Wall clock time and date at job start Tue Mar 31 2020 16:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99594 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99875 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47061 * 90.00257 * 10 8 6 12 12 H 1.48497 * 109.46906 * 209.99430 * 10 8 6 13 13 H 1.48498 * 109.47403 * 329.99876 * 10 8 6 14 14 N 1.46910 * 109.46729 * 240.00732 * 2 1 3 15 15 C 1.46900 * 111.00108 * 85.00300 * 14 2 1 16 16 C 1.53000 * 109.47136 * 180.02562 * 15 14 2 17 17 C 1.50699 * 109.47119 * 179.97438 * 16 15 14 18 18 C 1.38259 * 120.00226 * 269.72586 * 17 16 15 19 19 C 1.38207 * 120.00220 * 179.79044 * 18 17 16 20 20 C 1.38252 * 119.99840 * 0.43513 * 19 18 17 21 21 C 1.38223 * 120.00484 * 359.81656 * 20 19 18 22 22 S 1.76197 * 120.00249 * 179.97438 * 21 20 19 23 23 C 1.81400 * 104.44673 * 269.97481 * 22 21 20 24 24 O 1.42096 * 104.28146 * 26.04826 * 22 21 20 25 25 O 1.42101 * 104.27414 * 153.90796 * 22 21 20 26 26 C 1.38215 * 119.99858 * 89.99743 * 17 16 15 27 27 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 30 30 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 31 31 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 32 32 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 34 34 H 0.97002 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.00891 * 110.99568 * 321.04414 * 14 2 1 36 36 H 1.09001 * 109.46729 * 299.99669 * 15 14 2 37 37 H 1.08996 * 109.47288 * 59.99365 * 15 14 2 38 38 H 1.08998 * 109.46510 * 299.99661 * 16 15 14 39 39 H 1.08996 * 109.47126 * 59.99370 * 16 15 14 40 40 H 1.08000 * 119.99666 * 359.97438 * 18 17 16 41 41 H 1.07995 * 120.00184 * 180.27541 * 19 18 17 42 42 H 1.08003 * 120.00127 * 179.83754 * 20 19 18 43 43 H 1.08999 * 109.46828 * 60.00616 * 23 22 21 44 44 H 1.09004 * 109.47126 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.47613 * 300.00179 * 23 22 21 46 46 H 1.08002 * 120.00144 * 359.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 6 4.0671 -1.3235 2.5442 7 1 3.3687 -1.8041 3.2133 8 6 5.4185 -1.3605 2.8154 9 7 5.8568 -1.9806 3.8892 10 14 6.6265 -0.5299 1.6578 11 1 6.8322 0.8778 2.0837 12 1 7.9234 -1.2524 1.6942 13 1 6.0845 -0.5548 0.2755 14 7 2.0196 -0.6924 -1.1996 15 6 2.0824 0.2228 -2.3470 16 6 2.5949 -0.5328 -3.5747 17 6 2.6587 0.4059 -4.7518 18 6 1.5652 0.5432 -5.5867 19 6 1.6223 1.4074 -6.6638 20 6 2.7760 2.1278 -6.9116 21 6 3.8710 1.9868 -6.0800 22 16 5.3415 2.9044 -6.3963 23 6 6.3180 1.8329 -7.4867 24 8 4.8924 4.0548 -7.0993 25 8 5.9631 3.0198 -5.1237 26 6 3.8124 1.1254 -5.0001 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.7516 -1.7716 1.2053 31 1 1.6054 -0.2620 2.1368 32 1 3.8532 0.4368 1.3572 33 1 3.9994 -1.0729 0.4257 34 1 6.8075 -2.0063 4.0802 35 1 1.4495 -1.4977 -1.4102 36 1 1.0870 0.6166 -2.5525 37 1 2.7587 1.0464 -2.1182 38 1 3.5902 -0.9269 -3.3693 39 1 1.9181 -1.3561 -3.8032 40 1 0.6655 -0.0226 -5.3954 41 1 0.7666 1.5180 -7.3133 42 1 2.8215 2.8012 -7.7548 43 1 5.7568 1.6361 -8.4002 44 1 7.2565 2.3276 -7.7369 45 1 6.5271 0.8915 -6.9788 46 1 4.6680 1.0152 -4.3503 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:37 Heat of formation + Delta-G solvation = -59.661656 kcal Electronic energy + Delta-G solvation = -24896.828568 eV Core-core repulsion = 21299.162492 eV Total energy + Delta-G solvation = -3597.666076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -39.80986 -37.48698 -37.39667 -36.24429 -34.38914 -32.84743 -31.65779 -31.20769 -29.91190 -29.53939 -27.35191 -25.25312 -23.63761 -23.19168 -21.51792 -21.04424 -19.83486 -19.10369 -17.86503 -16.59163 -16.53316 -16.46521 -16.33400 -15.69170 -15.41076 -14.87592 -14.56418 -14.18811 -14.08428 -13.77887 -13.62116 -13.57863 -13.31921 -12.83972 -12.72630 -12.59608 -12.54241 -12.38159 -12.34777 -12.24202 -12.00380 -11.65326 -11.49126 -11.40176 -11.29811 -11.13722 -10.84083 -10.76967 -10.45380 -9.78371 -9.68656 -9.60249 -9.45578 -9.14283 -8.96941 -8.39678 -8.04416 -5.91270 -3.87276 -0.30152 0.49068 0.93007 2.51606 3.06439 3.43269 3.50029 3.58463 3.60047 3.75238 4.18012 4.34743 4.38496 4.57103 4.59629 4.60744 4.67895 4.90301 4.98184 5.09536 5.16537 5.20044 5.26592 5.34676 5.44460 5.45197 5.48509 5.59536 5.62775 5.69543 5.83740 5.90065 5.98404 6.04440 6.19034 6.21659 6.29715 6.49570 6.55498 6.73622 7.12801 7.32474 7.55166 7.67294 7.77700 7.97716 8.69012 9.14827 9.73189 11.22566 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.003057 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.233728 B = 9156.871761 C =11032.279218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.072 0.928 4 C -0.090 4.090 5 C -0.007 4.007 6 C -0.517 4.517 7 H 0.067 0.933 8 C 0.063 3.937 9 N -0.910 5.910 10 Si 0.879 3.121 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.260 1.260 14 N -0.675 5.675 15 C 0.064 3.936 16 C -0.083 4.083 17 C -0.093 4.093 18 C -0.063 4.063 19 C -0.139 4.139 20 C -0.033 4.033 21 C -0.657 4.657 22 S 2.499 3.501 23 C -0.650 4.650 24 O -0.940 6.940 25 O -0.932 6.932 26 C -0.020 4.020 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.002 0.998 33 H 0.031 0.969 34 H 0.260 0.740 35 H 0.336 0.664 36 H 0.025 0.975 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 6.255 -28.619 30.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.029 4.029 3 H 0.090 0.910 4 C -0.128 4.128 5 C -0.044 4.044 6 C -0.555 4.555 7 H 0.085 0.915 8 C -0.137 4.137 9 N -0.550 5.550 10 Si 0.707 3.293 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.185 1.185 14 N -0.305 5.305 15 C -0.065 4.065 16 C -0.121 4.121 17 C -0.094 4.094 18 C -0.081 4.081 19 C -0.158 4.158 20 C -0.051 4.051 21 C -0.744 4.744 22 S 2.679 3.321 23 C -0.800 4.800 24 O -0.937 6.937 25 O -0.929 6.929 26 C -0.039 4.039 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.021 0.979 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.154 0.846 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.405 7.101 -28.036 29.622 hybrid contribution -0.641 -0.318 -0.945 1.185 sum -7.046 6.782 -28.981 30.586 Atomic orbital electron populations 1.22513 0.98302 1.01665 1.01379 1.21776 0.91293 0.98347 0.91447 0.90991 1.21450 0.99017 0.98995 0.93308 1.19478 0.91482 0.95885 0.97574 1.21260 0.92795 1.33946 1.07459 0.91458 1.25031 0.98478 0.95093 0.95085 1.69934 1.14412 1.44133 1.26537 0.86777 0.80329 0.79524 0.82704 1.20556 1.21718 1.18476 1.60527 1.57812 1.09149 1.03047 1.21940 0.98984 0.95842 0.89768 1.20658 1.04014 0.96266 0.91170 1.20071 0.93784 0.98414 0.97153 1.21416 0.97695 0.95869 0.93136 1.21266 0.98372 0.97575 0.98573 1.20909 0.91826 0.95464 0.96950 1.30531 1.19973 1.17312 1.06541 1.05193 0.75317 0.75707 0.75890 1.30225 1.15401 1.17440 1.16920 1.93579 1.80386 1.44353 1.75421 1.93631 1.76044 1.85398 1.37832 1.20961 0.98659 0.90831 0.93423 0.92636 0.92075 0.93767 0.92863 0.92904 0.97937 0.95026 0.92993 0.84587 0.95691 0.90802 0.89293 0.90770 0.85315 0.85126 0.84294 0.85093 0.84997 0.84822 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 9.16 37.16 0.34 -1.95 16 2 C 0.08 1.28 2.59 -67.71 -0.18 1.10 16 3 H 0.07 1.19 7.80 -51.93 -0.40 0.78 16 4 C -0.09 -1.79 4.83 -26.74 -0.13 -1.92 16 5 C -0.01 -0.17 3.93 -27.88 -0.11 -0.28 16 6 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 7 H 0.07 2.12 7.99 -52.49 -0.42 1.71 16 8 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 9 N -0.91 -29.03 13.96 55.43 0.77 -28.26 16 10 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 11 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 14 N -0.68 -9.84 5.70 -106.73 -0.61 -10.45 16 15 C 0.06 0.79 5.47 -3.82 -0.02 0.77 16 16 C -0.08 -0.86 5.61 -27.88 -0.16 -1.01 16 17 C -0.09 -0.91 5.13 -104.62 -0.54 -1.44 16 18 C -0.06 -0.52 9.70 -39.58 -0.38 -0.90 16 19 C -0.14 -1.04 10.05 -39.59 -0.40 -1.44 16 20 C -0.03 -0.26 9.47 -39.58 -0.37 -0.64 16 21 C -0.66 -5.91 5.66 -39.58 -0.22 -6.13 16 22 S 2.50 20.52 5.80 -107.50 -0.62 19.90 16 23 C -0.65 -2.56 10.80 101.05 1.09 -1.47 16 24 O -0.94 -10.24 17.13 -57.54 -0.99 -11.23 16 25 O -0.93 -11.59 17.13 -57.54 -0.99 -12.58 16 26 C -0.02 -0.20 9.13 -39.58 -0.36 -0.56 16 27 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 29 H 0.04 0.50 7.45 -51.93 -0.39 0.12 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.00 0.06 7.57 -51.93 -0.39 -0.33 16 33 H 0.03 0.80 6.81 -51.93 -0.35 0.44 16 34 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 35 H 0.34 4.30 8.47 -39.30 -0.33 3.97 16 36 H 0.02 0.28 7.44 -51.93 -0.39 -0.10 16 37 H 0.07 1.03 8.05 -51.93 -0.42 0.62 16 38 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 39 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.14 0.86 7.57 -52.48 -0.40 0.46 16 43 H 0.13 0.28 8.14 -51.92 -0.42 -0.15 16 44 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 45 H 0.13 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.14 1.46 7.57 -52.49 -0.40 1.06 16 LS Contribution 388.88 15.07 5.86 5.86 Total: -1.00 -38.19 388.88 -10.81 -49.00 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.70 Total: -0.76 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: -1.87 Total: -29.63 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.16 Total: -38.70 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -1.97 Total: -23.81 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Atomic # 16 Polarization: 20.52 SS G_CDS: -0.62 Total: 19.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.19 -10.81 -49.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.663 kcal (2) G-P(sol) polarization free energy of solvation -38.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds