Wall clock time and date at job start Tue Mar 31 2020 16:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47535 * 2 1 4 4 C 1.53007 * 109.47039 * 120.00206 * 2 1 3 5 5 C 1.53001 * 109.46947 * 185.00113 * 4 2 1 6 6 C 1.50695 * 109.47031 * 179.97438 * 5 4 2 7 7 H 1.08004 * 120.00168 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99988 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00121 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99948 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47188 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47542 * 120.00027 * 10 8 6 13 13 H 1.48497 * 109.47362 * 239.99817 * 10 8 6 14 14 N 1.46904 * 109.47074 * 239.99993 * 2 1 3 15 15 C 1.46894 * 110.99999 * 85.00051 * 14 2 1 16 16 H 1.08995 * 109.47075 * 325.00080 * 15 14 2 17 17 C 1.53007 * 109.47118 * 84.99808 * 15 14 2 18 18 C 1.50704 * 109.47349 * 204.99764 * 15 14 2 19 19 C 1.38225 * 120.00132 * 139.99801 * 18 15 14 20 20 C 1.38237 * 120.00244 * 179.97438 * 19 18 15 21 21 C 1.38235 * 119.99967 * 359.97438 * 20 19 18 22 22 S 1.76198 * 120.00275 * 180.02562 * 21 20 19 23 23 C 1.81395 * 104.44778 * 90.00186 * 22 21 20 24 24 O 1.42105 * 104.27617 * 333.92884 * 22 21 20 25 25 O 1.42101 * 104.27776 * 206.07334 * 22 21 20 26 26 C 1.38241 * 119.99709 * 0.27710 * 21 20 19 27 27 C 1.38235 * 119.99935 * 359.51083 * 26 21 20 28 28 H 1.09001 * 109.46846 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47236 * 299.99659 * 1 2 3 30 30 H 1.09002 * 109.47046 * 59.99993 * 1 2 3 31 31 H 1.09002 * 109.46563 * 304.99576 * 4 2 1 32 32 H 1.08992 * 109.47318 * 65.00121 * 4 2 1 33 33 H 1.08998 * 109.46867 * 299.99908 * 5 4 2 34 34 H 1.09002 * 109.47158 * 59.99801 * 5 4 2 35 35 H 0.97004 * 119.99991 * 180.02562 * 9 8 6 36 36 H 1.00899 * 111.00034 * 321.04050 * 14 2 1 37 37 H 1.09004 * 109.47112 * 59.99943 * 17 15 14 38 38 H 1.09004 * 109.47009 * 180.02562 * 17 15 14 39 39 H 1.08997 * 109.47395 * 300.00212 * 17 15 14 40 40 H 1.08010 * 120.00091 * 359.97438 * 19 18 15 41 41 H 1.08001 * 120.00096 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.47393 * 299.99698 * 23 22 21 43 43 H 1.08994 * 109.47678 * 60.00314 * 23 22 21 44 44 H 1.09002 * 109.47051 * 180.02562 * 23 22 21 45 45 H 1.08001 * 119.99521 * 179.72432 * 26 21 20 46 46 H 1.08001 * 119.99979 * 180.27079 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0671 -1.3232 2.5444 7 1 3.3685 -1.8031 3.2140 8 6 5.4184 -1.3602 2.8158 9 7 6.2690 -0.7754 2.0008 10 14 6.0409 -2.2395 4.3417 11 1 4.8907 -2.8092 5.0887 12 1 6.9625 -3.3331 3.9417 13 1 6.7644 -1.2749 5.2085 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2225 -2.3469 16 1 1.2576 0.9329 -2.2906 17 6 3.4111 0.9809 -2.3223 18 6 1.9786 -0.5677 -3.6259 19 6 1.2292 -0.0807 -4.6803 20 6 1.1344 -0.8052 -5.8538 21 6 1.7895 -2.0166 -5.9729 22 16 1.6693 -2.9399 -7.4688 23 6 3.0559 -2.3489 -8.4781 24 8 0.4312 -2.5313 -8.0342 25 8 1.8827 -4.2863 -7.0677 26 6 2.5348 -2.5061 -4.9166 27 6 2.6332 -1.7794 -3.7447 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -0.2617 2.1370 32 1 1.7517 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4260 34 1 3.8532 0.4370 1.3574 35 1 7.2197 -0.8018 2.1915 36 1 1.4496 -1.4980 -1.4100 37 1 4.2360 0.2705 -2.3785 38 1 3.4575 1.6602 -3.1735 39 1 3.4863 1.5524 -1.3973 40 1 0.7175 0.8660 -4.5874 41 1 0.5484 -0.4249 -6.6774 42 1 2.9489 -1.2781 -8.6512 43 1 3.9931 -2.5407 -7.9558 44 1 3.0585 -2.8726 -9.4341 45 1 3.0431 -3.4547 -5.0081 46 1 3.2190 -2.1598 -2.9210 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:09 Heat of formation + Delta-G solvation = -82.621910 kcal Electronic energy + Delta-G solvation = -25258.416937 eV Core-core repulsion = 21659.755230 eV Total energy + Delta-G solvation = -3598.661707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -40.72371 -38.60242 -38.11554 -36.95798 -35.71298 -34.44609 -32.06900 -31.77044 -30.71908 -30.16404 -29.08876 -27.00380 -24.99479 -23.88445 -23.19024 -21.62172 -21.20954 -19.98486 -18.78732 -18.35785 -17.33966 -17.15260 -17.01477 -16.48287 -16.45839 -15.81138 -15.57444 -15.24704 -14.79723 -14.56250 -14.43060 -14.37842 -14.07912 -13.92070 -13.89064 -13.83759 -13.61443 -13.16812 -13.12408 -13.02621 -12.98600 -12.93055 -12.85430 -12.52298 -12.35302 -12.23344 -12.13916 -11.95015 -11.76850 -11.52900 -11.41502 -11.20557 -10.95184 -10.47595 -10.13660 -9.99758 -9.18757 -8.13203 -6.22671 -0.83060 -0.18125 0.34354 1.39297 1.39819 1.52511 1.94830 2.43597 2.44149 3.06235 3.18553 3.19897 3.22005 3.60342 3.83069 3.98705 4.05740 4.13234 4.16341 4.26011 4.31884 4.40451 4.42862 4.49725 4.56421 4.75107 4.75577 4.77972 4.91474 4.97288 4.98738 5.03235 5.04666 5.11493 5.12808 5.18830 5.29107 5.37031 5.47398 5.52219 5.60708 5.87631 5.91749 6.05188 6.26897 6.36572 6.56806 6.97222 7.45083 8.97827 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.002580 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.045746 B =10849.075315 C =11672.713939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.092 3.908 3 H 0.065 0.935 4 C -0.089 4.089 5 C 0.043 3.957 6 C -0.541 4.541 7 H 0.052 0.948 8 C 0.000 4.000 9 N -0.930 5.930 10 Si 0.957 3.043 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.279 1.279 14 N -0.683 5.683 15 C 0.123 3.877 16 H 0.069 0.931 17 C -0.130 4.130 18 C -0.036 4.036 19 C -0.136 4.136 20 C -0.030 4.030 21 C -0.665 4.665 22 S 2.510 3.490 23 C -0.626 4.626 24 O -0.974 6.974 25 O -0.981 6.981 26 C -0.035 4.035 27 C -0.134 4.134 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.007 0.993 34 H -0.023 1.023 35 H 0.260 0.740 36 H 0.342 0.658 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.153 0.847 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.793 2.319 -22.853 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 H 0.084 0.916 4 C -0.127 4.127 5 C 0.006 3.994 6 C -0.580 4.580 7 H 0.070 0.930 8 C -0.197 4.197 9 N -0.570 5.570 10 Si 0.783 3.217 11 H -0.189 1.189 12 H -0.205 1.205 13 H -0.205 1.205 14 N -0.315 5.315 15 C 0.014 3.986 16 H 0.086 0.914 17 C -0.188 4.188 18 C -0.037 4.037 19 C -0.155 4.155 20 C -0.049 4.049 21 C -0.751 4.751 22 S 2.694 3.306 23 C -0.780 4.780 24 O -0.971 6.971 25 O -0.978 6.978 26 C -0.054 4.054 27 C -0.153 4.153 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.025 0.975 34 H -0.004 1.004 35 H 0.069 0.931 36 H 0.161 0.839 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.171 0.829 41 H 0.179 0.821 42 H 0.174 0.826 43 H 0.167 0.833 44 H 0.172 0.828 45 H 0.164 0.836 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.602 1.811 -22.863 24.863 hybrid contribution 0.407 0.214 1.354 1.430 sum -9.195 2.025 -21.508 23.479 Atomic orbital electron populations 1.22403 0.95646 1.02291 1.02537 1.21540 0.93041 0.97186 0.89965 0.91629 1.21458 0.96799 0.98925 0.95507 1.18784 0.91891 0.93810 0.94943 1.21841 0.92412 1.34266 1.09447 0.92990 1.25898 0.97450 0.96534 0.99837 1.70116 1.02465 1.45623 1.38828 0.85518 0.78359 0.78359 0.79497 1.18918 1.20498 1.20452 1.60553 1.58384 1.09459 1.03072 1.20530 0.98255 0.93185 0.86617 0.91362 1.21745 0.96219 0.99457 1.01420 1.20357 0.93892 0.94138 0.95281 1.21419 0.99737 1.01487 0.92843 1.21183 0.93805 0.91315 0.98562 1.30643 1.12122 1.11347 1.20988 1.04720 0.77157 0.73838 0.74919 1.30039 1.17609 1.15183 1.15125 1.93531 1.41846 1.83494 1.78273 1.93540 1.87351 1.34699 1.82211 1.21101 0.93956 0.98573 0.91789 1.21301 1.00330 0.95282 0.98400 0.92385 0.91595 0.91782 0.93357 0.93714 0.97490 1.00428 0.93100 0.83909 0.93802 0.90602 0.93672 0.82947 0.82067 0.82647 0.83307 0.82796 0.83550 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 9.15 71.98 0.66 -3.49 16 2 C 0.09 2.94 2.40 44.92 0.11 3.05 16 3 H 0.07 2.20 7.11 -2.39 -0.02 2.18 16 4 C -0.09 -3.64 4.83 30.60 0.15 -3.50 16 5 C 0.04 2.28 4.86 29.85 0.15 2.43 16 6 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 7 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 8 C 0.00 0.01 5.46 84.65 0.46 0.47 16 9 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 10 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 N -0.68 -20.87 4.90 -473.29 -2.32 -23.19 16 15 C 0.12 3.11 2.63 44.17 0.12 3.23 16 16 H 0.07 1.49 6.97 -2.39 -0.02 1.48 16 17 C -0.13 -3.67 9.38 71.98 0.67 -3.00 16 18 C -0.04 -0.82 4.71 -19.87 -0.09 -0.92 16 19 C -0.14 -2.46 9.67 22.27 0.22 -2.24 16 20 C -0.03 -0.51 9.47 22.27 0.21 -0.29 16 21 C -0.67 -12.09 5.66 22.27 0.13 -11.96 16 22 S 2.51 37.54 5.80 -56.49 -0.33 37.21 16 23 C -0.63 -2.81 10.79 113.37 1.22 -1.59 16 24 O -0.97 -20.28 17.13 -127.65 -2.19 -22.47 16 25 O -0.98 -22.63 17.12 -127.65 -2.19 -24.82 16 26 C -0.04 -0.77 9.47 22.27 0.21 -0.55 16 27 C -0.13 -3.33 9.01 22.27 0.20 -3.13 16 28 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.32 7.43 -2.39 -0.02 1.31 16 31 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.01 0.39 7.75 -2.39 -0.02 0.37 16 34 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 35 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.34 9.81 7.73 -89.69 -0.69 9.11 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.04 1.44 7.43 -2.39 -0.02 1.42 16 40 H 0.15 1.98 8.04 -2.91 -0.02 1.96 16 41 H 0.16 1.93 7.57 -2.91 -0.02 1.90 16 42 H 0.16 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.15 2.85 7.56 -2.91 -0.02 2.83 16 46 H 0.13 3.60 7.72 -2.91 -0.02 3.57 16 Total: -1.00 -79.46 388.45 0.20 -79.26 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.26 Total: 16.64 kcal Atomic # 6 Polarization: -57.48 SS G_CDS: 4.64 Total: -52.84 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -2.03 Total: -80.35 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -4.37 Total: -47.29 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 37.54 SS G_CDS: -0.33 Total: 37.21 kcal Total: -79.46 0.20 -79.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.362 kcal (2) G-P(sol) polarization free energy of solvation -79.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds