Wall clock time and date at job start Tue Mar 31 2020 14:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46665 * 2 1 4 4 H 1.08999 * 109.47327 * 55.00798 * 3 2 1 5 5 O 1.45192 * 109.47670 * 294.99849 * 3 2 1 6 6 C 1.34228 * 116.99964 * 89.99998 * 5 3 2 7 7 O 1.20824 * 120.00308 * 0.02562 * 6 5 3 8 8 C 1.50708 * 120.00055 * 180.02562 * 6 5 3 9 9 H 1.08996 * 109.47341 * 60.00067 * 8 6 5 10 10 C 1.50704 * 109.47128 * 299.99967 * 8 6 5 11 11 H 1.08002 * 119.99575 * 324.88033 * 10 8 6 12 12 C 1.37874 * 119.99897 * 144.87213 * 10 8 6 13 13 N 1.31514 * 119.99842 * 5.19494 * 12 10 8 14 14 Si 1.86797 * 120.00030 * 185.19474 * 12 10 8 15 15 H 1.48499 * 109.47137 * 90.00078 * 14 12 10 16 16 H 1.48500 * 109.47569 * 210.00229 * 14 12 10 17 17 H 1.48502 * 109.47415 * 330.00073 * 14 12 10 18 18 C 1.50699 * 109.46936 * 180.02562 * 8 6 5 19 19 C 1.38229 * 120.00336 * 66.00772 * 18 8 6 20 20 C 1.38238 * 120.00070 * 179.78777 * 19 18 8 21 21 C 1.38232 * 119.99922 * 0.43919 * 20 19 18 22 22 C 1.38235 * 120.00025 * 359.81324 * 21 20 19 23 23 C 1.38237 * 120.00178 * 359.97438 * 22 21 20 24 24 C 1.50709 * 109.46637 * 174.99748 * 3 2 1 25 25 C 1.38648 * 120.78480 * 84.72386 * 24 3 2 26 26 C 1.38213 * 119.16013 * 179.75373 * 25 24 3 27 27 N 1.31873 * 120.75993 * 0.53066 * 26 25 24 28 28 C 1.31868 * 121.72667 * 359.74232 * 27 26 25 29 29 C 1.38209 * 120.76649 * 359.97438 * 28 27 26 30 30 H 1.08994 * 109.47343 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47221 * 59.99431 * 1 2 3 32 32 H 1.08999 * 109.47224 * 299.99946 * 1 2 3 33 33 H 1.08993 * 109.46894 * 120.00013 * 2 1 3 34 34 H 1.09004 * 109.46858 * 240.00358 * 2 1 3 35 35 H 0.97004 * 119.99824 * 179.97438 * 13 12 10 36 36 H 1.08003 * 120.00084 * 359.97438 * 19 18 8 37 37 H 1.08000 * 120.00357 * 180.27533 * 20 19 18 38 38 H 1.08003 * 120.00290 * 179.83431 * 21 20 19 39 39 H 1.08001 * 120.00147 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.00446 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.42509 * 359.97438 * 25 24 3 42 42 H 1.07998 * 119.62067 * 180.24644 * 26 25 24 43 43 H 1.07996 * 119.61513 * 180.02562 * 28 27 26 44 44 H 1.07995 * 120.41944 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6559 2.0918 -1.2406 6 6 0.4727 2.7255 -1.2559 7 8 -0.2190 2.7377 -0.2653 8 6 0.0069 3.4217 -2.5087 9 1 -0.0720 2.6972 -3.3191 10 6 0.9981 4.4922 -2.8866 11 1 1.5111 5.0492 -2.1165 12 6 1.2502 4.7602 -4.2153 13 7 0.5529 4.1551 -5.1519 14 14 2.5819 5.9829 -4.6852 15 1 3.8756 5.2704 -4.8404 16 1 2.2214 6.6392 -5.9676 17 1 2.7077 7.0111 -3.6212 18 6 -1.3407 4.0499 -2.2628 19 6 -1.4637 5.0920 -1.3629 20 6 -2.6991 5.6711 -1.1407 21 6 -3.8130 5.2020 -1.8115 22 6 -3.6909 4.1564 -2.7075 23 6 -2.4548 3.5802 -2.9330 24 6 3.5419 1.4443 0.1239 25 6 4.3465 1.3012 -0.9961 26 6 5.7202 1.3128 -0.8444 27 7 6.2659 1.4472 0.3486 28 6 5.5318 1.5800 1.4359 29 6 4.1518 1.5834 1.3612 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 0.7300 4.3439 -6.0868 36 1 -0.5941 5.4558 -0.8358 37 1 -2.7945 6.4882 -0.4409 38 1 -4.7787 5.6526 -1.6359 39 1 -4.5613 3.7897 -3.2313 40 1 -2.3594 2.7631 -3.6327 41 1 3.9055 1.1858 -1.9752 42 1 6.3540 1.2059 -1.7123 43 1 6.0146 1.6883 2.3959 44 1 3.5560 1.6930 2.2553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129595849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:00 Heat of formation + Delta-G solvation = -49.226598 kcal Electronic energy + Delta-G solvation = -27500.458263 eV Core-core repulsion = 23767.800734 eV Total energy + Delta-G solvation = -3732.657529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -41.84674 -40.93888 -39.77185 -37.68724 -35.68493 -35.08436 -33.08007 -32.93438 -32.15698 -31.58049 -29.46309 -27.95238 -25.97747 -24.50607 -23.74435 -23.41791 -23.18399 -21.86575 -21.13702 -19.04153 -18.39657 -18.27038 -17.55444 -17.10889 -16.94442 -16.74762 -16.47447 -16.13593 -15.78616 -15.45632 -15.00321 -14.95157 -14.58277 -14.55013 -14.36117 -14.07191 -13.98931 -13.52315 -13.48735 -13.36397 -13.11781 -12.86217 -12.78845 -12.61674 -12.45033 -12.25222 -12.01971 -11.92383 -11.75514 -11.53319 -11.37445 -10.96227 -10.70616 -10.62006 -10.43801 -10.10316 -9.59893 -9.34800 -8.27893 -6.38947 0.13084 0.19732 0.70528 0.72975 1.36752 1.40286 1.46651 1.54069 1.96388 2.37442 2.82514 3.02600 3.20319 3.36924 3.58030 3.80331 3.82167 4.05025 4.09755 4.18147 4.18934 4.20953 4.27055 4.38392 4.44429 4.46048 4.51635 4.66733 4.75527 4.80288 4.88733 4.90135 4.90903 4.93365 5.01258 5.05885 5.27164 5.28072 5.34601 5.38384 5.57155 5.61704 5.72965 5.75282 5.77625 5.84997 6.13595 6.35771 6.62838 6.97511 7.07998 7.27712 8.81192 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010817 B = 0.004741 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.795736 B = 5904.386919 C = 7567.517117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.117 3.883 4 H 0.086 0.914 5 O -0.346 6.346 6 C 0.481 3.519 7 O -0.536 6.536 8 C 0.078 3.922 9 H 0.073 0.927 10 C -0.519 4.519 11 H 0.051 0.949 12 C 0.036 3.964 13 N -0.903 5.903 14 Si 0.953 3.047 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.272 1.272 18 C -0.042 4.042 19 C -0.110 4.110 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.127 4.127 23 C -0.137 4.137 24 C -0.053 4.053 25 C -0.156 4.156 26 C 0.091 3.909 27 N -0.505 5.505 28 C 0.095 3.905 29 C -0.161 4.161 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.270 0.730 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.108 0.892 41 H 0.133 0.867 42 H 0.175 0.825 43 H 0.189 0.811 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.478 -5.894 9.676 11.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C 0.062 3.938 4 H 0.104 0.896 5 O -0.263 6.263 6 C 0.327 3.673 7 O -0.426 6.426 8 C 0.059 3.941 9 H 0.091 0.909 10 C -0.557 4.557 11 H 0.069 0.931 12 C -0.167 4.167 13 N -0.540 5.540 14 Si 0.778 3.222 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.196 1.196 18 C -0.043 4.043 19 C -0.128 4.128 20 C -0.150 4.150 21 C -0.156 4.156 22 C -0.145 4.145 23 C -0.155 4.155 24 C -0.061 4.061 25 C -0.176 4.176 26 C -0.065 4.065 27 N -0.214 5.214 28 C -0.062 4.062 29 C -0.180 4.180 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.156 0.844 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.126 0.874 41 H 0.151 0.849 42 H 0.192 0.808 43 H 0.206 0.794 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.188 -5.933 9.850 11.705 hybrid contribution -0.260 0.642 -0.750 1.021 sum 1.927 -5.292 9.100 10.702 Atomic orbital electron populations 1.21773 0.95101 1.02089 1.01261 1.21913 0.96479 0.93408 1.04335 1.21646 0.90833 0.94829 0.86457 0.89607 1.86658 1.37732 1.63481 1.38424 1.24575 0.77893 0.73774 0.91048 1.90516 1.55691 1.59490 1.36927 1.17716 0.91519 0.95668 0.89208 0.90948 1.20669 1.23253 1.19389 0.92352 0.93094 1.25566 0.97472 0.97476 0.96148 1.69989 1.39930 1.43226 1.00836 0.85619 0.79636 0.79132 0.77787 1.19433 1.20398 1.19634 1.19948 0.94035 0.95705 0.94620 1.20851 0.97437 0.96404 0.98128 1.21325 0.92416 1.00509 1.00772 1.21318 0.99152 0.97607 0.97489 1.21317 0.96923 0.97221 0.99042 1.21122 0.93089 1.00970 1.00307 1.20169 0.93871 0.97186 0.94849 1.22139 0.95278 1.00223 0.99928 1.23069 0.92585 0.94938 0.95881 1.67721 1.41711 1.12378 0.99604 1.23241 0.90417 0.94421 0.98087 1.22218 0.96933 1.01158 0.97720 0.90465 0.95621 0.92557 0.87688 0.90838 0.92124 0.88668 0.84446 0.83305 0.84019 0.87391 0.84943 0.80783 0.79379 0.82301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 8.57 71.98 0.62 -3.63 16 2 C -0.12 -3.31 5.63 30.60 0.17 -3.14 16 3 C 0.12 3.77 2.50 29.85 0.07 3.84 16 4 H 0.09 2.85 7.09 -2.39 -0.02 2.83 16 5 O -0.35 -14.39 8.99 -51.39 -0.46 -14.85 16 6 C 0.48 21.94 5.60 71.24 0.40 22.34 16 7 O -0.54 -24.33 12.56 21.97 0.28 -24.05 16 8 C 0.08 3.91 2.48 -13.03 -0.03 3.87 16 9 H 0.07 3.92 7.13 -2.39 -0.02 3.90 16 10 C -0.52 -27.65 7.60 25.60 0.19 -27.45 16 11 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 12 C 0.04 1.89 5.45 84.65 0.46 2.35 16 13 N -0.90 -49.49 12.84 21.45 0.28 -49.22 16 14 Si 0.95 42.32 29.54 68.60 2.03 44.35 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 C -0.04 -2.00 4.30 -19.87 -0.09 -2.08 16 19 C -0.11 -4.84 8.31 22.27 0.18 -4.66 16 20 C -0.13 -4.78 10.05 22.27 0.22 -4.55 16 21 C -0.14 -4.48 10.05 22.27 0.22 -4.25 16 22 C -0.13 -4.47 10.05 22.27 0.22 -4.24 16 23 C -0.14 -5.85 9.67 22.27 0.22 -5.63 16 24 C -0.05 -1.51 5.04 -19.67 -0.10 -1.61 16 25 C -0.16 -4.58 9.44 22.36 0.21 -4.37 16 26 C 0.09 2.41 11.18 84.68 0.95 3.36 16 27 N -0.50 -13.31 10.36 -195.84 -2.03 -15.34 16 28 C 0.09 2.08 11.18 84.68 0.95 3.03 16 29 C -0.16 -3.69 9.80 22.36 0.22 -3.47 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.02 0.90 6.06 -2.38 -0.01 0.89 16 32 H 0.06 1.70 7.80 -2.39 -0.02 1.68 16 33 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.07 1.96 8.14 -2.38 -0.02 1.95 16 35 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 36 H 0.10 4.35 7.89 -2.91 -0.02 4.33 16 37 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 38 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 39 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 40 H 0.11 4.58 7.96 -2.91 -0.02 4.56 16 41 H 0.13 4.14 7.72 -2.91 -0.02 4.11 16 42 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 43 H 0.19 2.70 8.06 -2.91 -0.02 2.67 16 44 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -64.28 373.04 6.18 -58.11 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.99 Total: 31.30 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 5.10 Total: -30.30 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -1.75 Total: -64.55 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.19 Total: -38.90 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -64.28 6.18 -58.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129595849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.881 kcal (2) G-P(sol) polarization free energy of solvation -64.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds