Wall clock time and date at job start Tue Mar 31 2020 14:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47081 * 2 1 4 4 H 1.09000 * 109.47190 * 55.00858 * 3 2 1 5 5 O 1.45200 * 109.47448 * 295.00131 * 3 2 1 6 6 C 1.34228 * 116.99761 * 89.99663 * 5 3 2 7 7 O 1.20825 * 120.00207 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99701 * 179.97438 * 6 5 3 9 9 H 1.08996 * 109.47716 * 300.00827 * 8 6 5 10 10 C 1.50708 * 109.46926 * 60.00830 * 8 6 5 11 11 H 1.08002 * 119.99906 * 34.19467 * 10 8 6 12 12 C 1.37877 * 119.99816 * 214.19822 * 10 8 6 13 13 N 1.31511 * 119.99852 * 6.41591 * 12 10 8 14 14 Si 1.86794 * 119.99665 * 186.42459 * 12 10 8 15 15 H 1.48498 * 109.47596 * 59.99525 * 14 12 10 16 16 H 1.48502 * 109.47116 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47199 * 299.99431 * 14 12 10 18 18 C 1.50701 * 109.46783 * 180.02562 * 8 6 5 19 19 C 1.38238 * 120.00378 * 293.84686 * 18 8 6 20 20 C 1.38230 * 119.99917 * 179.81094 * 19 18 8 21 21 C 1.38232 * 120.00271 * 0.40121 * 20 19 18 22 22 C 1.38233 * 119.99945 * 359.85823 * 21 20 19 23 23 C 1.38234 * 119.99898 * 359.95100 * 22 21 20 24 24 C 1.50702 * 109.46864 * 175.00448 * 3 2 1 25 25 C 1.38648 * 120.79278 * 84.71942 * 24 3 2 26 26 C 1.38205 * 119.16242 * 179.75552 * 25 24 3 27 27 N 1.31877 * 120.76525 * 0.53227 * 26 25 24 28 28 C 1.31875 * 121.72212 * 359.73872 * 27 26 25 29 29 C 1.38201 * 120.76760 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47134 * 59.99397 * 1 2 3 31 31 H 1.09008 * 109.46908 * 299.99609 * 1 2 3 32 32 H 1.08998 * 109.47358 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47573 * 120.00345 * 2 1 3 34 34 H 1.08995 * 109.46930 * 240.00031 * 2 1 3 35 35 H 0.97002 * 119.99542 * 179.97438 * 13 12 10 36 36 H 1.08003 * 119.99684 * 0.02562 * 19 18 8 37 37 H 1.08003 * 119.99681 * 180.23605 * 20 19 18 38 38 H 1.07998 * 119.99898 * 179.83202 * 21 20 19 39 39 H 1.08002 * 120.00098 * 179.97438 * 22 21 20 40 40 H 1.08005 * 120.00123 * 180.02562 * 23 22 21 41 41 H 1.07999 * 120.41720 * 0.02562 * 25 24 3 42 42 H 1.07997 * 119.61791 * 180.25325 * 26 25 24 43 43 H 1.08002 * 119.61576 * 180.02562 * 28 27 26 44 44 H 1.08001 * 120.41992 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 8 1.6559 2.0917 -1.2407 6 6 0.4727 2.7254 -1.2558 7 8 -0.2189 2.7376 -0.2652 8 6 0.0075 3.4227 -2.5082 9 1 0.7245 4.1970 -2.7808 10 6 -0.1014 2.4216 -3.6296 11 1 -0.4065 1.4070 -3.4199 12 6 0.1887 2.8010 -4.9230 13 7 0.6804 3.9969 -5.1628 14 14 -0.1172 1.6165 -6.3345 15 1 -1.5584 1.2614 -6.3794 16 1 0.2736 2.2603 -7.6145 17 1 0.6897 0.3863 -6.1322 18 6 -1.3402 4.0506 -2.2624 19 6 -2.4428 3.2509 -2.0261 20 6 -3.6781 3.8271 -1.7967 21 6 -3.8127 5.2027 -1.8117 22 6 -2.7113 6.0023 -2.0533 23 6 -1.4751 5.4263 -2.2788 24 6 3.5419 1.4442 0.1237 25 6 4.3465 1.3011 -0.9963 26 6 5.7202 1.3125 -0.8446 27 7 6.2660 1.4469 0.3484 28 6 5.5319 1.5799 1.4358 29 6 4.1520 1.5834 1.3611 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 0.8848 4.2637 -6.0727 36 1 -2.3382 2.1760 -2.0174 37 1 -4.5388 3.2023 -1.6084 38 1 -4.7785 5.6528 -1.6352 39 1 -2.8165 7.0772 -2.0654 40 1 -0.6144 6.0510 -2.4671 41 1 3.9055 1.1864 -1.9754 42 1 6.3539 1.2057 -1.7125 43 1 6.0148 1.6881 2.3958 44 1 3.5562 1.6931 2.2553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129595848.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:55 Heat of formation + Delta-G solvation = -48.975941 kcal Electronic energy + Delta-G solvation = -27502.227535 eV Core-core repulsion = 23769.580875 eV Total energy + Delta-G solvation = -3732.646660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84490 -40.94040 -39.77587 -37.67939 -35.66156 -35.08873 -33.07084 -32.93732 -32.15808 -31.59034 -29.46230 -27.91252 -25.99665 -24.50234 -23.73760 -23.40180 -23.19870 -21.87162 -21.13168 -18.95282 -18.58127 -18.19156 -17.46850 -17.06271 -16.99246 -16.73550 -16.48388 -16.12097 -15.82750 -15.41066 -15.02649 -14.91671 -14.66869 -14.54478 -14.19763 -14.09950 -14.02661 -13.64176 -13.38836 -13.30917 -13.12477 -12.83942 -12.78076 -12.61439 -12.43237 -12.24443 -12.05180 -11.89741 -11.73936 -11.54406 -11.34753 -10.95866 -10.69041 -10.61172 -10.43975 -10.10641 -9.61006 -9.36470 -8.26225 -6.36251 0.12695 0.19324 0.68851 0.72217 1.39015 1.42306 1.47854 1.54941 1.97020 2.39111 2.82400 3.03750 3.20243 3.37446 3.58138 3.79689 3.83152 4.05117 4.10014 4.18199 4.19302 4.20883 4.26437 4.38191 4.44810 4.46226 4.52327 4.66880 4.76073 4.80443 4.89190 4.89936 4.90878 4.94016 5.03948 5.08199 5.26703 5.30207 5.34447 5.38508 5.59143 5.62861 5.72888 5.74503 5.77302 5.85713 6.13083 6.34907 6.65604 6.97401 7.08990 7.29669 8.83214 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011132 B = 0.004401 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.746803 B = 6360.630364 C = 7505.482343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.118 3.882 4 H 0.088 0.912 5 O -0.346 6.346 6 C 0.482 3.518 7 O -0.536 6.536 8 C 0.075 3.925 9 H 0.072 0.928 10 C -0.515 4.515 11 H 0.056 0.944 12 C 0.034 3.966 13 N -0.908 5.908 14 Si 0.955 3.045 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.267 1.267 18 C -0.047 4.047 19 C -0.105 4.105 20 C -0.132 4.132 21 C -0.137 4.137 22 C -0.127 4.127 23 C -0.141 4.141 24 C -0.053 4.053 25 C -0.157 4.157 26 C 0.093 3.907 27 N -0.504 5.504 28 C 0.096 3.904 29 C -0.160 4.160 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.269 0.731 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.106 0.894 41 H 0.131 0.869 42 H 0.175 0.825 43 H 0.190 0.810 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 -4.024 10.351 11.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.063 3.937 4 H 0.106 0.894 5 O -0.263 6.263 6 C 0.328 3.672 7 O -0.427 6.427 8 C 0.056 3.944 9 H 0.090 0.910 10 C -0.553 4.553 11 H 0.074 0.926 12 C -0.168 4.168 13 N -0.545 5.545 14 Si 0.779 3.221 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.048 4.048 19 C -0.124 4.124 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.145 4.145 23 C -0.159 4.159 24 C -0.061 4.061 25 C -0.177 4.177 26 C -0.063 4.063 27 N -0.214 5.214 28 C -0.061 4.061 29 C -0.179 4.179 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.157 0.843 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.125 0.875 41 H 0.149 0.851 42 H 0.192 0.808 43 H 0.207 0.793 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.591 -3.917 10.579 11.574 hybrid contribution -0.937 -0.401 -1.183 1.561 sum 1.653 -4.318 9.396 10.472 Atomic orbital electron populations 1.21772 0.95160 1.01938 1.01390 1.21889 0.96512 0.93654 1.04046 1.21637 0.90849 0.94805 0.86413 0.89379 1.86669 1.37599 1.63580 1.38458 1.24555 0.77992 0.74595 0.90100 1.90514 1.55402 1.60113 1.36662 1.17746 0.92165 0.96234 0.88285 0.91025 1.20636 1.47827 0.95764 0.91036 0.92595 1.25598 0.93248 0.96881 1.01069 1.69966 1.42199 1.20572 1.21753 0.85654 0.78959 0.79221 0.78244 1.19636 1.20541 1.19149 1.19995 0.95798 0.93559 0.95406 1.20859 0.93067 0.98966 0.99477 1.21348 0.96918 0.95974 1.00773 1.21328 0.99333 0.93391 1.01435 1.21309 0.92248 1.00672 1.00289 1.21142 0.98523 0.94260 1.01952 1.20171 0.93771 0.97278 0.94882 1.22143 0.95337 1.00324 0.99928 1.23063 0.92498 0.94865 0.95906 1.67734 1.41687 1.12358 0.99583 1.23258 0.90395 0.94337 0.98101 1.22226 0.96939 1.01127 0.97655 0.95389 0.92426 0.90834 0.87746 0.91255 0.92190 0.88296 0.84313 0.83279 0.84066 0.87538 0.85138 0.80758 0.79292 0.82205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 8.57 71.98 0.62 -3.89 16 2 C -0.12 -3.48 5.63 30.59 0.17 -3.31 16 3 C 0.12 3.81 2.50 29.85 0.07 3.89 16 4 H 0.09 2.88 7.09 -2.39 -0.02 2.87 16 5 O -0.35 -14.53 8.99 -51.39 -0.46 -14.99 16 6 C 0.48 22.00 5.60 71.24 0.40 22.40 16 7 O -0.54 -24.31 12.57 21.97 0.28 -24.03 16 8 C 0.08 3.75 2.55 -13.03 -0.03 3.71 16 9 H 0.07 3.94 6.99 -2.39 -0.02 3.93 16 10 C -0.52 -27.00 7.60 25.60 0.19 -26.80 16 11 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16 12 C 0.03 1.78 5.45 84.66 0.46 2.24 16 13 N -0.91 -49.98 12.78 21.45 0.27 -49.71 16 14 Si 0.95 41.78 29.54 68.60 2.03 43.81 16 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 C -0.05 -2.19 4.30 -19.86 -0.09 -2.27 16 19 C -0.11 -4.55 8.32 22.27 0.19 -4.36 16 20 C -0.13 -4.68 10.05 22.27 0.22 -4.45 16 21 C -0.14 -4.39 10.05 22.27 0.22 -4.16 16 22 C -0.13 -4.44 10.05 22.27 0.22 -4.22 16 23 C -0.14 -6.01 9.67 22.27 0.22 -5.79 16 24 C -0.05 -1.50 5.04 -19.66 -0.10 -1.60 16 25 C -0.16 -4.62 9.44 22.36 0.21 -4.41 16 26 C 0.09 2.41 11.18 84.68 0.95 3.35 16 27 N -0.50 -12.99 10.36 -195.84 -2.03 -15.02 16 28 C 0.10 2.03 11.18 84.68 0.95 2.98 16 29 C -0.16 -3.57 9.80 22.36 0.22 -3.35 16 30 H 0.03 1.06 6.06 -2.39 -0.01 1.04 16 31 H 0.06 1.79 7.80 -2.38 -0.02 1.77 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 36 H 0.10 4.39 7.89 -2.91 -0.02 4.36 16 37 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 38 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 39 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 40 H 0.11 4.55 7.95 -2.91 -0.02 4.53 16 41 H 0.13 4.17 7.72 -2.91 -0.02 4.15 16 42 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 44 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -63.85 372.93 6.17 -57.68 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.99 Total: 32.31 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 5.10 Total: -30.05 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -1.76 Total: -64.73 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.19 Total: -39.02 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -63.85 6.17 -57.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129595848.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.703 kcal (2) G-P(sol) polarization free energy of solvation -63.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds