Wall clock time and date at job start Tue Mar 31 2020 16:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47535 * 2 1 4 4 C 1.53007 * 109.47039 * 120.00206 * 2 1 3 5 5 C 1.53001 * 109.46947 * 185.00113 * 4 2 1 6 6 C 1.50695 * 109.47031 * 179.97438 * 5 4 2 7 7 H 1.08004 * 120.00168 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99988 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00121 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99948 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47188 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47542 * 120.00027 * 10 8 6 13 13 H 1.48497 * 109.47362 * 239.99817 * 10 8 6 14 14 N 1.46904 * 109.47074 * 239.99993 * 2 1 3 15 15 C 1.46894 * 110.99999 * 85.00051 * 14 2 1 16 16 H 1.08995 * 109.47075 * 325.00080 * 15 14 2 17 17 C 1.53007 * 109.47118 * 84.99808 * 15 14 2 18 18 C 1.50704 * 109.47349 * 204.99764 * 15 14 2 19 19 C 1.38225 * 120.00132 * 139.99801 * 18 15 14 20 20 C 1.38237 * 120.00244 * 179.97438 * 19 18 15 21 21 C 1.38235 * 119.99967 * 359.97438 * 20 19 18 22 22 S 1.76198 * 120.00275 * 180.02562 * 21 20 19 23 23 C 1.81395 * 104.44778 * 90.00186 * 22 21 20 24 24 O 1.42105 * 104.27617 * 333.92884 * 22 21 20 25 25 O 1.42101 * 104.27776 * 206.07334 * 22 21 20 26 26 C 1.38241 * 119.99709 * 0.27710 * 21 20 19 27 27 C 1.38235 * 119.99935 * 359.51083 * 26 21 20 28 28 H 1.09001 * 109.46846 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47236 * 299.99659 * 1 2 3 30 30 H 1.09002 * 109.47046 * 59.99993 * 1 2 3 31 31 H 1.09002 * 109.46563 * 304.99576 * 4 2 1 32 32 H 1.08992 * 109.47318 * 65.00121 * 4 2 1 33 33 H 1.08998 * 109.46867 * 299.99908 * 5 4 2 34 34 H 1.09002 * 109.47158 * 59.99801 * 5 4 2 35 35 H 0.97004 * 119.99991 * 180.02562 * 9 8 6 36 36 H 1.00899 * 111.00034 * 321.04050 * 14 2 1 37 37 H 1.09004 * 109.47112 * 59.99943 * 17 15 14 38 38 H 1.09004 * 109.47009 * 180.02562 * 17 15 14 39 39 H 1.08997 * 109.47395 * 300.00212 * 17 15 14 40 40 H 1.08010 * 120.00091 * 359.97438 * 19 18 15 41 41 H 1.08001 * 120.00096 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.47393 * 299.99698 * 23 22 21 43 43 H 1.08994 * 109.47678 * 60.00314 * 23 22 21 44 44 H 1.09002 * 109.47051 * 180.02562 * 23 22 21 45 45 H 1.08001 * 119.99521 * 179.72432 * 26 21 20 46 46 H 1.08001 * 119.99979 * 180.27079 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0671 -1.3232 2.5444 7 1 3.3685 -1.8031 3.2140 8 6 5.4184 -1.3602 2.8158 9 7 6.2690 -0.7754 2.0008 10 14 6.0409 -2.2395 4.3417 11 1 4.8907 -2.8092 5.0887 12 1 6.9625 -3.3331 3.9417 13 1 6.7644 -1.2749 5.2085 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2225 -2.3469 16 1 1.2576 0.9329 -2.2906 17 6 3.4111 0.9809 -2.3223 18 6 1.9786 -0.5677 -3.6259 19 6 1.2292 -0.0807 -4.6803 20 6 1.1344 -0.8052 -5.8538 21 6 1.7895 -2.0166 -5.9729 22 16 1.6693 -2.9399 -7.4688 23 6 3.0559 -2.3489 -8.4781 24 8 0.4312 -2.5313 -8.0342 25 8 1.8827 -4.2863 -7.0677 26 6 2.5348 -2.5061 -4.9166 27 6 2.6332 -1.7794 -3.7447 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -0.2617 2.1370 32 1 1.7517 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4260 34 1 3.8532 0.4370 1.3574 35 1 7.2197 -0.8018 2.1915 36 1 1.4496 -1.4980 -1.4100 37 1 4.2360 0.2705 -2.3785 38 1 3.4575 1.6602 -3.1735 39 1 3.4863 1.5524 -1.3973 40 1 0.7175 0.8660 -4.5874 41 1 0.5484 -0.4249 -6.6774 42 1 2.9489 -1.2781 -8.6512 43 1 3.9931 -2.5407 -7.9558 44 1 3.0585 -2.8726 -9.4341 45 1 3.0431 -3.4547 -5.0081 46 1 3.2190 -2.1598 -2.9210 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:12 Heat of formation + Delta-G solvation = -58.387611 kcal Electronic energy + Delta-G solvation = -25257.366059 eV Core-core repulsion = 21659.755230 eV Total energy + Delta-G solvation = -3597.610829 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.83783 -37.42543 -37.36014 -36.19750 -34.17582 -32.68070 -31.23716 -30.38738 -29.83730 -29.32467 -27.91172 -25.13316 -24.00512 -23.04874 -21.50618 -20.50379 -19.79281 -19.27749 -18.04419 -16.49873 -16.42688 -16.21841 -16.01988 -15.54614 -14.81434 -14.62450 -14.43300 -14.22964 -13.92903 -13.64591 -13.57261 -13.45154 -13.20751 -12.93851 -12.73987 -12.37864 -12.34498 -12.25363 -12.23349 -11.91896 -11.66907 -11.50600 -11.42581 -11.26657 -11.21302 -11.04756 -10.88555 -10.60043 -10.43758 -10.22747 -9.65270 -9.31544 -9.23400 -9.17661 -8.90400 -8.25922 -7.99661 -5.90727 -3.91387 -0.23229 0.63623 1.16040 2.59228 3.23398 3.34834 3.42450 3.46511 3.68598 3.82574 4.26906 4.39328 4.49165 4.52684 4.57715 4.72351 4.74125 5.18116 5.19184 5.24930 5.31450 5.37645 5.44678 5.45162 5.51842 5.59867 5.63629 5.78931 5.85783 5.91046 5.98371 6.07437 6.16569 6.23909 6.33006 6.38744 6.56513 6.65396 6.70890 6.86174 7.27490 7.42601 7.70713 7.83246 8.05591 8.20402 8.56070 9.17598 9.71429 11.20214 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.002580 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.045746 B =10849.075315 C =11672.713939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.074 0.926 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.517 4.517 7 H 0.051 0.949 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.664 5.664 15 C 0.117 3.883 16 H 0.051 0.949 17 C -0.135 4.135 18 C -0.026 4.026 19 C -0.138 4.138 20 C -0.028 4.028 21 C -0.666 4.666 22 S 2.502 3.498 23 C -0.650 4.650 24 O -0.942 6.942 25 O -0.938 6.938 26 C -0.025 4.025 27 C -0.118 4.118 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.033 0.967 34 H 0.006 0.994 35 H 0.257 0.743 36 H 0.337 0.663 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.129 0.871 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.141 0.859 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.928 1.876 -21.406 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.092 0.908 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.295 5.295 15 C 0.007 3.993 16 H 0.069 0.931 17 C -0.193 4.193 18 C -0.026 4.026 19 C -0.158 4.158 20 C -0.047 4.047 21 C -0.754 4.754 22 S 2.682 3.318 23 C -0.800 4.800 24 O -0.940 6.940 25 O -0.936 6.936 26 C -0.044 4.044 27 C -0.137 4.137 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.024 0.976 35 H 0.067 0.933 36 H 0.156 0.844 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.147 0.853 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.148 0.852 45 H 0.159 0.841 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.690 1.377 -21.453 23.187 hybrid contribution 0.058 0.337 1.009 1.066 sum -8.632 1.714 -20.443 22.257 Atomic orbital electron populations 1.22545 0.98573 1.01631 1.01263 1.21789 0.90887 0.98467 0.91391 0.90813 1.21630 1.00690 0.98396 0.92918 1.18985 0.88177 0.96421 0.97005 1.21388 0.91835 1.33926 1.08433 0.93113 1.24988 0.97156 0.95787 0.96492 1.69982 1.02075 1.44474 1.36912 0.86640 0.78824 0.79533 0.83578 1.19905 1.21126 1.21209 1.60699 1.57821 1.08637 1.02366 1.20600 0.98552 0.93298 0.86866 0.93127 1.21791 0.96233 0.99751 1.01479 1.20470 0.92715 0.94220 0.95209 1.21167 1.00494 1.00657 0.93450 1.20832 0.94152 0.91604 0.98070 1.30395 1.13088 1.11296 1.20588 1.05027 0.76439 0.74945 0.75351 1.30227 1.20576 1.13625 1.15601 1.93576 1.38775 1.83366 1.78237 1.93593 1.86484 1.32121 1.81368 1.21006 0.93280 0.98274 0.91804 1.21395 0.99630 0.94393 0.98296 0.92745 0.92146 0.93816 0.93497 0.93449 0.94900 0.97551 0.93341 0.84375 0.91217 0.93204 0.91484 0.85315 0.84405 0.85040 0.84855 0.85161 0.84091 0.83434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 9.15 37.16 0.34 -2.03 16 2 C 0.08 1.33 2.40 -67.71 -0.16 1.17 16 3 H 0.07 1.21 7.11 -51.93 -0.37 0.84 16 4 C -0.10 -1.97 4.83 -26.73 -0.13 -2.10 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 7 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 N -0.66 -9.90 4.90 -100.95 -0.49 -10.39 16 15 C 0.12 1.48 2.63 -68.86 -0.18 1.30 16 16 H 0.05 0.60 6.97 -51.93 -0.36 0.24 16 17 C -0.13 -1.84 9.38 37.16 0.35 -1.49 16 18 C -0.03 -0.30 4.71 -104.62 -0.49 -0.79 16 19 C -0.14 -1.40 9.67 -39.59 -0.38 -1.78 16 20 C -0.03 -0.26 9.47 -39.58 -0.37 -0.64 16 21 C -0.67 -6.46 5.66 -39.58 -0.22 -6.68 16 22 S 2.50 20.48 5.80 -107.50 -0.62 19.86 16 23 C -0.65 -2.66 10.79 101.05 1.09 -1.57 16 24 O -0.94 -10.46 17.13 -57.54 -0.99 -11.44 16 25 O -0.94 -10.93 17.12 -57.54 -0.98 -11.91 16 26 C -0.02 -0.27 9.47 -39.58 -0.37 -0.64 16 27 C -0.12 -1.42 9.01 -39.58 -0.36 -1.78 16 28 H 0.05 0.70 8.13 -51.93 -0.42 0.27 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.51 7.43 -51.93 -0.39 0.13 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.89 7.75 -51.93 -0.40 0.49 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 36 H 0.34 4.75 7.73 -39.29 -0.30 4.45 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.01 7.43 -51.93 -0.39 0.63 16 40 H 0.13 1.05 8.04 -52.48 -0.42 0.63 16 41 H 0.14 1.03 7.57 -52.49 -0.40 0.64 16 42 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 43 H 0.13 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.13 0.34 8.14 -51.92 -0.42 -0.09 16 45 H 0.14 1.32 7.56 -52.49 -0.40 0.92 16 46 H 0.15 1.91 7.72 -52.49 -0.41 1.50 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -35.57 388.45 -10.56 -46.13 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.60 Total: 1.07 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: -1.45 Total: -29.86 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.24 Total: -36.54 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -1.97 Total: -23.36 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 20.48 SS G_CDS: -0.62 Total: 19.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.57 -10.56 -46.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.255 kcal (2) G-P(sol) polarization free energy of solvation -35.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds