Wall clock time and date at job start Tue Mar 31 2020 16:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.46991 * 184.99870 * 4 2 1 6 6 C 1.50696 * 109.46948 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00136 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00375 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00593 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 119.99657 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47246 * 89.99729 * 10 8 6 12 12 H 1.48494 * 109.47014 * 209.99758 * 10 8 6 13 13 H 1.48503 * 109.46972 * 329.99586 * 10 8 6 14 14 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 15 15 C 1.46911 * 110.99614 * 85.00357 * 14 2 1 16 16 C 1.52993 * 109.46779 * 179.97438 * 15 14 2 17 17 C 1.50701 * 109.47197 * 179.97438 * 16 15 14 18 18 C 1.38238 * 120.00123 * 269.73010 * 17 16 15 19 19 C 1.38237 * 119.99566 * 179.75978 * 18 17 16 20 20 C 1.38228 * 120.00250 * 0.48943 * 19 18 17 21 21 S 1.76203 * 119.99884 * 179.76815 * 20 19 18 22 22 C 1.81406 * 104.44649 * 270.01793 * 21 20 19 23 23 O 1.42096 * 104.27804 * 26.08814 * 21 20 19 24 24 O 1.42104 * 104.27845 * 153.94722 * 21 20 19 25 25 C 1.38238 * 120.00080 * 359.78606 * 20 19 18 26 26 C 1.38234 * 119.99770 * 89.99823 * 17 16 15 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 31 31 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 32 32 H 1.08996 * 109.46933 * 299.99587 * 5 4 2 33 33 H 1.09006 * 109.47013 * 60.00029 * 5 4 2 34 34 H 0.96998 * 120.00105 * 180.02562 * 9 8 6 35 35 H 1.00897 * 111.00496 * 208.95166 * 14 2 1 36 36 H 1.09000 * 109.46786 * 299.99838 * 15 14 2 37 37 H 1.09000 * 109.46923 * 59.99884 * 15 14 2 38 38 H 1.08994 * 109.47466 * 299.99980 * 16 15 14 39 39 H 1.09000 * 109.47454 * 60.00250 * 16 15 14 40 40 H 1.07995 * 120.00080 * 359.97438 * 18 17 16 41 41 H 1.08005 * 119.99617 * 180.25384 * 19 18 17 42 42 H 1.08999 * 109.47117 * 60.00351 * 22 21 20 43 43 H 1.09004 * 109.46849 * 180.02562 * 22 21 20 44 44 H 1.08998 * 109.46847 * 299.99832 * 22 21 20 45 45 H 1.07997 * 119.99986 * 179.97438 * 25 20 19 46 46 H 1.07994 * 120.00210 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 6 4.0671 -1.3232 2.5444 7 1 3.3687 -1.8037 3.2135 8 6 5.4184 -1.3603 2.8158 9 7 5.8567 -1.9794 3.8901 10 14 6.6266 -0.5298 1.6581 11 1 6.8322 0.8780 2.0837 12 1 7.9234 -1.2523 1.6945 13 1 6.0846 -0.5549 0.2758 14 7 2.0196 -0.6926 -1.1994 15 6 2.0825 0.2226 -2.3469 16 6 2.5962 -0.5330 -3.5741 17 6 2.6601 0.4056 -4.7514 18 6 1.5672 0.5419 -5.5868 19 6 1.6242 1.4066 -6.6639 20 6 2.7775 2.1272 -6.9114 21 16 2.8521 3.2247 -8.2879 22 6 3.4706 2.1998 -9.6509 23 8 1.4989 3.5937 -8.5157 24 8 3.8221 4.1928 -7.9120 25 6 3.8724 1.9866 -6.0794 26 6 3.8136 1.1259 -4.9992 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6055 -0.2618 2.1370 31 1 1.7516 -1.7716 1.2057 32 1 3.9994 -1.0729 0.4260 33 1 3.8532 0.4370 1.3573 34 1 6.8074 -2.0051 4.0812 35 1 2.9173 -1.1206 -1.0288 36 1 1.0871 0.6162 -2.5525 37 1 2.7589 1.0461 -2.1182 38 1 3.5916 -0.9264 -3.3682 39 1 1.9202 -1.3568 -3.8030 40 1 0.6677 -0.0244 -5.3960 41 1 0.7688 1.5162 -7.3142 42 1 2.7814 1.3738 -9.8261 43 1 3.5496 2.8053 -10.5539 44 1 4.4529 1.8048 -9.3917 45 1 4.7736 2.5493 -6.2730 46 1 4.6691 1.0159 -4.3494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:21 Heat of formation + Delta-G solvation = -62.326611 kcal Electronic energy + Delta-G solvation = -24550.404877 eV Core-core repulsion = 20952.623240 eV Total energy + Delta-G solvation = -3597.781637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.80870 -37.51929 -37.48841 -36.32680 -34.49972 -32.94079 -31.39820 -31.33060 -30.04145 -29.70152 -27.65671 -25.37441 -23.37781 -23.23090 -21.38867 -21.11904 -19.65277 -19.43913 -18.18355 -16.87913 -16.61128 -16.52490 -15.99207 -15.70521 -15.19379 -15.10134 -14.76131 -14.28977 -14.08630 -13.86209 -13.74775 -13.69692 -13.39051 -13.19401 -12.85977 -12.57344 -12.47034 -12.36711 -12.33805 -12.23491 -11.76846 -11.72841 -11.59897 -11.49191 -11.33434 -11.13498 -11.03768 -10.86077 -10.55252 -10.00212 -9.82573 -9.50061 -9.41813 -9.38306 -9.21742 -8.58680 -8.20706 -6.08278 -4.06285 -0.36615 0.46997 0.96702 2.45854 3.05387 3.25299 3.32780 3.33835 3.54415 3.69081 4.17891 4.27156 4.30559 4.39831 4.50219 4.55228 4.74908 4.92904 4.98649 5.09796 5.11975 5.17318 5.24943 5.31776 5.36380 5.54139 5.58152 5.61913 5.72070 5.75411 5.78879 5.86097 5.92730 6.08530 6.19724 6.23904 6.35129 6.38461 6.50566 6.68369 6.80273 7.20450 7.23405 7.44294 7.66700 7.75418 8.50354 8.97312 9.53968 11.05273 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.002313 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.116465 B =12102.527380 C =13212.043203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.080 3.920 3 H 0.038 0.962 4 C -0.107 4.107 5 C -0.014 4.014 6 C -0.519 4.519 7 H 0.072 0.928 8 C 0.066 3.934 9 N -0.902 5.902 10 Si 0.881 3.119 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.268 1.268 14 N -0.688 5.688 15 C 0.065 3.935 16 C -0.092 4.092 17 C -0.017 4.017 18 C -0.137 4.137 19 C -0.023 4.023 20 C -0.669 4.669 21 S 2.502 3.498 22 C -0.650 4.650 23 O -0.939 6.939 24 O -0.939 6.939 25 C -0.022 4.022 26 C -0.138 4.138 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.013 0.987 33 H 0.007 0.993 34 H 0.263 0.737 35 H 0.350 0.650 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.141 0.859 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 6.525 -28.569 30.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 H 0.056 0.944 4 C -0.144 4.144 5 C -0.052 4.052 6 C -0.557 4.557 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.541 5.541 10 Si 0.709 3.291 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.193 1.193 14 N -0.322 5.322 15 C -0.065 4.065 16 C -0.129 4.129 17 C -0.018 4.018 18 C -0.156 4.156 19 C -0.042 4.042 20 C -0.756 4.756 21 S 2.682 3.318 22 C -0.800 4.800 23 O -0.937 6.937 24 O -0.936 6.936 25 C -0.041 4.041 26 C -0.157 4.157 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.031 0.969 33 H 0.026 0.974 34 H 0.073 0.927 35 H 0.171 0.829 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.158 0.842 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.635 7.089 -28.625 30.462 hybrid contribution 1.799 0.054 -0.078 1.801 sum -5.836 7.143 -28.703 30.149 Atomic orbital electron populations 1.21780 0.95365 1.01913 1.00359 1.21652 0.94946 0.96008 0.90328 0.94410 1.21671 0.98034 1.00140 0.94598 1.19608 0.91990 0.96176 0.97419 1.21120 0.92917 1.34324 1.07322 0.90972 1.25052 0.98437 0.94993 0.95076 1.69912 1.14629 1.43447 1.26156 0.86766 0.80662 0.79744 0.81944 1.20400 1.21351 1.19284 1.60599 1.34464 1.32614 1.04544 1.21896 1.00447 0.93961 0.90148 1.20785 1.03362 0.97087 0.91691 1.20314 0.93060 0.93938 0.94449 1.21241 0.98873 0.99971 0.95476 1.20920 0.95453 0.91422 0.96406 1.30424 1.01973 1.21254 1.21936 1.05068 0.75008 0.75592 0.76159 1.30229 1.13772 1.16861 1.19142 1.93584 1.33684 1.80855 1.85548 1.93592 1.62667 1.55774 1.81571 1.20933 0.96582 0.93987 0.92572 1.21287 0.98643 0.97440 0.98308 0.93760 0.92805 0.92180 0.92028 0.91775 0.96914 0.97447 0.92724 0.82917 0.91075 0.95230 0.90267 0.89366 0.84812 0.84177 0.84977 0.85064 0.84968 0.84160 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.41 37.16 0.35 -1.51 16 2 C 0.08 1.27 2.65 -67.71 -0.18 1.10 16 3 H 0.04 0.62 7.80 -51.93 -0.40 0.22 16 4 C -0.11 -2.06 4.74 -26.73 -0.13 -2.18 16 5 C -0.01 -0.33 3.87 -27.88 -0.11 -0.44 16 6 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 7 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 8 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 9 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 10 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 14 N -0.69 -10.21 6.31 -106.72 -0.67 -10.88 16 15 C 0.07 0.81 5.47 -3.82 -0.02 0.79 16 16 C -0.09 -0.94 5.61 -27.89 -0.16 -1.10 16 17 C -0.02 -0.17 5.13 -104.62 -0.54 -0.70 16 18 C -0.14 -1.21 9.70 -39.58 -0.38 -1.59 16 19 C -0.02 -0.19 9.47 -39.59 -0.37 -0.57 16 20 C -0.67 -5.61 5.66 -39.58 -0.22 -5.83 16 21 S 2.50 17.72 5.80 -107.50 -0.62 17.09 16 22 C -0.65 -1.84 10.80 101.05 1.09 -0.75 16 23 O -0.94 -9.59 17.13 -57.54 -0.99 -10.58 16 24 O -0.94 -9.89 17.13 -57.54 -0.99 -10.87 16 25 C -0.02 -0.20 9.47 -39.58 -0.37 -0.57 16 26 C -0.14 -1.33 9.70 -39.58 -0.38 -1.72 16 27 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.01 0.29 5.48 -51.93 -0.28 0.00 16 33 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.35 5.64 6.47 -39.29 -0.25 5.38 16 36 H 0.07 0.85 7.44 -51.93 -0.39 0.47 16 37 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 38 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 39 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.14 0.90 7.57 -52.48 -0.40 0.51 16 42 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 43 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 44 H 0.13 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.14 1.03 7.57 -52.49 -0.40 0.63 16 46 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -35.85 386.34 -10.75 -46.61 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.55 Total: 1.19 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -1.86 Total: -28.24 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.10 Total: -37.81 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -1.97 Total: -21.45 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: 17.72 SS G_CDS: -0.62 Total: 17.09 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.85 -10.75 -46.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.718 kcal (2) G-P(sol) polarization free energy of solvation -35.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds