.926 5 C -0.150 4.150 6 C 0.124 3.876 7 N -0.986 5.986 8 C 0.111 3.889 9 C -0.173 4.173 10 S 2.703 3.297 11 O -0.971 6.971 12 O -0.998 6.998 13 C -0.765 4.765 14 C -0.009 4.009 15 C -0.241 4.241 16 C -0.079 4.079 17 C -0.150 4.150 18 C 0.199 3.801 19 C -0.487 4.487 20 H 0.118 0.882 21 C 0.083 3.917 22 N -0.789 5.789 23 Si 0.894 3.106 24 H -0.247 1.247 25 H -0.267 1.267 26 H -0.270 1.270 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.121 0.879 46 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.028 -0.450 -6.097 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.135 4.135 4 H 0.092 0.908 5 C -0.207 4.207 6 C -0.002 4.002 7 N -0.820 5.820 8 C -0.015 4.015 9 C -0.232 4.232 10 S 2.801 3.199 11 O -0.962 6.962 12 O -0.989 6.989 13 C -0.860 4.860 14 C -0.029 4.029 15 C -0.261 4.261 16 C -0.098 4.098 17 C -0.170 4.170 18 C 0.194 3.806 19 C -0.516 4.516 20 H 0.135 0.865 21 C -0.136 4.136 22 N -0.413 5.413 23 Si 0.717 3.283 24 H -0.170 1.170 25 H -0.191 1.191 26 H -0.195 1.195 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.139 0.861 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.549 -0.231 -5.728 8.704 hybrid contribution 0.785 -0.982 -0.291 1.291 sum -5.764 -1.214 -6.019 8.422 Atomic orbital electron populations 1.21805 0.96113 1.01097 1.01785 1.21523 0.95689 0.96469 1.02239 1.21694 0.97072 0.96155 0.98611 0.90767 1.22033 1.00578 1.00981 0.97121 1.21582 0.91591 0.82183 1.04810 1.57313 1.80627 1.22552 1.21510 1.21398 0.96891 0.95778 0.87429 1.22214 0.97752 1.02118 1.01072 1.01066 0.74880 0.71807 0.72144 1.93467 1.74597 1.68582 1.59518 1.93427 1.85686 1.33348 1.86407 1.30068 1.23883 1.00313 1.31686 1.20264 0.93631 0.95691 0.93279 1.20535 0.94815 0.96427 1.14328 1.20941 0.97758 0.93463 0.97612 1.21520 0.94997 0.97086 1.03349 1.17027 0.92132 0.89574 0.81827 1.20457 1.02319 0.93887 1.34984 0.86473 1.25899 0.94852 1.00170 0.92695 1.69762 1.14762 1.29839 1.26978 0.86445 0.81714 0.80660 0.79450 1.17018 1.19149 1.19470 0.93170 0.92718 0.92697 0.92073 0.91527 0.93021 0.92029 0.92895 0.91262 0.87585 0.90265 0.90023 0.92247 0.92719 0.91551 0.87468 0.88669 0.88803 0.86070 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.67 37.15 0.36 -1.37 16 2 C -0.12 -1.64 5.40 -26.73 -0.14 -1.78 16 3 C -0.12 -1.74 2.60 -90.61 -0.24 -1.97 16 4 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 5 C -0.15 -1.90 7.73 37.16 0.29 -1.61 16 6 C 0.12 2.18 4.49 -4.04 -0.02 2.16 16 7 N -0.99 -18.25 2.67 -114.38 -0.31 -18.56 16 8 C 0.11 1.75 5.65 -4.04 -0.02 1.72 16 9 C -0.17 -2.76 10.23 37.16 0.38 -2.38 16 10 S 2.70 59.61 5.09 -107.50 -0.55 59.06 16 11 O -0.97 -23.28 14.48 -57.17 -0.83 -24.11 16 12 O -1.00 -22.82 15.71 -57.17 -0.90 -23.72 16 13 C -0.76 -18.09 5.71 -38.88 -0.22 -18.31 16 14 C -0.01 -0.20 9.53 -39.66 -0.38 -0.58 16 15 C -0.24 -5.19 10.05 -39.29 -0.39 -5.59 16 16 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16 17 C -0.15 -3.64 8.62 -38.87 -0.33 -3.98 16 18 C 0.20 4.95 5.47 -106.82 -0.58 4.36 16 19 C -0.49 -11.82 6.17 -37.74 -0.23 -12.05 16 20 H 0.12 2.90 4.48 -52.49 -0.24 2.66 16 21 C 0.08 1.90 5.33 -17.34 -0.09 1.81 16 22 N -0.79 -18.40 11.06 55.55 0.61 -17.78 16 23 Si 0.89 17.25 28.85 -169.99 -4.90 12.35 16 24 H -0.25 -4.72 7.11 56.52 0.40 -4.32 16 25 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 26 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.57 6.46 -51.93 -0.34 0.23 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.58 6.35 -51.93 -0.33 0.25 16 33 H 0.06 0.79 5.94 -51.93 -0.31 0.48 16 34 H 0.05 0.62 8.10 -51.93 -0.42 0.19 16 35 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 36 H 0.11 2.11 3.69 -51.93 -0.19 1.92 16 37 H 0.08 1.04 5.33 -51.93 -0.28 0.76 16 38 H 0.08 1.29 7.04 -51.92 -0.37 0.93 16 39 H 0.06 0.98 8.11 -51.93 -0.42 0.55 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.24 7.88 -51.93 -0.41 0.83 16 42 H 0.11 2.25 7.32 -52.48 -0.38 1.86 16 43 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.12 2.99 6.61 -52.49 -0.35 2.64 16 46 H 0.28 6.04 8.30 -40.82 -0.34 5.70 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -27.45 364.52 -10.37 -37.82 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.96 Total: 11.16 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: -2.03 Total: -41.71 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.31 Total: -36.34 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -1.73 Total: -47.83 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -4.90 Total: 12.35 kcal Atomic # 16 Polarization: 59.61 SS G_CDS: -0.55 Total: 59.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.45 -10.37 -37.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885453900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.450 kcal (2) G-P(sol) polarization free energy of solvation -27.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds