Wall clock time and date at job start Tue Mar 31 2020 14:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47053 * 2 1 4 4 H 1.08994 * 109.47637 * 54.99690 * 3 2 1 5 5 C 1.53006 * 109.47022 * 294.99407 * 3 2 1 6 6 C 1.53004 * 109.47051 * 175.00115 * 3 2 1 7 7 N 1.46495 * 109.47283 * 183.94730 * 6 3 2 8 8 C 1.46496 * 119.99940 * 274.03568 * 7 6 3 9 9 C 1.53005 * 109.47209 * 275.59512 * 8 7 6 10 10 S 1.65603 * 119.99978 * 94.03222 * 7 6 3 11 11 O 1.42100 * 106.40493 * 344.59244 * 10 7 6 12 12 O 1.42102 * 106.40232 * 211.66906 * 10 7 6 13 13 C 1.76207 * 107.21585 * 98.13362 * 10 7 6 14 14 C 1.37633 * 120.12755 * 112.84903 * 13 10 7 15 15 C 1.38613 * 120.25188 * 180.29870 * 14 13 10 16 16 C 1.38656 * 120.49608 * 359.44030 * 15 14 13 17 17 C 1.37604 * 120.25113 * 0.55715 * 16 15 14 18 18 C 1.40691 * 120.12598 * 292.86592 * 13 10 7 19 19 C 1.41396 * 120.24452 * 359.96324 * 18 13 10 20 20 H 1.07998 * 119.99710 * 322.83905 * 19 18 13 21 21 C 1.39951 * 119.99922 * 142.84785 * 19 18 13 22 22 N 1.30819 * 120.00316 * 357.04489 * 21 19 18 23 23 Si 1.86803 * 119.99820 * 177.05675 * 21 19 18 24 24 H 1.48504 * 109.46846 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47223 * 119.99531 * 23 21 19 26 26 H 1.48497 * 109.46989 * 239.99786 * 23 21 19 27 27 H 1.09004 * 109.47522 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47553 * 300.00275 * 1 2 3 29 29 H 1.09001 * 109.47166 * 59.99890 * 1 2 3 30 30 H 1.09000 * 109.47553 * 239.99725 * 2 1 3 31 31 H 1.09000 * 109.46956 * 119.99610 * 2 1 3 32 32 H 1.09005 * 109.46699 * 55.05766 * 5 3 2 33 33 H 1.08998 * 109.46751 * 175.05629 * 5 3 2 34 34 H 1.08994 * 109.47179 * 295.05475 * 5 3 2 35 35 H 1.08993 * 109.47338 * 63.94340 * 6 3 2 36 36 H 1.08999 * 109.46838 * 303.94879 * 6 3 2 37 37 H 1.09001 * 109.47579 * 35.60089 * 8 7 6 38 38 H 1.09008 * 109.47337 * 155.59511 * 8 7 6 39 39 H 1.08997 * 109.46816 * 60.00253 * 9 8 7 40 40 H 1.09000 * 109.46810 * 179.97438 * 9 8 7 41 41 H 1.08996 * 109.47052 * 300.00050 * 9 8 7 42 42 H 1.08003 * 119.87812 * 0.02562 * 14 13 10 43 43 H 1.07994 * 119.75529 * 179.70354 * 15 14 13 44 44 H 1.08000 * 119.87678 * 180.30294 * 16 15 14 45 45 H 1.07998 * 120.13425 * 179.74294 * 17 16 15 46 46 H 0.96993 * 120.00628 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3075 6 6 3.5648 1.4443 0.1257 7 7 4.0453 2.8250 0.2205 8 6 4.3054 3.5953 -0.9981 9 6 5.7131 3.2818 -1.5090 10 16 4.2945 3.5149 1.7052 11 8 3.6292 2.6869 2.6492 12 8 4.0175 4.9006 1.5554 13 6 6.0162 3.3869 2.0575 14 6 6.7945 4.5203 2.1208 15 6 8.1504 4.4222 2.3915 16 6 8.7360 3.1850 2.6129 17 6 7.9772 2.0385 2.5546 18 6 6.6007 2.1257 2.2747 19 6 5.8110 0.9545 2.2126 20 1 4.7988 0.9652 2.5891 21 6 6.3410 -0.2185 1.6635 22 7 7.5464 -0.2164 1.1552 23 14 5.3271 -1.7875 1.6561 24 1 4.0077 -1.5270 2.2859 25 1 5.1271 -2.2410 0.2563 26 1 6.0407 -2.8415 2.4209 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 0.5561 2.0478 -1.4398 33 1 1.9212 3.1777 -1.2712 34 1 2.1401 1.6413 -2.1427 35 1 4.0022 0.9668 -0.7510 36 1 3.8561 0.8959 1.0215 37 1 3.5740 3.3273 -1.7605 38 1 4.2274 4.6602 -0.7784 39 1 5.7911 2.2171 -1.7287 40 1 5.9064 3.8547 -2.4160 41 1 6.4444 3.5500 -0.7466 42 1 6.3480 5.4895 1.9545 43 1 8.7544 5.3163 2.4346 44 1 9.7924 3.1205 2.8279 45 1 8.4361 1.0755 2.7233 46 1 7.9137 -1.0293 0.7743 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885453900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:34 Heat of formation + Delta-G solvation = -89.599560 kcal Electronic energy + Delta-G solvation = -28061.790328 eV Core-core repulsion = 24462.826047 eV Total energy + Delta-G solvation = -3598.964281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.42260 -38.96328 -38.13262 -36.66743 -35.91879 -35.57162 -31.99859 -31.72837 -31.32432 -30.05293 -27.59549 -27.08866 -24.24399 -23.63210 -23.03435 -22.89327 -20.96993 -19.67246 -19.34817 -18.59768 -17.75149 -17.21828 -17.08784 -16.18081 -16.05269 -15.62614 -15.47073 -15.07524 -14.93902 -14.77973 -14.44431 -14.21546 -14.06835 -13.78475 -13.69908 -13.25030 -13.18614 -13.00786 -12.95839 -12.89505 -12.84793 -12.74821 -12.64940 -12.42146 -12.32272 -12.16072 -12.06902 -11.83832 -11.63117 -11.60038 -11.31568 -11.26406 -11.18010 -10.92621 -9.87872 -9.64834 -9.32568 -8.71477 -6.59792 -0.16621 0.52811 0.96703 1.36880 1.43326 1.50838 2.17270 2.28276 2.66486 2.99983 3.46692 3.68444 3.90341 4.03492 4.11502 4.15404 4.30032 4.40586 4.45776 4.49342 4.56231 4.65942 4.69176 4.72959 4.78386 4.85982 4.93254 4.98926 5.02581 5.08164 5.16988 5.18975 5.21872 5.25608 5.29842 5.31607 5.41200 5.48338 5.54769 5.55955 5.62980 5.69453 5.88526 5.97871 5.98679 6.16156 6.54453 6.77323 6.84022 8.25758 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.007514 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.067587 B = 3725.236806 C = 5124.258555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.114 4.114 4 H 0.052 0.948 5 C -0.147 4.147 6 C 0.119 3.881 7 N -0.980 5.980 8 C 0.106 3.894 9 C -0.167 4.167 10 S 2.713 3.287 11 O -0.997 6.997 12 O -1.010 7.010 13 C -0.781 4.781 14 C -0.022 4.022 15 C -0.241 4.241 16 C -0.078 4.078 17 C -0.176 4.176 18 C 0.174 3.826 19 C -0.503 4.503 20 H 0.105 0.895 21 C 0.058 3.942 22 N -0.811 5.811 23 Si 0.942 3.058 24 H -0.251 1.251 25 H -0.247 1.247 26 H -0.266 1.266 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.033 0.967 42 H 0.120 0.880 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.109 0.891 46 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.745 -0.634 -8.110 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.134 4.134 4 H 0.071 0.929 5 C -0.204 4.204 6 C -0.006 4.006 7 N -0.817 5.817 8 C -0.019 4.019 9 C -0.226 4.226 10 S 2.810 3.190 11 O -0.988 6.988 12 O -1.000 7.000 13 C -0.874 4.874 14 C -0.042 4.042 15 C -0.261 4.261 16 C -0.096 4.096 17 C -0.196 4.196 18 C 0.170 3.830 19 C -0.532 4.532 20 H 0.123 0.877 21 C -0.160 4.160 22 N -0.436 5.436 23 Si 0.762 3.238 24 H -0.174 1.174 25 H -0.170 1.170 26 H -0.191 1.191 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.052 0.948 42 H 0.137 0.863 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.127 0.873 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.243 -0.400 -7.737 10.606 hybrid contribution 1.058 -0.857 0.326 1.400 sum -6.185 -1.257 -7.410 9.734 Atomic orbital electron populations 1.21785 0.94380 1.02147 1.02149 1.21550 0.97236 0.95213 1.02088 1.21663 0.94945 0.97414 0.99425 0.92903 1.22012 1.01987 1.00507 0.95887 1.21675 0.93541 0.81294 1.04091 1.57095 1.80356 1.23150 1.21071 1.21677 0.97746 0.95483 0.86988 1.22166 0.96931 1.02121 1.01390 1.00632 0.74186 0.71428 0.72752 1.93424 1.74977 1.69075 1.61316 1.93398 1.85675 1.34078 1.86874 1.30369 1.24887 1.00381 1.31800 1.20568 0.94364 0.95942 0.93280 1.20919 0.94794 0.97446 1.12923 1.21269 0.99075 0.92989 0.96314 1.21544 0.95338 0.97481 1.05268 1.17305 0.92752 0.90357 0.82591 1.20439 1.01887 0.94794 1.36082 0.87730 1.26468 0.95612 1.02086 0.91849 1.69792 1.15731 1.30901 1.27176 0.85737 0.80182 0.77410 0.80464 1.17434 1.17049 1.19095 0.91820 0.93526 0.91158 0.90559 0.93373 0.91215 0.92342 0.91330 0.89947 0.90180 0.86785 0.90050 0.92926 0.89562 0.94812 0.86252 0.85415 0.85964 0.87278 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.67 71.98 0.70 -2.36 16 2 C -0.12 -3.13 5.40 30.59 0.17 -2.97 16 3 C -0.11 -3.32 2.60 -10.79 -0.03 -3.35 16 4 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 5 C -0.15 -3.29 7.73 71.98 0.56 -2.74 16 6 C 0.12 4.14 4.49 86.38 0.39 4.53 16 7 N -0.98 -36.10 2.67 -515.79 -1.38 -37.48 16 8 C 0.11 3.17 5.65 86.38 0.49 3.66 16 9 C -0.17 -5.15 10.23 71.98 0.74 -4.41 16 10 S 2.71 122.04 5.09 -56.49 -0.29 121.76 16 11 O -1.00 -49.65 14.48 -128.00 -1.85 -51.50 16 12 O -1.01 -46.45 15.71 -128.00 -2.01 -48.46 16 13 C -0.78 -37.74 5.71 22.73 0.13 -37.61 16 14 C -0.02 -0.98 9.53 22.22 0.21 -0.77 16 15 C -0.24 -10.13 10.05 22.46 0.23 -9.91 16 16 C -0.08 -3.41 10.02 22.22 0.22 -3.18 16 17 C -0.18 -8.77 8.62 22.73 0.20 -8.58 16 18 C 0.17 8.93 5.47 -21.29 -0.12 8.81 16 19 C -0.50 -25.22 6.17 23.46 0.14 -25.07 16 20 H 0.11 5.43 4.48 -2.91 -0.01 5.41 16 21 C 0.06 2.66 5.33 85.26 0.45 3.11 16 22 N -0.81 -38.34 11.06 21.83 0.24 -38.10 16 23 Si 0.94 35.30 28.85 68.60 1.98 37.28 16 24 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 25 H -0.25 -8.41 7.11 99.48 0.71 -7.70 16 26 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.24 6.46 -2.39 -0.02 1.22 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.32 6.35 -2.38 -0.02 1.31 16 33 H 0.06 1.34 5.94 -2.39 -0.01 1.33 16 34 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 35 H 0.08 2.59 8.07 -2.39 -0.02 2.57 16 36 H 0.08 3.25 3.69 -2.39 -0.01 3.25 16 37 H 0.11 2.65 5.33 -2.39 -0.01 2.63 16 38 H 0.08 2.47 7.04 -2.38 -0.02 2.45 16 39 H 0.05 1.67 8.11 -2.39 -0.02 1.65 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.03 1.25 7.88 -2.39 -0.02 1.23 16 42 H 0.12 4.96 7.32 -2.91 -0.02 4.94 16 43 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 44 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 45 H 0.11 5.57 6.61 -2.91 -0.02 5.55 16 46 H 0.29 12.45 8.30 -92.71 -0.77 11.68 16 Total: -1.00 -60.55 364.52 2.14 -58.41 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: 0.97 Total: 38.93 kcal Atomic # 6 Polarization: -85.31 SS G_CDS: 4.47 Total: -80.83 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -1.14 Total: -75.58 kcal Atomic # 8 Polarization: -96.10 SS G_CDS: -3.86 Total: -99.97 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 1.98 Total: 37.28 kcal Atomic # 16 Polarization: 122.04 SS G_CDS: -0.29 Total: 121.76 kcal Total: -60.55 2.14 -58.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885453900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.185 kcal (2) G-P(sol) polarization free energy of solvation -60.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds