Wall clock time and date at job start Tue Mar 31 2020 16:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47056 * 2 1 4 4 N 1.46902 * 109.46947 * 119.99558 * 2 1 3 5 5 C 1.46900 * 111.00021 * 276.20396 * 4 2 1 6 6 H 1.08992 * 109.47385 * 2.32813 * 5 4 2 7 7 C 1.53005 * 109.46976 * 122.32799 * 5 4 2 8 8 C 1.52997 * 109.47386 * 242.32444 * 5 4 2 9 9 C 1.53004 * 109.47069 * 64.99960 * 8 5 4 10 10 C 1.50701 * 109.47079 * 180.02562 * 9 8 5 11 11 H 1.08001 * 120.00250 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99720 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00053 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99654 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47512 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47196 * 120.00199 * 14 12 10 17 17 H 1.48504 * 109.47094 * 239.99945 * 14 12 10 18 18 C 1.50702 * 109.47375 * 239.99866 * 2 1 3 19 19 C 1.38231 * 119.99742 * 99.99939 * 18 2 1 20 20 C 1.38240 * 119.99680 * 179.97438 * 19 18 2 21 21 C 1.38238 * 119.99901 * 0.02562 * 20 19 18 22 22 S 1.76192 * 119.99851 * 179.97438 * 21 20 19 23 23 C 1.81396 * 104.45056 * 90.00427 * 22 21 20 24 24 O 1.42102 * 104.27866 * 206.07317 * 22 21 20 25 25 O 1.42105 * 104.27971 * 333.93097 * 22 21 20 26 26 C 1.38237 * 119.99915 * 0.25691 * 21 20 19 27 27 C 1.38229 * 119.99799 * 279.97552 * 18 2 1 28 28 H 1.08998 * 109.47421 * 58.28855 * 1 2 3 29 29 H 1.09003 * 109.47123 * 178.28697 * 1 2 3 30 30 H 1.09000 * 109.47957 * 298.28445 * 1 2 3 31 31 H 1.00905 * 110.99570 * 152.25022 * 4 2 1 32 32 H 1.09005 * 109.46592 * 303.53352 * 7 5 4 33 33 H 1.08999 * 109.47140 * 63.53248 * 7 5 4 34 34 H 1.09002 * 109.46667 * 183.53704 * 7 5 4 35 35 H 1.08993 * 109.47417 * 185.00361 * 8 5 4 36 36 H 1.09003 * 109.47452 * 305.00600 * 8 5 4 37 37 H 1.08999 * 109.47052 * 300.00117 * 9 8 5 38 38 H 1.09003 * 109.46986 * 60.00052 * 9 8 5 39 39 H 0.97001 * 119.99767 * 179.97438 * 13 12 10 40 40 H 1.08002 * 120.00467 * 359.97438 * 19 18 2 41 41 H 1.07997 * 120.00154 * 180.02562 * 20 19 18 42 42 H 1.08996 * 109.47756 * 180.02562 * 23 22 21 43 43 H 1.09007 * 109.47039 * 299.99801 * 23 22 21 44 44 H 1.08994 * 109.47566 * 59.99614 * 23 22 21 45 45 H 1.07997 * 120.00033 * 179.72642 * 26 21 20 46 46 H 1.08003 * 120.00184 * 0.02562 * 27 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0553 0.2155 2.3538 6 1 1.6680 1.1913 2.0607 7 6 1.1934 -0.3578 3.4805 8 6 3.4980 0.3647 2.8409 9 6 4.3330 1.0525 1.7589 10 6 5.7542 1.1989 2.2384 11 1 6.0340 0.8372 3.2169 12 6 6.6973 1.7947 1.4280 13 7 6.3567 2.2347 0.2364 14 14 8.4590 1.9755 2.0221 15 1 8.5826 1.4026 3.3866 16 1 9.3697 1.2529 1.0981 17 1 8.8255 3.4143 2.0537 18 6 2.0323 -0.7104 -1.2304 19 6 2.4587 0.0194 -2.3242 20 6 2.9201 -0.6323 -3.4527 21 6 2.9545 -2.0138 -3.4875 22 16 3.5419 -2.8444 -4.9260 23 6 5.3237 -3.0337 -4.6436 24 8 2.8942 -4.1087 -4.8897 25 8 3.2993 -1.9272 -5.9840 26 6 2.5226 -2.7437 -2.3958 27 6 2.0672 -2.0918 -1.2650 28 1 -0.3634 0.5402 -0.8742 29 1 -0.3633 -1.0272 -0.0307 30 1 -0.3635 0.4869 0.9049 31 1 2.9261 -1.1038 1.0348 32 1 0.1799 -0.5228 3.1145 33 1 1.6171 -1.3042 3.8164 34 1 1.1691 0.3454 4.3130 35 1 3.5143 0.9663 3.7496 36 1 3.9147 -0.6206 3.0498 37 1 4.3167 0.4509 0.8501 38 1 3.9163 2.0378 1.5499 39 1 7.0201 2.6541 -0.3336 40 1 2.4314 1.0987 -2.2972 41 1 3.2536 -0.0621 -4.3071 42 1 5.7744 -3.5438 -5.4949 43 1 5.7795 -2.0504 -4.5269 44 1 5.4881 -3.6200 -3.7396 45 1 2.5453 -3.8230 -2.4247 46 1 1.7340 -2.6621 -0.4105 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476143.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:02 Heat of formation + Delta-G solvation = -83.734990 kcal Electronic energy + Delta-G solvation = -25808.658363 eV Core-core repulsion = 22209.948389 eV Total energy + Delta-G solvation = -3598.709974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.72248 -38.67234 -38.12964 -36.98028 -35.69165 -34.49011 -32.06511 -31.69090 -30.69040 -30.18719 -29.38804 -26.92700 -24.93521 -23.91391 -23.23840 -21.59624 -21.25550 -20.00491 -18.81189 -18.50811 -17.33198 -17.14199 -17.02722 -16.54590 -16.42339 -15.93647 -15.60011 -15.33527 -14.76136 -14.56921 -14.51334 -14.34706 -14.13355 -14.05844 -13.96242 -13.63739 -13.50471 -13.14436 -13.12962 -13.04267 -13.02248 -13.00338 -12.88693 -12.51199 -12.34172 -12.25196 -12.11419 -11.97003 -11.82702 -11.60991 -11.47580 -11.26146 -11.04895 -10.57731 -10.12249 -9.99273 -9.37490 -8.21885 -6.32358 -0.84811 -0.16678 0.34803 1.36144 1.37967 1.49893 1.92224 2.38168 2.44121 3.02732 3.11201 3.18773 3.20373 3.61438 3.81517 3.96808 4.04819 4.10021 4.15756 4.29699 4.34271 4.42069 4.45223 4.52091 4.55503 4.74588 4.77239 4.81020 4.91334 4.96566 4.98337 5.02708 5.08052 5.10591 5.12503 5.16904 5.22733 5.32473 5.47153 5.49258 5.54671 5.67059 5.82472 5.88265 6.18283 6.23635 6.41522 6.83802 7.36938 8.88888 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009565 B = 0.004050 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.597823 B = 6912.649795 C = 9061.404780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.117 3.883 3 H 0.034 0.966 4 N -0.665 5.665 5 C 0.086 3.914 6 H 0.049 0.951 7 C -0.124 4.124 8 C -0.119 4.119 9 C 0.033 3.967 10 C -0.543 4.543 11 H 0.056 0.944 12 C 0.006 3.994 13 N -0.927 5.927 14 Si 0.957 3.043 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.280 1.280 18 C -0.038 4.038 19 C -0.147 4.147 20 C -0.035 4.035 21 C -0.669 4.669 22 S 2.519 3.481 23 C -0.632 4.632 24 O -0.969 6.969 25 O -0.976 6.976 26 C -0.033 4.033 27 C -0.127 4.127 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.340 0.660 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.056 0.944 37 H -0.003 1.003 38 H -0.020 1.020 39 H 0.262 0.738 40 H 0.126 0.874 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.142 0.858 44 H 0.151 0.849 45 H 0.161 0.839 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.276 -10.389 -5.851 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.007 3.993 3 H 0.052 0.948 4 N -0.296 5.296 5 C -0.024 4.024 6 H 0.067 0.933 7 C -0.182 4.182 8 C -0.157 4.157 9 C -0.004 4.004 10 C -0.581 4.581 11 H 0.074 0.926 12 C -0.192 4.192 13 N -0.567 5.567 14 Si 0.782 3.218 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.206 1.206 18 C -0.038 4.038 19 C -0.167 4.167 20 C -0.054 4.054 21 C -0.755 4.755 22 S 2.701 3.299 23 C -0.786 4.786 24 O -0.967 6.967 25 O -0.974 6.974 26 C -0.051 4.051 27 C -0.146 4.146 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.159 0.841 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.015 0.985 38 H -0.001 1.001 39 H 0.071 0.929 40 H 0.144 0.856 41 H 0.166 0.834 42 H 0.175 0.825 43 H 0.161 0.839 44 H 0.169 0.831 45 H 0.179 0.821 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.366 -10.813 -6.510 15.143 hybrid contribution 2.175 1.650 0.600 2.795 sum -6.192 -9.163 -5.910 12.539 Atomic orbital electron populations 1.21722 0.91728 1.02897 1.01882 1.20641 0.97072 0.94577 0.86982 0.94832 1.60955 1.32479 1.33036 1.03152 1.21669 0.94695 0.94256 0.91783 0.93277 1.21693 0.99325 1.00772 0.96368 1.22017 0.94656 1.00121 0.98930 1.18944 0.93823 0.93646 0.94032 1.21705 0.95879 1.38548 1.01974 0.92620 1.25863 1.03242 0.95093 0.95013 1.70088 1.35629 1.40897 1.10061 0.85519 0.79678 0.77832 0.78757 1.18834 1.20285 1.20627 1.20413 0.93773 0.94887 0.94738 1.21349 1.00666 1.00653 0.94012 1.21049 0.93562 0.92966 0.97774 1.30666 1.19239 1.04967 1.20610 1.04510 0.79119 0.73092 0.73159 1.30082 1.20268 1.13798 1.14405 1.93527 1.74219 1.42409 1.86498 1.93527 1.85580 1.64731 1.53521 1.21228 0.92091 1.01044 0.90775 1.21349 1.00451 0.93589 0.99181 0.92162 0.91248 0.91710 0.84137 0.91767 0.92515 0.92354 0.92723 0.92562 0.98510 1.00137 0.92908 0.85649 0.83354 0.82461 0.83911 0.83098 0.82115 0.83097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.00 9.39 71.98 0.68 -2.32 16 2 C 0.12 3.48 2.64 44.17 0.12 3.59 16 3 H 0.03 1.19 7.43 -2.39 -0.02 1.17 16 4 N -0.66 -19.95 5.34 -473.32 -2.53 -22.48 16 5 C 0.09 2.70 2.51 44.92 0.11 2.81 16 6 H 0.05 1.65 7.27 -2.39 -0.02 1.63 16 7 C -0.12 -3.10 9.52 71.98 0.69 -2.41 16 8 C -0.12 -4.61 4.44 30.59 0.14 -4.47 16 9 C 0.03 1.63 4.83 29.85 0.14 1.78 16 10 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 11 H 0.06 3.00 7.74 -2.91 -0.02 2.97 16 12 C 0.01 0.34 5.46 84.66 0.46 0.81 16 13 N -0.93 -54.37 13.29 21.45 0.28 -54.09 16 14 Si 0.96 43.19 29.54 68.60 2.03 45.21 16 15 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 C -0.04 -1.11 4.71 -19.87 -0.09 -1.21 16 19 C -0.15 -4.52 9.67 22.27 0.22 -4.30 16 20 C -0.03 -0.96 9.47 22.27 0.21 -0.75 16 21 C -0.67 -16.46 5.66 22.27 0.13 -16.33 16 22 S 2.52 50.61 5.80 -56.49 -0.33 50.28 16 23 C -0.63 -7.41 10.80 113.37 1.22 -6.19 16 24 O -0.97 -24.25 17.12 -127.65 -2.19 -26.43 16 25 O -0.98 -26.13 17.13 -127.65 -2.19 -28.32 16 26 C -0.03 -0.79 9.47 22.27 0.21 -0.58 16 27 C -0.13 -3.32 9.03 22.27 0.20 -3.12 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.49 8.00 -2.39 -0.02 1.47 16 31 H 0.34 11.37 6.52 -89.69 -0.59 10.79 16 32 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 2.14 8.13 -2.39 -0.02 2.12 16 37 H 0.00 -0.18 7.14 -2.39 -0.02 -0.20 16 38 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 39 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.13 3.83 8.04 -2.91 -0.02 3.81 16 41 H 0.15 3.63 7.57 -2.91 -0.02 3.61 16 42 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.16 3.04 7.56 -2.91 -0.02 3.01 16 46 H 0.15 3.50 7.72 -2.91 -0.02 3.47 16 Total: -1.00 -72.79 389.09 0.11 -72.67 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.37 Total: 25.63 kcal Atomic # 6 Polarization: -67.14 SS G_CDS: 4.66 Total: -62.48 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -2.24 Total: -76.57 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -4.37 Total: -54.75 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 50.61 SS G_CDS: -0.33 Total: 50.28 kcal Total: -72.79 0.11 -72.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476143.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.060 kcal (2) G-P(sol) polarization free energy of solvation -72.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds