Wall clock time and date at job start Tue Mar 31 2020 16:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47340 * 2 1 4 4 O 1.45198 * 109.47065 * 119.99807 * 2 1 3 5 5 C 1.34706 * 117.00283 * 149.99734 * 4 2 1 6 6 O 1.21474 * 120.00204 * 0.02562 * 5 4 2 7 7 C 1.47750 * 120.00505 * 180.02562 * 5 4 2 8 8 C 1.39680 * 120.10591 * 0.02562 * 7 5 4 9 9 C 1.37993 * 120.00535 * 179.97438 * 8 7 5 10 10 C 1.38233 * 120.23946 * 0.02562 * 9 8 7 11 11 C 1.39047 * 120.22444 * 359.97438 * 10 9 8 12 12 N 1.39633 * 120.00879 * 179.97438 * 11 10 9 13 13 C 1.38812 * 119.99624 * 328.26967 * 12 11 10 14 14 C 1.39613 * 119.84601 * 334.43257 * 13 12 11 15 15 C 1.36310 * 120.15810 * 179.75740 * 14 13 12 16 16 C 1.40908 * 119.83878 * 0.54108 * 15 14 13 17 17 C 1.41106 * 120.15229 * 179.69208 * 16 15 14 18 18 H 1.08004 * 119.99660 * 207.75106 * 17 16 15 19 19 C 1.39844 * 120.00105 * 27.75562 * 17 16 15 20 20 N 1.30911 * 119.99991 * 12.23622 * 19 17 16 21 21 Si 1.86798 * 120.00129 * 192.24216 * 19 17 16 22 22 H 1.48496 * 109.47367 * 89.99601 * 21 19 17 23 23 H 1.48498 * 109.46976 * 209.99800 * 21 19 17 24 24 H 1.48502 * 109.46828 * 329.99503 * 21 19 17 25 25 C 1.40901 * 119.69354 * 359.71768 * 16 15 14 26 26 C 1.36315 * 119.84176 * 359.97438 * 25 16 15 27 27 C 1.38726 * 119.98600 * 0.23585 * 11 10 9 28 28 H 1.08999 * 109.46929 * 300.00584 * 1 2 3 29 29 H 1.09007 * 109.47050 * 59.99853 * 1 2 3 30 30 H 1.08998 * 109.47253 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47094 * 239.99878 * 2 1 3 32 32 H 1.09001 * 109.47160 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47052 * 299.99432 * 3 2 1 34 34 H 1.09004 * 109.47127 * 59.99898 * 3 2 1 35 35 H 1.08000 * 120.00041 * 0.02562 * 8 7 5 36 36 H 1.08006 * 119.87852 * 179.97438 * 9 8 7 37 37 H 1.08001 * 119.88357 * 179.97438 * 10 9 8 38 38 H 0.96995 * 120.00178 * 148.53699 * 12 11 10 39 39 H 1.08001 * 119.91641 * 0.02562 * 14 13 12 40 40 H 1.07996 * 120.08564 * 180.26000 * 15 14 13 41 41 H 0.96996 * 119.99982 * 180.02562 * 20 19 17 42 42 H 1.08001 * 120.08238 * 179.97438 * 25 16 15 43 43 H 1.07997 * 119.92268 * 179.97438 * 26 25 16 44 44 H 1.08003 * 120.11783 * 179.74746 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0139 -0.6844 1.1856 5 6 3.1977 -1.3193 1.0849 6 8 3.8093 -1.3012 0.0354 7 6 3.7525 -2.0376 2.2507 8 6 3.0510 -2.0603 3.4584 9 6 3.5707 -2.7323 4.5458 10 6 4.7856 -3.3842 4.4457 11 6 5.4921 -3.3679 3.2482 12 7 6.7191 -4.0275 3.1523 13 6 7.5454 -4.1212 4.2637 14 6 7.4571 -3.1655 5.2777 15 6 8.2621 -3.2541 6.3741 16 6 9.1928 -4.3070 6.4774 17 6 10.0338 -4.4014 7.6065 18 1 11.0000 -4.8764 7.5219 19 6 9.6161 -3.8799 8.8351 20 7 8.3680 -3.5233 9.0044 21 14 10.8392 -3.6920 10.2344 22 1 11.4722 -2.3507 10.1618 23 1 10.1324 -3.8363 11.5323 24 1 11.8855 -4.7398 10.1213 25 6 9.2802 -5.2648 5.4478 26 6 8.4646 -5.1675 4.3598 27 6 4.9804 -2.6916 2.1504 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 2.1013 -1.5526 3.5409 36 1 3.0268 -2.7482 5.4788 37 1 5.1872 -3.9081 5.3006 38 1 6.9957 -4.4169 2.3081 39 1 6.7463 -2.3566 5.1950 40 1 8.1899 -2.5166 7.1597 41 1 8.0784 -3.1612 9.8564 42 1 9.9916 -6.0742 5.5203 43 1 8.5308 -5.9007 3.5697 44 1 5.5293 -2.6741 1.2205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174916534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:18 Heat of formation + Delta-G solvation = -44.384905 kcal Electronic energy + Delta-G solvation = -25839.774390 eV Core-core repulsion = 22107.326813 eV Total energy + Delta-G solvation = -3732.447577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.65710 -39.37699 -37.69743 -36.77094 -35.14407 -33.43309 -33.10879 -31.06768 -30.00085 -29.60489 -28.06682 -27.59505 -24.98957 -24.45190 -22.28718 -21.88944 -21.00802 -20.79280 -20.07860 -18.04755 -17.38263 -17.08333 -16.48651 -16.10485 -15.80879 -15.48038 -15.17552 -14.51377 -14.44041 -14.02494 -13.97266 -13.54890 -13.41735 -13.20940 -12.92474 -12.61846 -12.57206 -12.41162 -12.10439 -12.00530 -11.87838 -11.80349 -11.44377 -11.28346 -11.16358 -11.12377 -10.96375 -10.73918 -10.63990 -10.46289 -10.11002 -9.83954 -9.47017 -9.20093 -8.84094 -8.03157 -7.65706 -6.78018 -6.58549 -4.28905 0.86465 1.59661 2.52995 2.59381 2.79454 2.95670 3.06425 3.09423 3.17928 3.91661 3.97898 4.04019 4.49509 4.59991 4.61922 4.62648 4.84708 5.05481 5.21053 5.31338 5.39027 5.42465 5.45197 5.49242 5.60652 5.67844 5.72084 5.83618 5.86204 6.00135 6.09916 6.17763 6.34376 6.41965 6.57239 6.62225 6.75877 6.82330 6.99158 7.05052 7.18170 7.39646 7.51275 7.67774 7.74613 7.97175 8.09413 8.26983 8.38362 8.58068 8.85659 8.92347 10.19568 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024120 B = 0.002272 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.564304 B =12320.439536 C =12884.057037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 C -0.170 4.170 4 O -0.348 6.348 5 C 0.513 3.487 6 O -0.512 6.512 7 C -0.099 4.099 8 C -0.116 4.116 9 C -0.099 4.099 10 C -0.127 4.127 11 C 0.197 3.803 12 N -0.675 5.675 13 C 0.034 3.966 14 C -0.132 4.132 15 C -0.134 4.134 16 C 0.093 3.907 17 C -0.459 4.459 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.802 5.802 21 Si 0.910 3.090 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.200 4.200 26 C -0.124 4.124 27 C -0.125 4.125 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.398 0.602 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.280 0.720 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.373 5.629 -11.080 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.025 3.975 3 C -0.228 4.228 4 O -0.265 6.265 5 C 0.359 3.641 6 O -0.401 6.401 7 C -0.101 4.101 8 C -0.136 4.136 9 C -0.118 4.118 10 C -0.149 4.149 11 C 0.095 3.905 12 N -0.296 5.296 13 C -0.060 4.060 14 C -0.153 4.153 15 C -0.154 4.154 16 C 0.090 3.910 17 C -0.489 4.489 18 H 0.095 0.905 19 C -0.144 4.144 20 N -0.428 5.428 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.187 1.187 25 C -0.220 4.220 26 C -0.145 4.145 27 C -0.147 4.147 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.232 0.768 39 H 0.113 0.887 40 H 0.141 0.859 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.314 5.752 -11.084 18.254 hybrid contribution 0.641 -0.028 0.239 0.685 sum -12.673 5.723 -10.846 17.635 Atomic orbital electron populations 1.21887 0.92394 1.03212 1.03126 1.22724 0.94916 0.92732 0.87135 1.22216 1.02335 0.95219 1.03008 1.86621 1.36345 1.62737 1.40821 1.21335 0.78888 0.75847 0.88014 1.90795 1.59522 1.59390 1.30405 1.18688 0.96471 1.02684 0.92216 1.21150 1.00115 1.00583 0.91783 1.20939 0.95395 0.97052 0.98403 1.21460 0.94165 1.00740 0.98563 1.17585 0.86343 0.92901 0.93693 1.41615 1.15894 1.60094 1.12026 1.17227 0.98537 0.99407 0.90859 1.20364 1.01783 0.97533 0.95581 1.21017 0.98348 0.99249 0.96760 1.17640 0.91776 0.89744 0.91802 1.19491 1.03070 1.33225 0.93120 0.90548 1.25875 0.95372 0.93014 1.00181 1.69811 1.15473 1.31891 1.25654 0.86274 0.80952 0.79698 0.79554 1.19379 1.20341 1.18725 1.20612 1.03692 1.00650 0.97021 1.20001 0.99327 0.96430 0.98695 1.20788 0.95917 0.98318 0.99695 0.91307 0.90439 0.91639 0.89760 0.91859 0.90783 0.91442 0.85236 0.85343 0.84393 0.76792 0.88737 0.85868 0.90957 0.88617 0.89141 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.57 37.16 0.36 -0.66 16 2 C 0.08 0.77 3.19 -26.73 -0.09 0.69 16 3 C -0.17 -1.46 9.55 37.16 0.35 -1.11 16 4 O -0.35 -4.28 9.13 -40.51 -0.37 -4.65 16 5 C 0.51 7.43 7.87 34.62 0.27 7.70 16 6 O -0.51 -8.38 15.60 -19.25 -0.30 -8.68 16 7 C -0.10 -1.45 5.87 -105.01 -0.62 -2.07 16 8 C -0.12 -1.54 9.61 -39.13 -0.38 -1.91 16 9 C -0.10 -1.36 10.02 -39.67 -0.40 -1.76 16 10 C -0.13 -2.08 7.71 -39.28 -0.30 -2.38 16 11 C 0.20 3.27 5.89 -83.82 -0.49 2.77 16 12 N -0.68 -11.73 5.42 -8.33 -0.05 -11.77 16 13 C 0.03 0.70 6.06 -83.68 -0.51 0.19 16 14 C -0.13 -2.95 7.77 -39.76 -0.31 -3.26 16 15 C -0.13 -3.33 8.61 -39.27 -0.34 -3.67 16 16 C 0.09 2.39 5.56 -106.79 -0.59 1.79 16 17 C -0.46 -11.81 9.04 -37.89 -0.34 -12.15 16 18 H 0.08 1.90 7.87 -52.48 -0.41 1.48 16 19 C 0.07 1.76 5.23 -17.34 -0.09 1.67 16 20 N -0.80 -20.17 10.84 55.54 0.60 -19.57 16 21 Si 0.91 18.38 29.58 -169.99 -5.03 13.35 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 23 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.20 -4.66 9.74 -39.27 -0.38 -5.05 16 26 C -0.12 -2.62 9.87 -39.76 -0.39 -3.01 16 27 C -0.12 -1.93 9.51 -38.94 -0.37 -2.30 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.88 7.16 -51.93 -0.37 0.51 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.13 1.45 7.60 -52.49 -0.40 1.05 16 36 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.14 2.51 6.56 -52.49 -0.34 2.16 16 38 H 0.40 5.98 8.88 -40.82 -0.36 5.62 16 39 H 0.09 2.01 6.29 -52.49 -0.33 1.68 16 40 H 0.12 3.20 6.18 -52.49 -0.32 2.87 16 41 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 42 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 43 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 44 H 0.13 1.98 7.65 -52.48 -0.40 1.58 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -27.72 372.08 -10.03 -37.75 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -5.89 Total: 12.46 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -4.62 Total: -24.50 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.56 Total: -31.34 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.67 Total: -13.33 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.72 -10.03 -37.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174916534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.632 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds