Wall clock time and date at job start Tue Mar 31 2020 16:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46790 * 2 1 4 4 O 1.42895 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.35901 * 117.00234 * 180.02562 * 4 3 2 6 6 C 1.38818 * 120.01528 * 359.72074 * 5 4 3 7 7 C 1.38184 * 120.08856 * 179.77099 * 6 5 4 8 8 C 1.38152 * 120.12563 * 0.50509 * 7 6 5 9 9 C 1.38926 * 120.04095 * 359.74913 * 8 7 6 10 10 N 1.39800 * 120.04478 * 179.97438 * 9 8 7 11 11 C 1.34780 * 119.99847 * 213.15869 * 10 9 8 12 12 O 1.21623 * 119.99566 * 5.06355 * 11 10 9 13 13 C 1.47380 * 120.00141 * 185.05864 * 11 10 9 14 14 C 1.39250 * 120.28185 * 5.74948 * 13 11 10 15 15 C 1.38209 * 120.08910 * 179.97438 * 14 13 11 16 16 C 1.38845 * 120.67758 * 0.04759 * 15 14 13 17 17 C 1.37590 * 120.57783 * 359.97438 * 16 15 14 18 18 C 1.40711 * 119.87769 * 359.69976 * 17 16 15 19 19 C 1.40875 * 120.32648 * 180.29788 * 18 17 16 20 20 H 1.08003 * 120.00021 * 213.91603 * 19 18 17 21 21 C 1.40277 * 119.99887 * 33.92278 * 19 18 17 22 22 N 1.30631 * 120.00275 * 9.19893 * 21 19 18 23 23 Si 1.86800 * 120.00076 * 189.19792 * 21 19 18 24 24 H 1.48500 * 109.47118 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47104 * 119.99524 * 23 21 19 26 26 H 1.48497 * 109.47367 * 240.00066 * 23 21 19 27 27 C 1.38577 * 120.02091 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.47456 * 60.00073 * 1 2 3 29 29 H 1.09007 * 109.46739 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47182 * 299.99631 * 1 2 3 31 31 H 1.09001 * 109.47182 * 240.00369 * 2 1 3 32 32 H 1.08994 * 109.47234 * 120.00575 * 2 1 3 33 33 H 1.09001 * 109.46957 * 60.00231 * 3 2 1 34 34 H 1.09003 * 109.47570 * 300.00098 * 3 2 1 35 35 H 1.07995 * 119.95588 * 359.97438 * 6 5 4 36 36 H 1.07997 * 119.93464 * 180.23203 * 7 6 5 37 37 H 1.08000 * 119.97782 * 179.76810 * 8 7 6 38 38 H 0.96990 * 120.00373 * 33.16340 * 10 9 8 39 39 H 1.07997 * 119.96036 * 0.02562 * 14 13 11 40 40 H 1.07997 * 119.65893 * 180.02562 * 15 14 13 41 41 H 1.07997 * 119.71066 * 179.97438 * 16 15 14 42 42 H 1.07992 * 120.06046 * 180.02562 * 17 16 15 43 43 H 0.96998 * 119.99784 * 180.02562 * 22 21 19 44 44 H 1.07994 * 120.06370 * 359.95709 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0859 2.6534 -0.0001 6 6 3.3302 3.8178 -0.0050 7 6 3.9559 5.0499 0.0003 8 6 5.3353 5.1270 -0.0002 9 6 6.0968 3.9650 -0.0007 10 7 7.4927 4.0429 -0.0017 11 6 8.2195 3.1048 -0.6406 12 8 7.6615 2.2432 -1.2929 13 6 9.6903 3.1231 -0.5488 14 6 10.3302 4.0316 0.2904 15 6 11.7097 4.0449 0.3738 16 6 12.4733 3.1587 -0.3742 17 6 11.8698 2.2498 -1.2126 18 6 10.4667 2.2108 -1.3107 19 6 9.8387 1.2799 -2.1613 20 1 8.9214 1.5434 -2.6669 21 6 10.4047 0.0105 -2.3515 22 7 11.4079 -0.3753 -1.6090 23 14 9.7240 -1.1281 -3.6666 24 1 8.5963 -0.4600 -4.3645 25 1 10.7932 -1.4479 -4.6463 26 1 9.2409 -2.3819 -3.0342 27 6 5.4697 2.7264 -0.0001 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 2.2517 3.7608 -0.0095 36 1 3.3656 5.9542 0.0003 37 1 5.8219 6.0911 0.0001 38 1 7.9380 4.7720 0.4574 39 1 9.7479 4.7262 0.8775 40 1 12.1988 4.7522 1.0272 41 1 13.5502 3.1831 -0.2973 42 1 12.4717 1.5641 -1.7902 43 1 11.7994 -1.2529 -1.7409 44 1 6.0592 1.8216 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141571817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:55 Heat of formation + Delta-G solvation = -50.578919 kcal Electronic energy + Delta-G solvation = -26432.657365 eV Core-core repulsion = 22699.941195 eV Total energy + Delta-G solvation = -3732.716170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.62027 -40.62440 -39.08324 -38.08120 -35.88432 -35.30106 -34.71934 -32.14243 -31.60192 -31.15451 -29.89507 -27.49618 -27.29683 -24.85256 -23.66813 -23.20334 -22.72647 -22.00765 -21.02627 -19.78893 -19.09540 -18.15732 -17.29173 -17.25199 -17.03482 -16.95372 -16.62342 -15.99445 -15.79337 -15.64267 -15.08791 -15.06346 -14.63826 -14.57327 -14.42022 -14.03683 -13.74606 -13.58838 -13.39194 -13.05415 -12.90970 -12.89681 -12.66274 -12.56790 -12.47648 -12.35387 -12.25854 -11.94211 -11.75868 -11.61205 -11.52137 -11.20259 -11.10645 -10.31977 -9.52594 -9.36775 -9.25451 -8.95294 -8.72773 -6.41402 0.18903 0.48923 0.59950 0.98094 1.29582 1.44004 1.45508 2.05472 2.17515 2.23897 2.43008 2.71797 2.89273 3.68354 3.84441 3.92309 3.99984 4.12767 4.20128 4.29637 4.30459 4.31971 4.35643 4.53166 4.54027 4.56697 4.62588 4.77706 4.81000 4.92665 5.06965 5.09542 5.15124 5.20985 5.28912 5.30420 5.34182 5.41211 5.43395 5.52829 5.58325 5.78770 5.94788 6.03590 6.07760 6.30382 6.51179 6.57174 6.70639 6.85578 6.94211 7.50129 8.24426 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.003668 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.920337 B = 7631.544323 C = 9766.894339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.052 3.948 4 O -0.344 6.344 5 C 0.135 3.865 6 C -0.229 4.229 7 C -0.050 4.050 8 C -0.187 4.187 9 C 0.184 3.816 10 N -0.670 5.670 11 C 0.556 3.444 12 O -0.554 6.554 13 C -0.283 4.283 14 C -0.053 4.053 15 C -0.233 4.233 16 C -0.090 4.090 17 C -0.175 4.175 18 C 0.116 3.884 19 C -0.455 4.455 20 H 0.080 0.920 21 C 0.034 3.966 22 N -0.818 5.818 23 Si 0.975 3.025 24 H -0.272 1.272 25 H -0.250 1.250 26 H -0.268 1.268 27 C -0.198 4.198 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.156 0.844 36 H 0.171 0.829 37 H 0.155 0.845 38 H 0.421 0.579 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.122 0.878 42 H 0.102 0.898 43 H 0.290 0.710 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.050 8.556 5.044 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.022 4.022 4 O -0.259 6.259 5 C 0.089 3.911 6 C -0.248 4.248 7 C -0.068 4.068 8 C -0.207 4.207 9 C 0.088 3.912 10 N -0.317 5.317 11 C 0.352 3.648 12 O -0.433 6.433 13 C -0.288 4.288 14 C -0.071 4.071 15 C -0.252 4.252 16 C -0.108 4.108 17 C -0.195 4.195 18 C 0.112 3.888 19 C -0.484 4.484 20 H 0.098 0.902 21 C -0.181 4.181 22 N -0.444 5.444 23 Si 0.797 3.203 24 H -0.197 1.197 25 H -0.174 1.174 26 H -0.192 1.192 27 C -0.219 4.219 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.173 0.827 36 H 0.189 0.811 37 H 0.172 0.828 38 H 0.260 0.740 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.140 0.860 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.121 7.522 4.633 18.383 hybrid contribution 0.377 -0.788 -0.384 0.954 sum -15.744 6.735 4.249 17.643 Atomic orbital electron populations 1.21657 0.91952 1.03250 1.03015 1.21545 0.97803 0.94192 1.02916 1.23162 0.76609 0.99820 1.02632 1.86063 1.23498 1.27686 1.88654 1.18867 0.91101 0.85287 0.95859 1.21465 1.01025 0.91448 1.10836 1.21161 0.93331 0.98027 0.94301 1.21139 0.94610 0.96666 1.08334 1.17712 0.83127 0.93527 0.96840 1.43448 1.03959 1.29497 1.54802 1.18668 0.88077 0.80352 0.77739 1.90703 1.73280 1.37633 1.41714 1.19680 0.90497 1.09189 1.09415 1.21089 0.95216 0.95577 0.95249 1.20827 0.93358 1.04390 1.06636 1.21221 0.99510 0.94706 0.95384 1.21310 0.94175 1.00701 1.03285 1.17852 0.92262 0.90014 0.88669 1.20179 1.07973 0.97767 1.22491 0.90205 1.26757 0.93872 1.00209 0.97305 1.69732 1.20119 1.20704 1.33894 0.85262 0.79230 0.77474 0.78372 1.19682 1.17350 1.19241 1.20299 0.92847 0.97928 1.10835 0.91634 0.91096 0.91268 0.92114 0.91556 0.90225 0.90924 0.82663 0.81143 0.82759 0.73983 0.84714 0.84616 0.85981 0.88025 0.89884 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.13 -2.40 6.30 30.59 0.19 -2.21 16 3 C 0.05 1.11 4.74 71.98 0.34 1.45 16 4 O -0.34 -11.40 10.13 -92.43 -0.94 -12.34 16 5 C 0.13 4.54 6.68 22.49 0.15 4.69 16 6 C -0.23 -5.55 9.04 22.40 0.20 -5.34 16 7 C -0.05 -1.05 10.03 22.24 0.22 -0.83 16 8 C -0.19 -4.77 9.96 22.41 0.22 -4.54 16 9 C 0.18 6.50 6.28 38.18 0.24 6.74 16 10 N -0.67 -24.79 5.27 -306.53 -1.62 -26.40 16 11 C 0.56 26.99 7.46 86.65 0.65 27.63 16 12 O -0.55 -31.52 11.24 -4.10 -0.05 -31.57 16 13 C -0.28 -13.98 5.92 -19.70 -0.12 -14.10 16 14 C -0.05 -2.10 9.50 22.51 0.21 -1.89 16 15 C -0.23 -8.96 10.03 22.41 0.22 -8.73 16 16 C -0.09 -3.85 10.01 22.26 0.22 -3.63 16 17 C -0.18 -9.07 8.62 22.72 0.20 -8.88 16 18 C 0.12 6.47 5.51 -21.11 -0.12 6.35 16 19 C -0.46 -26.83 7.70 23.41 0.18 -26.65 16 20 H 0.08 5.00 5.88 -2.91 -0.02 4.98 16 21 C 0.03 1.85 5.26 85.37 0.45 2.30 16 22 N -0.82 -44.38 11.12 21.88 0.24 -44.14 16 23 Si 0.98 43.01 29.57 68.60 2.03 45.04 16 24 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 25 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 C -0.20 -8.06 8.59 22.49 0.19 -7.86 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.35 7.67 -2.39 -0.02 1.34 16 34 H 0.07 1.34 7.65 -2.39 -0.02 1.32 16 35 H 0.16 2.66 6.29 -2.91 -0.02 2.65 16 36 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 38 H 0.42 12.08 6.92 -92.72 -0.64 11.44 16 39 H 0.14 4.05 6.48 -2.91 -0.02 4.03 16 40 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 41 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.10 5.49 6.57 -2.91 -0.02 5.47 16 43 H 0.29 14.16 8.29 -92.71 -0.77 13.39 16 44 H 0.10 4.85 6.39 -2.91 -0.02 4.83 16 Total: -1.00 -74.62 365.29 4.44 -70.18 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: 0.39 Total: 35.72 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 4.38 Total: -36.50 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -1.37 Total: -70.54 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -0.98 Total: -43.91 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -74.62 4.44 -70.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141571817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.603 kcal (2) G-P(sol) polarization free energy of solvation -74.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds