Wall clock time and date at job start Tue Mar 31 2020 16:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99594 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99875 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47061 * 90.00257 * 10 8 6 12 12 H 1.48497 * 109.46906 * 209.99430 * 10 8 6 13 13 H 1.48498 * 109.47403 * 329.99876 * 10 8 6 14 14 N 1.46910 * 109.46729 * 240.00732 * 2 1 3 15 15 C 1.46900 * 111.00108 * 85.00300 * 14 2 1 16 16 C 1.53000 * 109.47136 * 180.02562 * 15 14 2 17 17 C 1.50699 * 109.47119 * 179.97438 * 16 15 14 18 18 C 1.38259 * 120.00226 * 269.72586 * 17 16 15 19 19 C 1.38207 * 120.00220 * 179.79044 * 18 17 16 20 20 C 1.38252 * 119.99840 * 0.43513 * 19 18 17 21 21 C 1.38223 * 120.00484 * 359.81656 * 20 19 18 22 22 S 1.76197 * 120.00249 * 179.97438 * 21 20 19 23 23 C 1.81400 * 104.44673 * 269.97481 * 22 21 20 24 24 O 1.42096 * 104.28146 * 26.04826 * 22 21 20 25 25 O 1.42101 * 104.27414 * 153.90796 * 22 21 20 26 26 C 1.38215 * 119.99858 * 89.99743 * 17 16 15 27 27 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 30 30 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 31 31 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 32 32 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 34 34 H 0.97002 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.00891 * 110.99568 * 321.04414 * 14 2 1 36 36 H 1.09001 * 109.46729 * 299.99669 * 15 14 2 37 37 H 1.08996 * 109.47288 * 59.99365 * 15 14 2 38 38 H 1.08998 * 109.46510 * 299.99661 * 16 15 14 39 39 H 1.08996 * 109.47126 * 59.99370 * 16 15 14 40 40 H 1.08000 * 119.99666 * 359.97438 * 18 17 16 41 41 H 1.07995 * 120.00184 * 180.27541 * 19 18 17 42 42 H 1.08003 * 120.00127 * 179.83754 * 20 19 18 43 43 H 1.08999 * 109.46828 * 60.00616 * 23 22 21 44 44 H 1.09004 * 109.47126 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.47613 * 300.00179 * 23 22 21 46 46 H 1.08002 * 120.00144 * 359.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 6 4.0671 -1.3235 2.5442 7 1 3.3687 -1.8041 3.2133 8 6 5.4185 -1.3605 2.8154 9 7 5.8568 -1.9806 3.8892 10 14 6.6265 -0.5299 1.6578 11 1 6.8322 0.8778 2.0837 12 1 7.9234 -1.2524 1.6942 13 1 6.0845 -0.5548 0.2755 14 7 2.0196 -0.6924 -1.1996 15 6 2.0824 0.2228 -2.3470 16 6 2.5949 -0.5328 -3.5747 17 6 2.6587 0.4059 -4.7518 18 6 1.5652 0.5432 -5.5867 19 6 1.6223 1.4074 -6.6638 20 6 2.7760 2.1278 -6.9116 21 6 3.8710 1.9868 -6.0800 22 16 5.3415 2.9044 -6.3963 23 6 6.3180 1.8329 -7.4867 24 8 4.8924 4.0548 -7.0993 25 8 5.9631 3.0198 -5.1237 26 6 3.8124 1.1254 -5.0001 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.7516 -1.7716 1.2053 31 1 1.6054 -0.2620 2.1368 32 1 3.8532 0.4368 1.3572 33 1 3.9994 -1.0729 0.4257 34 1 6.8075 -2.0063 4.0802 35 1 1.4495 -1.4977 -1.4102 36 1 1.0870 0.6166 -2.5525 37 1 2.7587 1.0464 -2.1182 38 1 3.5902 -0.9269 -3.3693 39 1 1.9181 -1.3561 -3.8032 40 1 0.6655 -0.0226 -5.3954 41 1 0.7666 1.5180 -7.3133 42 1 2.8215 2.8012 -7.7548 43 1 5.7568 1.6361 -8.4002 44 1 7.2565 2.3276 -7.7369 45 1 6.5271 0.8915 -6.9788 46 1 4.6680 1.0152 -4.3503 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:35 Heat of formation + Delta-G solvation = -87.184887 kcal Electronic energy + Delta-G solvation = -24898.022065 eV Core-core repulsion = 21299.162492 eV Total energy + Delta-G solvation = -3598.859573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = -0.88 seconds Orbital eigenvalues (eV) -40.46091 -38.67413 -38.15851 -36.99813 -35.68903 -34.62966 -32.72574 -32.24527 -30.94477 -30.28115 -28.23113 -27.08644 -24.28004 -24.08305 -22.77033 -22.30021 -21.35285 -19.78781 -18.83057 -18.50544 -17.20982 -17.16561 -16.94084 -16.70975 -16.36102 -16.25950 -15.87823 -15.36221 -15.07694 -14.74512 -14.53681 -14.21887 -14.05254 -13.97604 -13.95252 -13.87173 -13.66629 -13.27576 -13.21715 -13.16447 -13.06963 -12.92515 -12.87794 -12.55541 -12.26982 -12.12496 -12.02927 -11.86540 -11.63556 -11.51192 -11.47111 -11.34477 -11.10419 -10.72217 -10.29208 -9.81997 -9.17285 -8.26763 -6.28251 -0.86871 -0.14560 0.28192 1.36387 1.37507 1.52535 1.92064 2.38894 2.43970 3.02066 3.09674 3.14163 3.27730 3.81506 3.87586 4.00138 4.06570 4.08640 4.16593 4.17451 4.22743 4.31212 4.39599 4.44782 4.50479 4.62750 4.65348 4.73544 4.89208 4.93518 4.95202 4.95830 5.02698 5.03842 5.12562 5.18504 5.24244 5.30891 5.37960 5.51308 5.60232 5.70843 5.78048 5.88475 6.21888 6.34706 6.64834 6.80445 7.36193 8.90372 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.003057 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.233728 B = 9156.871761 C =11032.279218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.089 3.911 3 H 0.063 0.937 4 C -0.084 4.084 5 C 0.000 4.000 6 C -0.528 4.528 7 H 0.030 0.970 8 C 0.003 3.997 9 N -0.955 5.955 10 Si 0.947 3.053 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.247 1.247 14 N -0.692 5.692 15 C 0.069 3.931 16 C -0.076 4.076 17 C -0.105 4.105 18 C -0.064 4.064 19 C -0.138 4.138 20 C -0.040 4.040 21 C -0.661 4.661 22 S 2.501 3.499 23 C -0.624 4.624 24 O -0.974 6.974 25 O -0.986 6.986 26 C -0.044 4.044 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.000 1.000 33 H 0.029 0.971 34 H 0.265 0.735 35 H 0.348 0.652 36 H 0.042 0.958 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.152 0.848 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.159 0.841 44 H 0.151 0.849 45 H 0.148 0.852 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 6.428 -32.193 33.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.123 4.123 5 C -0.037 4.037 6 C -0.566 4.566 7 H 0.048 0.952 8 C -0.193 4.193 9 N -0.596 5.596 10 Si 0.771 3.229 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.171 1.171 14 N -0.324 5.324 15 C -0.060 4.060 16 C -0.113 4.113 17 C -0.106 4.106 18 C -0.082 4.082 19 C -0.156 4.156 20 C -0.059 4.059 21 C -0.747 4.747 22 S 2.685 3.315 23 C -0.778 4.778 24 O -0.972 6.972 25 O -0.983 6.983 26 C -0.063 4.063 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.018 0.982 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.167 0.833 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.170 0.830 41 H 0.178 0.822 42 H 0.174 0.826 43 H 0.177 0.823 44 H 0.170 0.830 45 H 0.166 0.834 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.384 7.297 -31.595 33.257 hybrid contribution -0.368 -0.444 0.162 0.599 sum -7.752 6.853 -31.433 33.092 Atomic orbital electron populations 1.22380 0.95436 1.02581 1.02408 1.21522 0.93472 0.97044 0.90066 0.91880 1.21338 0.95777 0.99430 0.95714 1.19376 0.94767 0.94679 0.94884 1.21651 0.92542 1.33832 1.08581 0.95170 1.25969 1.00647 0.95835 0.96803 1.70075 1.15139 1.45831 1.28585 0.85695 0.77831 0.78520 0.80828 1.19775 1.20822 1.17102 1.60397 1.58509 1.10069 1.03444 1.21891 0.99381 0.95064 0.89672 1.20556 1.03494 0.96721 0.90570 1.20075 0.94368 0.98682 0.97510 1.21694 0.97812 0.95957 0.92754 1.21650 0.98942 0.96537 0.98493 1.21253 0.91725 0.95666 0.97244 1.30519 1.20747 1.16938 1.06541 1.04906 0.75197 0.75980 0.75421 1.30022 1.15144 1.16368 1.16229 1.93527 1.81131 1.46975 1.75529 1.93562 1.76811 1.86637 1.41300 1.20997 0.98920 0.92161 0.94181 0.91783 0.92007 0.91766 0.93288 0.93478 0.98179 0.95275 0.92663 0.83310 0.94022 0.93133 0.90872 0.88747 0.83048 0.82233 0.82601 0.82315 0.83037 0.83364 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 9.16 71.98 0.66 -3.24 16 2 C 0.09 2.70 2.59 44.91 0.12 2.82 16 3 H 0.06 2.03 7.80 -2.39 -0.02 2.01 16 4 C -0.08 -3.37 4.83 30.59 0.15 -3.22 16 5 C 0.00 0.02 3.93 29.85 0.12 0.14 16 6 C -0.53 -32.04 9.66 25.60 0.25 -31.79 16 7 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 8 C 0.00 0.21 5.47 84.66 0.46 0.68 16 9 N -0.95 -62.37 13.96 21.45 0.30 -62.08 16 10 Si 0.95 47.52 27.47 68.60 1.88 49.40 16 11 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 13 H -0.25 -11.79 6.54 99.48 0.65 -11.14 16 14 N -0.69 -19.24 5.70 -491.57 -2.80 -22.04 16 15 C 0.07 1.61 5.47 86.30 0.47 2.09 16 16 C -0.08 -1.45 5.61 29.85 0.17 -1.29 16 17 C -0.10 -1.91 5.13 -19.87 -0.10 -2.01 16 18 C -0.06 -0.87 9.70 22.27 0.22 -0.66 16 19 C -0.14 -1.65 10.05 22.27 0.22 -1.42 16 20 C -0.04 -0.56 9.47 22.27 0.21 -0.35 16 21 C -0.66 -11.36 5.66 22.27 0.13 -11.23 16 22 S 2.50 40.19 5.80 -56.49 -0.33 39.86 16 23 C -0.62 -3.13 10.80 113.37 1.22 -1.90 16 24 O -0.97 -21.00 17.13 -127.65 -2.19 -23.18 16 25 O -0.99 -25.59 17.13 -127.65 -2.19 -27.78 16 26 C -0.04 -0.88 9.13 22.27 0.20 -0.68 16 27 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 28 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.06 1.25 7.45 -2.38 -0.02 1.23 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.00 -0.01 7.57 -2.39 -0.02 -0.03 16 33 H 0.03 1.46 6.81 -2.39 -0.02 1.44 16 34 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 35 H 0.35 8.19 8.47 -89.70 -0.76 7.43 16 36 H 0.04 0.84 7.44 -2.39 -0.02 0.82 16 37 H 0.05 1.41 8.05 -2.39 -0.02 1.39 16 38 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 39 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 40 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 41 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.16 1.57 7.57 -2.91 -0.02 1.55 16 43 H 0.16 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.13 2.85 7.57 -2.91 -0.02 2.83 16 Total: -1.00 -85.45 388.88 -0.69 -86.14 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.14 Total: 11.76 kcal Atomic # 6 Polarization: -56.58 SS G_CDS: 4.49 Total: -52.09 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -2.50 Total: -84.12 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -4.37 Total: -50.96 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.88 Total: 49.40 kcal Atomic # 16 Polarization: 40.19 SS G_CDS: -0.33 Total: 39.86 kcal Total: -85.45 -0.69 -86.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.044 kcal (2) G-P(sol) polarization free energy of solvation -85.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.88 seconds