Wall clock time and date at job start Tue Mar 31 2020 16:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47186 * 2 1 4 4 C 1.53000 * 109.47084 * 119.99885 * 2 1 3 5 5 C 1.50706 * 109.47287 * 294.99734 * 4 2 1 6 6 H 1.08001 * 119.99500 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00313 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00119 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99854 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47304 * 89.99764 * 9 7 5 11 11 H 1.48492 * 109.46866 * 209.99949 * 9 7 5 12 12 H 1.48500 * 109.46865 * 329.99581 * 9 7 5 13 13 C 1.52999 * 109.47098 * 239.99688 * 2 1 3 14 14 N 1.46899 * 109.47323 * 65.00231 * 13 2 1 15 15 C 1.46894 * 111.00230 * 179.97438 * 14 13 2 16 16 C 1.52999 * 109.47286 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47362 * 175.03699 * 16 15 14 18 18 C 1.38253 * 119.99700 * 5.76533 * 17 16 15 19 19 C 1.38214 * 119.99727 * 179.97438 * 18 17 16 20 20 C 1.38265 * 120.00077 * 0.02722 * 19 18 17 21 21 C 1.38217 * 119.99849 * 359.97332 * 20 19 18 22 22 C 1.38214 * 119.99847 * 185.49239 * 17 16 15 23 23 S 1.76198 * 120.00297 * 359.97438 * 22 17 16 24 24 C 1.81403 * 104.44764 * 292.57243 * 23 22 17 25 25 O 1.42099 * 104.27799 * 48.64179 * 23 22 17 26 26 O 1.42095 * 104.27932 * 176.50413 * 23 22 17 27 27 H 1.09002 * 109.46991 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46761 * 300.00017 * 1 2 3 29 29 H 1.08993 * 109.47028 * 60.00312 * 1 2 3 30 30 H 1.08999 * 109.47349 * 55.00080 * 4 2 1 31 31 H 1.09008 * 109.46916 * 175.00189 * 4 2 1 32 32 H 0.96993 * 120.00322 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47354 * 304.99938 * 13 2 1 34 34 H 1.09005 * 109.47108 * 185.00190 * 13 2 1 35 35 H 1.00900 * 110.99603 * 303.95401 * 14 13 2 36 36 H 1.09006 * 109.47255 * 59.99832 * 15 14 13 37 37 H 1.08997 * 109.47497 * 299.99822 * 15 14 13 38 38 H 1.09001 * 109.47342 * 295.04250 * 16 15 14 39 39 H 1.09005 * 109.46984 * 55.03834 * 16 15 14 40 40 H 1.07993 * 120.00469 * 0.02562 * 18 17 16 41 41 H 1.07994 * 119.99911 * 180.02562 * 19 18 17 42 42 H 1.07995 * 119.99897 * 179.97438 * 20 19 18 43 43 H 1.07993 * 119.99757 * 179.97438 * 21 20 19 44 44 H 1.09003 * 109.47107 * 55.56782 * 24 23 22 45 45 H 1.09009 * 109.46984 * 175.55877 * 24 23 22 46 46 H 1.08991 * 109.47391 * 295.56247 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9932 -0.4015 3.7284 8 7 1.6458 0.2780 4.7994 9 14 2.9648 -1.9875 3.9028 10 1 4.4180 -1.6830 3.8784 11 1 2.6176 -2.6415 5.1900 12 1 2.6309 -2.8986 2.7788 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.1258 -0.6267 -3.6671 16 6 1.7024 0.1907 -4.8892 17 6 2.2917 -0.4233 -6.1329 18 6 2.9786 -1.6205 -6.0540 19 6 3.5186 -2.1839 -7.1947 20 6 3.3724 -1.5499 -8.4147 21 6 2.6857 -0.3530 -8.4936 22 6 2.1406 0.2077 -7.3533 23 16 1.2584 1.7295 -7.4551 24 6 -0.4571 1.2850 -7.0675 25 8 1.8135 2.5264 -6.4179 26 8 1.3782 2.1135 -8.8180 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -1.7198 1.2952 31 1 3.1264 -0.7994 1.2056 32 1 1.8930 -0.0449 5.6799 33 1 1.6054 -1.7199 -1.2951 34 1 3.1263 -0.7996 -1.2055 35 1 0.6529 0.1792 -2.4753 36 1 1.6921 -1.6248 -3.7300 37 1 3.2127 -0.7039 -3.6400 38 1 0.6151 0.1935 -4.9655 39 1 2.0619 1.2143 -4.7840 40 1 3.0925 -2.1160 -5.1012 41 1 4.0548 -3.1193 -7.1332 42 1 3.7947 -1.9899 -9.3060 43 1 2.5718 0.1424 -9.4464 44 1 -0.4926 0.7825 -6.1009 45 1 -1.0668 2.1878 -7.0302 46 1 -0.8426 0.6178 -7.8383 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896814476.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:44 Heat of formation + Delta-G solvation = -78.767466 kcal Electronic energy + Delta-G solvation = -25026.721291 eV Core-core repulsion = 21428.226726 eV Total energy + Delta-G solvation = -3598.494566 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.56738 -38.56598 -38.17874 -36.98366 -36.20045 -34.53428 -33.21948 -32.27030 -30.33359 -29.85029 -28.71237 -26.63853 -24.88451 -24.12277 -23.26783 -21.83179 -20.57879 -20.00563 -18.95346 -18.59978 -17.30815 -17.11468 -17.02420 -16.77943 -16.39098 -15.92675 -15.74006 -15.56883 -15.31168 -15.16998 -14.79229 -14.32798 -14.10491 -13.96053 -13.86966 -13.60119 -13.50642 -13.45650 -13.22273 -13.15622 -13.08932 -12.83396 -12.66370 -12.48418 -12.12487 -12.11245 -12.03794 -11.92572 -11.73495 -11.45066 -11.38165 -11.16019 -11.01895 -10.72386 -10.30729 -9.78183 -9.28525 -8.24805 -6.27102 -0.86417 -0.14570 0.31029 1.36971 1.38082 1.49865 1.91948 2.38687 2.46942 2.92365 3.10437 3.11723 3.26171 3.66703 3.85741 3.95804 3.99661 4.11609 4.14665 4.20634 4.27418 4.33297 4.40714 4.43631 4.47869 4.57428 4.74301 4.77758 4.83208 4.87872 4.92783 5.02675 5.04958 5.07673 5.13723 5.20418 5.32188 5.36956 5.39555 5.43083 5.57930 5.72932 5.75286 5.89512 6.13597 6.36600 6.56468 6.80877 7.36362 8.92070 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020968 B = 0.002323 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.064021 B =12051.279470 C =13019.446287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 H 0.050 0.950 4 C -0.007 4.007 5 C -0.518 4.518 6 H 0.034 0.966 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.244 1.244 13 C 0.075 3.925 14 N -0.699 5.699 15 C 0.065 3.935 16 C -0.135 4.135 17 C 0.011 3.989 18 C -0.156 4.156 19 C -0.064 4.064 20 C -0.151 4.151 21 C -0.036 4.036 22 C -0.669 4.669 23 S 2.496 3.504 24 C -0.635 4.635 25 O -0.971 6.971 26 O -0.977 6.977 27 H 0.051 0.949 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.020 0.980 31 H 0.013 0.987 32 H 0.264 0.736 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.347 0.653 36 H 0.049 0.951 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.155 0.845 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 -7.246 -32.465 33.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 H 0.068 0.932 4 C -0.045 4.045 5 C -0.556 4.556 6 H 0.052 0.948 7 C -0.197 4.197 8 N -0.596 5.596 9 Si 0.773 3.227 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.168 1.168 13 C -0.054 4.054 14 N -0.332 5.332 15 C -0.064 4.064 16 C -0.172 4.172 17 C 0.009 3.991 18 C -0.174 4.174 19 C -0.082 4.082 20 C -0.170 4.170 21 C -0.055 4.055 22 C -0.756 4.756 23 S 2.680 3.320 24 C -0.788 4.788 25 O -0.968 6.968 26 O -0.975 6.975 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.167 0.833 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.163 0.837 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.166 0.834 44 H 0.167 0.833 45 H 0.173 0.827 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.394 -6.012 -32.469 33.050 hybrid contribution -0.225 -1.705 1.001 1.990 sum -1.620 -7.717 -31.468 32.441 Atomic orbital electron populations 1.21665 0.95129 1.01085 1.00790 1.20911 0.96211 0.98987 0.93206 0.93158 1.19567 0.95764 0.95884 0.93244 1.21475 1.34274 1.08600 0.91288 0.94792 1.26026 0.97099 1.01016 0.95545 1.70074 1.49222 1.41628 0.98718 0.85673 0.79081 0.79914 0.78039 1.19528 1.21250 1.16778 1.21879 1.00096 0.94535 0.88849 1.60393 1.20481 1.50878 1.01416 1.21958 1.00891 0.95469 0.88102 1.21379 1.02344 1.02463 0.91033 1.19582 0.93615 0.93498 0.92406 1.21581 0.99551 0.95952 1.00349 1.21848 0.94626 0.99560 0.92163 1.21632 1.00297 0.95706 0.99347 1.21203 0.92398 0.94596 0.97278 1.30280 1.21486 1.24253 0.99582 1.05019 0.79234 0.74289 0.73434 1.30180 1.19203 1.14951 1.14513 1.93565 1.77577 1.67134 1.58562 1.93507 1.87205 1.81513 1.35235 0.93025 0.94853 0.91320 0.96155 0.96843 0.92723 0.94427 0.91760 0.83272 0.93243 0.91051 0.87330 0.87200 0.83734 0.82794 0.82768 0.83373 0.83322 0.82681 0.82432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 8.77 71.98 0.63 -3.84 16 2 C -0.07 -2.81 2.55 -10.79 -0.03 -2.83 16 3 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.01 -0.31 3.52 29.85 0.10 -0.20 16 5 C -0.52 -29.84 8.96 25.60 0.23 -29.61 16 6 H 0.03 2.16 7.30 -2.91 -0.02 2.14 16 7 C 0.00 -0.06 5.47 84.66 0.46 0.41 16 8 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 9 Si 0.95 44.49 27.47 68.60 1.88 46.37 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 13 C 0.08 2.20 5.14 86.30 0.44 2.65 16 14 N -0.70 -17.07 6.50 -513.90 -3.34 -20.41 16 15 C 0.06 1.22 4.35 86.30 0.38 1.60 16 16 C -0.14 -2.30 4.55 29.85 0.14 -2.16 16 17 C 0.01 0.18 5.83 -19.87 -0.12 0.06 16 18 C -0.16 -2.30 8.97 22.27 0.20 -2.10 16 19 C -0.06 -0.77 10.05 22.27 0.22 -0.55 16 20 C -0.15 -1.85 10.05 22.27 0.22 -1.62 16 21 C -0.04 -0.55 9.50 22.27 0.21 -0.34 16 22 C -0.67 -11.09 5.59 22.27 0.12 -10.97 16 23 S 2.50 39.82 5.26 -56.49 -0.30 39.52 16 24 C -0.64 -3.65 10.66 113.37 1.21 -2.44 16 25 O -0.97 -23.33 15.45 -127.65 -1.97 -25.30 16 26 O -0.98 -21.02 16.75 -127.65 -2.14 -23.15 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.03 1.36 6.95 -2.39 -0.02 1.35 16 29 H 0.07 1.88 6.68 -2.39 -0.02 1.86 16 30 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 31 H 0.01 0.61 7.57 -2.38 -0.02 0.59 16 32 H 0.26 15.67 8.31 -92.71 -0.77 14.89 16 33 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.35 7.43 6.98 -89.69 -0.63 6.80 16 36 H 0.05 0.77 7.56 -2.38 -0.02 0.75 16 37 H 0.07 1.44 7.48 -2.39 -0.02 1.42 16 38 H 0.11 1.15 5.57 -2.39 -0.01 1.14 16 39 H 0.11 2.41 6.06 -2.38 -0.01 2.40 16 40 H 0.15 1.80 5.93 -2.91 -0.02 1.79 16 41 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 43 H 0.15 2.02 7.22 -2.91 -0.02 1.99 16 44 H 0.15 0.52 5.51 -2.39 -0.01 0.51 16 45 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -80.62 371.39 -0.83 -81.45 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.30 Total: 13.82 kcal Atomic # 6 Polarization: -56.39 SS G_CDS: 4.43 Total: -51.95 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -3.04 Total: -80.76 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -4.11 Total: -48.45 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Atomic # 16 Polarization: 39.82 SS G_CDS: -0.30 Total: 39.52 kcal Total: -80.62 -0.83 -81.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896814476.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.687 kcal (2) G-P(sol) polarization free energy of solvation -80.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds