Wall clock time and date at job start Tue Mar 31 2020 16:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46711 * 2 1 4 4 O 1.45194 * 109.47308 * 119.99908 * 2 1 3 5 5 C 1.34759 * 116.99803 * 90.00133 * 4 2 1 6 6 O 1.21517 * 120.00411 * 0.02562 * 5 4 2 7 7 C 1.47386 * 120.00231 * 180.02562 * 5 4 2 8 8 C 1.39857 * 120.07681 * 180.02562 * 7 5 4 9 9 C 1.37099 * 119.92882 * 180.02562 * 8 7 5 10 10 C 1.39252 * 120.07372 * 0.02735 * 9 8 7 11 11 N 1.39061 * 119.92889 * 179.97438 * 10 9 8 12 12 C 1.39732 * 120.00315 * 154.57031 * 11 10 9 13 13 C 1.39348 * 119.95104 * 328.36412 * 12 11 10 14 14 C 1.38472 * 120.42763 * 180.02562 * 13 12 11 15 15 C 1.37693 * 120.32080 * 359.97438 * 14 13 12 16 16 C 1.40745 * 119.89873 * 0.02562 * 15 14 13 17 17 C 1.41410 * 120.20717 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00354 * 27.28016 * 17 16 15 19 19 C 1.39933 * 119.99964 * 207.27640 * 17 16 15 20 20 N 1.30835 * 120.00112 * 11.89428 * 19 17 16 21 21 Si 1.86794 * 120.00028 * 191.89194 * 19 17 16 22 22 H 1.48507 * 109.47293 * 94.97088 * 21 19 17 23 23 H 1.48500 * 109.47517 * 214.96917 * 21 19 17 24 24 H 1.48498 * 109.47409 * 334.97347 * 21 19 17 25 25 C 1.38290 * 119.95817 * 148.09753 * 12 11 10 26 26 C 1.39254 * 120.14396 * 0.24172 * 10 9 8 27 27 C 1.37101 * 120.07295 * 359.45638 * 26 10 9 28 28 H 1.08996 * 109.47548 * 59.99873 * 1 2 3 29 29 H 1.09003 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47334 * 299.99542 * 1 2 3 31 31 H 1.08998 * 109.47334 * 240.00458 * 2 1 3 32 32 H 1.09005 * 109.47106 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47661 * 300.00171 * 3 2 1 34 34 H 1.08998 * 109.47373 * 60.00167 * 3 2 1 35 35 H 1.08001 * 120.03609 * 359.97438 * 8 7 5 36 36 H 1.08003 * 119.96865 * 179.97438 * 9 8 7 37 37 H 0.97004 * 119.99904 * 334.28039 * 11 10 9 38 38 H 1.08006 * 119.78905 * 0.02782 * 13 12 11 39 39 H 1.07998 * 119.83768 * 180.02562 * 14 13 12 40 40 H 1.08006 * 120.04851 * 179.97438 * 15 14 13 41 41 H 0.96996 * 119.99763 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.15957 * 359.97430 * 25 12 11 43 43 H 1.08000 * 119.96158 * 179.71202 * 26 10 9 44 44 H 1.08002 * 120.03760 * 180.27413 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 2.2180 -2.0127 1.0846 6 8 1.9978 -2.5832 0.0346 7 6 2.7081 -2.7735 2.2479 8 6 2.9208 -4.1519 2.1448 9 6 3.3763 -4.8567 3.2290 10 6 3.6265 -4.2017 4.4321 11 7 4.0880 -4.9197 5.5300 12 6 4.8278 -4.2756 6.5252 13 6 5.6515 -3.2014 6.1945 14 6 6.3894 -2.5564 7.1728 15 6 6.3165 -2.9696 8.4842 16 6 5.4889 -4.0531 8.8334 17 6 5.4095 -4.4833 10.1782 18 1 5.5920 -3.7839 10.9806 19 6 5.0945 -5.8153 10.4692 20 7 5.1020 -6.7124 9.5169 21 14 4.6634 -6.3125 12.2174 22 1 3.1881 -6.2970 12.3870 23 1 5.1778 -7.6797 12.4844 24 1 5.2812 -5.3562 13.1707 25 6 4.7373 -4.7016 7.8378 26 6 3.4104 -2.8303 4.5398 27 6 2.9610 -2.1185 3.4576 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9565 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 2.7257 -4.6608 1.2124 36 1 3.5404 -5.9213 3.1502 37 1 3.8926 -5.8667 5.6071 38 1 5.7149 -2.8698 5.1686 39 1 7.0244 -1.7246 6.9059 40 1 6.8943 -2.4636 9.2436 41 1 4.8840 -7.6358 9.7188 42 1 4.0955 -5.5310 8.0960 43 1 3.6011 -2.3260 5.4756 44 1 2.7978 -1.0541 3.5405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175259182.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:35 Heat of formation + Delta-G solvation = -49.708765 kcal Electronic energy + Delta-G solvation = -25872.445297 eV Core-core repulsion = 22139.766860 eV Total energy + Delta-G solvation = -3732.678437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.55035 -39.43664 -37.68069 -36.67713 -35.04157 -33.52069 -33.24547 -31.00346 -30.15458 -29.63197 -27.69285 -27.54026 -25.41923 -24.01376 -22.70606 -21.77151 -21.02182 -20.65247 -20.07089 -18.06457 -17.63368 -17.13269 -16.51556 -15.99053 -15.93323 -15.01176 -14.87823 -14.66494 -14.39442 -14.13483 -13.85493 -13.48356 -13.36235 -13.30657 -12.99384 -12.60553 -12.56606 -12.53249 -12.46215 -12.11407 -11.95077 -11.76190 -11.36479 -11.21099 -11.15196 -11.01313 -10.82337 -10.66738 -10.61936 -10.36122 -10.13900 -9.83816 -9.67573 -9.30988 -8.88811 -8.16550 -7.50369 -6.91003 -6.55250 -4.50807 0.95605 1.62383 2.57234 2.68667 2.74390 2.97743 3.02075 3.05416 3.13803 3.82809 3.86261 4.04005 4.54779 4.56028 4.68822 4.76734 4.90894 4.99573 5.12568 5.25972 5.45458 5.49258 5.50355 5.53137 5.53935 5.67903 5.77614 5.79301 5.89710 6.11373 6.16292 6.32154 6.37597 6.49936 6.53936 6.56922 6.66284 6.82989 6.94132 7.00613 7.17027 7.17813 7.56645 7.69480 7.81482 7.88082 7.94635 8.21748 8.22749 8.54904 8.78700 8.82662 10.11001 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023281 B = 0.002307 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.418806 B =12134.780306 C =12572.036712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.080 3.920 3 C -0.150 4.150 4 O -0.351 6.351 5 C 0.518 3.482 6 O -0.525 6.525 7 C -0.201 4.201 8 C -0.011 4.011 9 C -0.207 4.207 10 C 0.254 3.746 11 N -0.670 5.670 12 C 0.159 3.841 13 C -0.262 4.262 14 C -0.076 4.076 15 C -0.233 4.233 16 C 0.125 3.875 17 C -0.459 4.459 18 H 0.079 0.921 19 C 0.074 3.926 20 N -0.800 5.800 21 Si 0.911 3.089 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.186 4.186 26 C -0.187 4.187 27 C -0.021 4.021 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.406 0.594 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.280 0.720 42 H 0.125 0.875 43 H 0.141 0.859 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.487 7.686 -13.024 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.026 3.974 3 C -0.207 4.207 4 O -0.268 6.268 5 C 0.365 3.635 6 O -0.416 6.416 7 C -0.204 4.204 8 C -0.030 4.030 9 C -0.230 4.230 10 C 0.147 3.853 11 N -0.287 5.287 12 C 0.066 3.934 13 C -0.284 4.284 14 C -0.095 4.095 15 C -0.253 4.253 16 C 0.122 3.878 17 C -0.489 4.489 18 H 0.097 0.903 19 C -0.143 4.143 20 N -0.426 5.426 21 Si 0.736 3.264 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.185 1.185 25 C -0.208 4.208 26 C -0.209 4.209 27 C -0.041 4.041 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.242 0.758 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.143 0.857 43 H 0.159 0.841 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.509 7.372 -13.274 16.520 hybrid contribution -0.223 -0.824 0.659 1.078 sum -6.732 6.548 -12.615 15.726 Atomic orbital electron populations 1.22207 0.94489 1.03081 1.02914 1.22677 0.94490 0.92997 0.87282 1.21889 1.02190 0.93546 1.03049 1.86633 1.77401 1.22140 1.40651 1.21184 0.73745 0.80573 0.87966 1.90778 1.50096 1.70142 1.30566 1.18747 1.15013 0.93591 0.93056 1.20728 0.92387 0.91795 0.98096 1.20536 1.10199 1.00623 0.91609 1.18184 0.88419 0.91890 0.86766 1.42328 1.55093 1.11290 1.20035 1.17628 0.93093 0.95109 0.87607 1.20220 1.06740 1.03351 0.98039 1.20374 0.97827 0.98004 0.93323 1.21048 1.05229 1.04005 0.94977 1.17409 0.87659 0.89604 0.93104 1.19602 1.41778 0.94755 0.92803 0.90273 1.25907 0.92521 0.96467 0.99421 1.69787 1.35515 1.03066 1.34241 0.86241 0.79540 0.78469 0.82144 1.19391 1.20263 1.18546 1.21135 1.04637 1.05496 0.89512 1.20973 1.06004 0.93366 1.00548 1.21041 0.92450 0.99780 0.90794 0.90901 0.91951 0.91505 0.89854 0.91630 0.90541 0.91325 0.85101 0.85393 0.75762 0.88679 0.88925 0.88778 0.90954 0.85732 0.84115 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.55 37.16 0.35 -1.14 16 2 C 0.08 0.82 3.19 -26.73 -0.09 0.73 16 3 C -0.15 -1.13 9.57 37.16 0.36 -0.77 16 4 O -0.35 -4.53 9.12 -40.65 -0.37 -4.90 16 5 C 0.52 7.59 7.86 34.45 0.27 7.86 16 6 O -0.53 -8.56 15.60 -19.28 -0.30 -8.86 16 7 C -0.20 -2.93 5.88 -104.96 -0.62 -3.55 16 8 C -0.01 -0.15 9.56 -39.39 -0.38 -0.53 16 9 C -0.21 -2.94 9.90 -39.62 -0.39 -3.33 16 10 C 0.25 4.11 6.04 -83.83 -0.51 3.61 16 11 N -0.67 -11.94 5.43 -8.45 -0.05 -11.98 16 12 C 0.16 3.39 5.89 -83.82 -0.49 2.90 16 13 C -0.26 -5.47 7.74 -39.08 -0.30 -5.77 16 14 C -0.08 -1.62 10.02 -39.69 -0.40 -2.01 16 15 C -0.23 -5.40 9.79 -38.83 -0.38 -5.78 16 16 C 0.13 3.16 5.56 -106.85 -0.59 2.56 16 17 C -0.46 -11.61 9.06 -37.74 -0.34 -11.95 16 18 H 0.08 1.93 7.87 -52.48 -0.41 1.52 16 19 C 0.07 1.77 5.24 -17.34 -0.09 1.68 16 20 N -0.80 -19.62 10.82 55.55 0.60 -19.02 16 21 Si 0.91 18.01 29.57 -169.99 -5.03 12.99 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 25 C -0.19 -4.47 8.57 -38.67 -0.33 -4.80 16 26 C -0.19 -2.99 7.80 -39.62 -0.31 -3.30 16 27 C -0.02 -0.31 9.58 -39.39 -0.38 -0.68 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.91 7.16 -51.93 -0.37 0.54 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.13 1.69 7.64 -52.49 -0.40 1.29 16 36 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 37 H 0.41 6.61 8.88 -40.82 -0.36 6.25 16 38 H 0.10 1.86 6.55 -52.48 -0.34 1.52 16 39 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 41 H 0.28 6.26 8.30 -40.82 -0.34 5.93 16 42 H 0.12 3.10 6.17 -52.49 -0.32 2.78 16 43 H 0.14 2.42 6.31 -52.49 -0.33 2.09 16 44 H 0.13 1.66 7.60 -52.49 -0.40 1.26 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -27.21 372.17 -10.04 -37.24 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -5.89 Total: 13.19 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -4.61 Total: -24.27 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.56 Total: -31.00 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.67 Total: -13.76 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.21 -10.04 -37.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175259182.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.467 kcal (2) G-P(sol) polarization free energy of solvation -27.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds