Wall clock time and date at job start Tue Mar 31 2020 14:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47153 * 2 1 4 4 H 1.09006 * 109.47408 * 305.26256 * 3 2 1 5 5 C 1.50698 * 109.47313 * 185.26078 * 3 2 1 6 6 H 1.08004 * 119.99851 * 245.24651 * 5 3 2 7 7 C 1.37879 * 120.00181 * 64.97605 * 5 3 2 8 8 N 1.31516 * 119.99906 * 6.91529 * 7 5 3 9 9 Si 1.86800 * 120.00123 * 186.92100 * 7 5 3 10 10 H 1.48502 * 109.47166 * 93.77000 * 9 7 5 11 11 H 1.48492 * 109.47119 * 213.76827 * 9 7 5 12 12 H 1.48500 * 109.46982 * 333.77251 * 9 7 5 13 13 N 1.46502 * 109.47249 * 65.25854 * 3 2 1 14 14 C 1.34780 * 120.00046 * 275.00424 * 13 3 2 15 15 O 1.21584 * 119.99783 * 359.97438 * 14 13 3 16 16 C 1.47532 * 119.99963 * 179.97438 * 14 13 3 17 17 C 1.39760 * 120.13586 * 359.97438 * 16 14 13 18 18 C 1.37884 * 120.15342 * 180.02562 * 17 16 14 19 19 C 1.38297 * 120.44001 * 0.02562 * 18 17 16 20 20 C 1.39179 * 120.26607 * 0.02562 * 19 18 17 21 21 C 1.48337 * 120.08391 * 180.02562 * 20 19 18 22 22 C 1.39356 * 120.12178 * 129.72528 * 21 20 19 23 23 C 1.38020 * 119.87271 * 179.71994 * 22 21 20 24 24 C 1.38329 * 120.12015 * 0.55114 * 23 22 21 25 25 C 1.38327 * 120.24758 * 359.72259 * 24 23 22 26 26 C 1.38009 * 120.12900 * 359.97438 * 25 24 23 27 27 C 1.39818 * 119.83744 * 359.71973 * 20 19 18 28 28 O 1.35580 * 120.21643 * 180.29713 * 27 20 19 29 29 H 1.09001 * 109.46931 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47045 * 299.99956 * 1 2 3 31 31 H 1.08998 * 109.46836 * 60.00018 * 1 2 3 32 32 H 1.09004 * 109.47019 * 240.00153 * 2 1 3 33 33 H 1.08999 * 109.47306 * 120.00225 * 2 1 3 34 34 H 0.96997 * 119.99811 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00151 * 94.99988 * 13 3 2 36 36 H 1.07997 * 119.92232 * 0.02562 * 17 16 14 37 37 H 1.08005 * 119.77865 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.86689 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.06947 * 359.97438 * 22 21 20 40 40 H 1.07994 * 119.94132 * 180.29705 * 23 22 21 41 41 H 1.07998 * 119.87609 * 179.74350 * 24 23 22 42 42 H 1.07997 * 119.93247 * 179.97438 * 25 24 23 43 43 H 1.07991 * 120.06356 * 180.02562 * 26 25 24 44 44 H 0.96699 * 114.00105 * 270.25473 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9829 -0.8391 5 6 3.5413 1.4445 -0.1303 6 1 4.1532 1.8108 0.6809 7 6 4.1340 0.9737 -1.2827 8 7 3.3917 0.6504 -2.3191 9 14 5.9913 0.7948 -1.3720 10 1 6.3735 -0.5913 -1.0006 11 1 6.4502 1.0811 -2.7549 12 1 6.6265 1.7523 -0.4313 13 7 1.6578 2.0956 1.2544 14 6 0.4409 2.6623 1.3756 15 8 -0.3394 2.6319 0.4437 16 6 0.0558 3.3195 2.6391 17 6 0.9504 3.3557 3.7123 18 6 0.5907 3.9694 4.8935 19 6 -0.6557 4.5534 5.0284 20 6 -1.5609 4.5269 3.9715 21 6 -2.8964 5.1550 4.1204 22 6 -3.3608 6.0477 3.1563 23 6 -4.6067 6.6247 3.2971 24 6 -5.3891 6.3272 4.3984 25 6 -4.9307 5.4462 5.3613 26 6 -3.6891 4.8585 5.2277 27 6 -1.2060 3.9123 2.7668 28 8 -2.0795 3.8873 1.7303 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8086 0.3188 -3.1297 35 1 2.2804 2.1202 1.9978 36 1 1.9257 2.9019 3.6162 37 1 1.2866 3.9934 5.7191 38 1 -0.9276 5.0319 5.9576 39 1 -2.7488 6.2844 2.2985 40 1 -4.9697 7.3130 2.5482 41 1 -6.3616 6.7842 4.5066 42 1 -5.5456 5.2178 6.2192 43 1 -3.3325 4.1705 5.9798 44 1 -2.6629 3.1161 1.7260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148872137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:26 Heat of formation + Delta-G solvation = -52.943281 kcal Electronic energy + Delta-G solvation = -26833.806417 eV Core-core repulsion = 23100.987721 eV Total energy + Delta-G solvation = -3732.818696 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56061 -40.27662 -39.12448 -37.65149 -36.79482 -34.41700 -33.77391 -32.75845 -31.80909 -31.12297 -29.68285 -28.85446 -25.49493 -24.77215 -24.11758 -23.25349 -22.30417 -21.86067 -20.99818 -19.61148 -18.90137 -18.01482 -17.38893 -17.37321 -16.72744 -16.54949 -16.30549 -16.11392 -15.84073 -15.56073 -15.29460 -14.86572 -14.59291 -14.39646 -14.25237 -13.90736 -13.65757 -13.48568 -13.28241 -13.20189 -13.08925 -12.90738 -12.81275 -12.63788 -12.24299 -12.17688 -12.09317 -11.93407 -11.64528 -11.52405 -11.08481 -10.60412 -10.52095 -10.34326 -9.84104 -9.80988 -9.56227 -9.20848 -8.19488 -6.34020 -0.23194 -0.02407 0.52811 0.66954 1.44000 1.44290 1.55177 2.01439 2.34497 2.59312 2.76083 2.92453 3.12212 3.27635 3.55196 3.84393 4.00259 4.11780 4.14989 4.25295 4.31168 4.38683 4.45404 4.52492 4.57857 4.64641 4.72339 4.76860 4.78630 5.02117 5.04738 5.16116 5.20584 5.27546 5.29797 5.38260 5.41326 5.52600 5.56395 5.60278 5.63744 5.69396 5.74439 5.79832 5.92870 6.07366 6.11042 6.74656 6.76658 6.98689 7.32554 7.57373 8.89059 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023979 B = 0.002778 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.399001 B =10075.772888 C =10581.771713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.262 1.262 13 N -0.701 5.701 14 C 0.538 3.462 15 O -0.569 6.569 16 C -0.180 4.180 17 C -0.073 4.073 18 C -0.124 4.124 19 C -0.063 4.063 20 C -0.093 4.093 21 C -0.058 4.058 22 C -0.108 4.108 23 C -0.131 4.131 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.109 4.109 27 C 0.157 3.843 28 O -0.487 6.487 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.024 0.976 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.400 0.600 36 H 0.144 0.856 37 H 0.171 0.829 38 H 0.162 0.838 39 H 0.104 0.896 40 H 0.133 0.867 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.141 0.859 44 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.559 8.357 21.356 26.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.151 4.151 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.186 1.186 13 N -0.351 5.351 14 C 0.326 3.674 15 O -0.450 6.450 16 C -0.183 4.183 17 C -0.092 4.092 18 C -0.141 4.141 19 C -0.081 4.081 20 C -0.094 4.094 21 C -0.058 4.058 22 C -0.127 4.127 23 C -0.149 4.149 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.127 4.127 27 C 0.111 3.889 28 O -0.299 6.299 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.162 0.838 37 H 0.188 0.812 38 H 0.179 0.821 39 H 0.122 0.878 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.168 0.832 43 H 0.159 0.841 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -12.817 8.771 20.317 25.574 hybrid contribution 1.008 -0.654 -0.821 1.455 sum -11.810 8.117 19.497 24.197 Atomic orbital electron populations 1.21662 0.96763 0.99256 1.00311 1.21696 0.94044 0.98911 1.00496 1.18375 0.93836 0.89096 0.81182 0.98260 1.21562 0.91294 1.43439 1.02413 0.90951 1.25796 1.03328 0.94670 0.94657 1.70129 1.37465 1.44092 1.03879 0.85380 0.79069 0.78853 0.77322 1.19625 1.21425 1.18597 1.46185 1.15197 1.56107 1.17632 1.18559 0.82331 0.78732 0.87778 1.90745 1.52019 1.60574 1.41639 1.20519 0.97418 1.05014 0.95387 1.21601 0.98733 0.96893 0.91974 1.21406 0.97220 0.97691 0.97806 1.21643 0.92259 0.96186 0.98033 1.19247 0.95501 1.01858 0.92753 1.18672 0.93026 0.97762 0.96298 1.21292 0.96734 0.96744 0.97895 1.21334 0.94021 1.00490 0.99061 1.21552 1.00482 0.97917 0.93798 1.21426 0.95885 0.96802 0.99989 1.21438 0.94530 0.99981 0.96754 1.18720 0.88626 0.94984 0.86595 1.84683 1.50542 1.48630 1.46015 0.93304 0.93702 0.95645 0.92680 0.93328 0.92627 0.76378 0.83828 0.81203 0.82057 0.87791 0.84885 0.83672 0.83203 0.84120 0.74431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.52 71.98 0.61 -4.96 16 2 C -0.11 -5.55 5.49 30.59 0.17 -5.38 16 3 C 0.28 14.59 2.11 44.24 0.09 14.68 16 4 H 0.00 -0.03 7.55 -2.38 -0.02 -0.05 16 5 C -0.55 -29.40 8.67 25.60 0.22 -29.18 16 6 H 0.07 3.61 7.73 -2.91 -0.02 3.59 16 7 C 0.02 0.86 5.20 84.65 0.44 1.30 16 8 N -0.92 -53.83 12.00 21.45 0.26 -53.57 16 9 Si 0.97 42.40 29.54 68.60 2.03 44.42 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 13 N -0.70 -30.07 4.97 -449.27 -2.23 -32.31 16 14 C 0.54 22.87 6.34 86.69 0.55 23.42 16 15 O -0.57 -28.40 12.29 16.97 0.21 -28.20 16 16 C -0.18 -5.93 5.88 -20.03 -0.12 -6.05 16 17 C -0.07 -1.79 9.53 22.55 0.21 -1.57 16 18 C -0.12 -2.17 10.01 22.20 0.22 -1.94 16 19 C -0.06 -1.14 9.49 22.51 0.21 -0.92 16 20 C -0.09 -2.24 5.48 -19.98 -0.11 -2.35 16 21 C -0.06 -1.27 5.27 -20.05 -0.11 -1.38 16 22 C -0.11 -2.59 8.78 22.49 0.20 -2.39 16 23 C -0.13 -2.50 10.03 22.24 0.22 -2.27 16 24 C -0.12 -1.80 10.04 22.31 0.22 -1.57 16 25 C -0.12 -1.74 10.03 22.24 0.22 -1.51 16 26 C -0.11 -1.83 9.50 22.49 0.21 -1.62 16 27 C 0.16 4.88 6.62 23.08 0.15 5.04 16 28 O -0.49 -16.45 9.91 -67.94 -0.67 -17.12 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.97 5.64 -2.39 -0.01 1.96 16 31 H 0.02 1.25 7.86 -2.39 -0.02 1.23 16 32 H 0.05 3.02 6.65 -2.39 -0.02 3.00 16 33 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.40 14.43 6.55 -92.71 -0.61 13.83 16 36 H 0.14 3.07 6.39 -2.91 -0.02 3.06 16 37 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.16 1.84 8.03 -2.91 -0.02 1.81 16 39 H 0.10 2.90 7.68 -2.91 -0.02 2.87 16 40 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 43 H 0.14 1.76 8.04 -2.92 -0.02 1.74 16 44 H 0.40 11.25 9.06 -74.06 -0.67 10.58 16 Total: -1.00 -73.31 365.07 2.99 -70.33 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: -0.24 Total: 35.12 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 3.64 Total: -18.66 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -1.98 Total: -85.88 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -0.47 Total: -45.32 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -73.31 2.99 -70.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148872137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.382 kcal (2) G-P(sol) polarization free energy of solvation -73.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds