Wall clock time and date at job start Tue Mar 31 2020 16:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46954 * 2 1 4 4 C 1.50705 * 109.47198 * 119.99475 * 2 1 3 5 5 O 1.21288 * 119.99537 * 120.00048 * 4 2 1 6 6 N 1.34769 * 120.00076 * 300.00439 * 4 2 1 7 7 C 1.46501 * 120.00209 * 359.97438 * 6 4 2 8 8 C 1.37098 * 120.00142 * 179.97438 * 6 4 2 9 9 H 1.07996 * 119.99984 * 323.63721 * 8 6 4 10 10 C 1.38952 * 119.99802 * 143.63517 * 8 6 4 11 11 N 1.31414 * 119.99986 * 157.93897 * 10 8 6 12 12 Si 1.86803 * 120.00082 * 337.93581 * 10 8 6 13 13 H 1.48499 * 109.46664 * 95.50344 * 12 10 8 14 14 H 1.48505 * 109.47124 * 215.50212 * 12 10 8 15 15 H 1.48496 * 109.47144 * 335.50344 * 12 10 8 16 16 C 1.50701 * 109.47290 * 239.99682 * 2 1 3 17 17 C 1.38290 * 119.97002 * 299.97595 * 16 2 1 18 18 C 1.38252 * 120.11533 * 180.02562 * 17 16 2 19 19 C 1.38160 * 120.05837 * 359.97438 * 18 17 16 20 20 C 1.38732 * 119.93945 * 0.03840 * 19 18 17 21 21 O 1.35891 * 120.05941 * 179.97438 * 20 19 18 22 22 C 1.35888 * 117.99985 * 257.82902 * 21 20 19 23 23 C 1.38753 * 120.05800 * 359.67038 * 22 21 20 24 24 C 1.38140 * 119.94112 * 179.69639 * 23 22 21 25 25 C 1.38278 * 120.05513 * 0.58153 * 24 23 22 26 26 C 1.38272 * 120.11450 * 359.71777 * 25 24 23 27 27 C 1.38131 * 120.06042 * 359.97438 * 26 25 24 28 28 C 1.38118 * 119.97150 * 120.00159 * 16 2 1 29 29 H 1.08998 * 109.47079 * 60.00611 * 1 2 3 30 30 H 1.09000 * 109.46596 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46872 * 300.00326 * 1 2 3 32 32 H 1.08993 * 109.47635 * 88.47117 * 7 6 4 33 33 H 1.08998 * 109.47223 * 208.48024 * 7 6 4 34 34 H 1.09002 * 109.46596 * 328.47261 * 7 6 4 35 35 H 0.96998 * 119.99812 * 180.02562 * 11 10 8 36 36 H 1.08005 * 119.94586 * 0.04753 * 17 16 2 37 37 H 1.07995 * 119.97085 * 180.02562 * 18 17 16 38 38 H 1.07996 * 120.02792 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.03438 * 359.97438 * 23 22 21 40 40 H 1.08000 * 119.97532 * 180.29643 * 24 23 22 41 41 H 1.07993 * 119.93996 * 179.69928 * 25 24 23 42 42 H 1.07995 * 119.96738 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.03419 * 179.97438 * 27 26 25 44 44 H 1.08003 * 120.02610 * 359.69562 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6964 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 0.8649 0.9416 2.5890 8 6 2.1633 -0.8963 3.5740 9 1 2.2452 -1.9731 3.5801 10 6 2.5207 -0.1660 4.7008 11 7 2.5381 -0.7446 5.8806 12 14 2.9765 1.6383 4.5386 13 1 1.7843 2.4773 4.8216 14 1 4.0535 1.9658 5.5073 15 1 3.4540 1.9061 3.1583 16 6 2.0324 -0.7105 -1.2304 17 6 1.6984 -2.0346 -1.4483 18 6 2.1580 -2.6895 -2.5758 19 6 2.9522 -2.0220 -3.4883 20 6 3.2890 -0.6937 -3.2719 21 8 4.0704 -0.0349 -4.1675 22 6 5.3816 0.1448 -3.8592 23 6 5.8846 -0.3321 -2.6573 24 6 7.2193 -0.1535 -2.3491 25 6 8.0511 0.5104 -3.2320 26 6 7.5508 0.9921 -4.4277 27 6 6.2184 0.8106 -4.7435 28 6 2.8265 -0.0387 -2.1392 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.1843 0.6464 2.5948 33 1 1.1040 1.4521 3.5218 34 1 1.0488 1.6128 1.7500 35 1 2.7873 -0.2347 6.6672 36 1 1.0770 -2.5581 -0.7367 37 1 1.8954 -3.7234 -2.7439 38 1 3.3107 -2.5339 -4.3691 39 1 5.2344 -0.8464 -1.9651 40 1 7.6125 -0.5287 -1.4159 41 1 9.0931 0.6532 -2.9871 42 1 8.2027 1.5099 -5.1157 43 1 5.8280 1.1873 -5.6773 44 1 3.0833 0.9967 -1.9708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182734346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:41 Heat of formation + Delta-G solvation = 9.871069 kcal Electronic energy + Delta-G solvation = -27146.127210 eV Core-core repulsion = 23416.032348 eV Total energy + Delta-G solvation = -3730.094862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.92629 -39.56317 -38.38839 -37.20678 -34.87104 -33.74267 -31.98854 -31.22296 -30.55341 -29.92626 -28.86709 -26.52624 -25.41137 -24.02884 -23.46898 -22.69754 -22.00149 -21.07202 -19.10468 -17.99471 -17.14389 -16.82484 -16.50188 -16.07213 -15.91839 -15.83179 -15.45727 -14.70122 -14.43635 -14.19522 -13.97033 -13.73795 -13.59085 -13.46369 -13.25039 -12.87444 -12.71389 -12.56568 -12.21676 -12.04460 -11.96343 -11.75018 -11.71186 -11.52148 -11.42280 -11.07267 -10.89910 -10.81432 -10.63520 -10.29197 -9.93926 -9.10651 -9.08958 -8.85723 -8.55320 -8.42062 -8.27405 -7.79079 -6.43700 -3.99780 1.19780 1.25689 1.35752 1.42379 2.98722 3.14517 3.18713 3.22458 3.66802 3.69758 3.88736 4.10495 4.39876 4.76616 4.80441 4.84194 4.93895 4.95812 5.08567 5.14712 5.22211 5.30084 5.36181 5.41255 5.47773 5.49493 5.53507 5.61605 5.72041 5.87268 5.92554 5.93257 6.00332 6.05196 6.07101 6.21077 6.23221 6.33654 6.35547 6.42432 6.46365 6.53593 6.68293 6.77197 6.94489 7.49937 7.60544 8.23520 8.46495 8.92092 9.27585 9.72310 10.68410 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.003774 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.635639 B = 7416.441278 C = 8676.748560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.075 4.075 3 H 0.092 0.908 4 C 0.469 3.531 5 O -0.557 6.557 6 N -0.467 5.467 7 C 0.061 3.939 8 C -0.317 4.317 9 H 0.106 0.894 10 C 0.059 3.941 11 N -0.863 5.863 12 Si 0.879 3.121 13 H -0.275 1.275 14 H -0.288 1.288 15 H -0.266 1.266 16 C -0.034 4.034 17 C -0.075 4.075 18 C -0.109 4.109 19 C -0.127 4.127 20 C 0.072 3.928 21 O -0.260 6.260 22 C 0.123 3.877 23 C -0.190 4.190 24 C -0.080 4.080 25 C -0.157 4.157 26 C -0.088 4.088 27 C -0.152 4.152 28 C -0.127 4.127 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.274 0.726 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.592 4.505 -18.711 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.097 4.097 3 H 0.110 0.890 4 C 0.256 3.744 5 O -0.438 6.438 6 N -0.189 5.189 7 C -0.083 4.083 8 C -0.444 4.444 9 H 0.124 0.876 10 C -0.146 4.146 11 N -0.499 5.499 12 Si 0.707 3.293 13 H -0.202 1.202 14 H -0.215 1.215 15 H -0.190 1.190 16 C -0.035 4.035 17 C -0.093 4.093 18 C -0.127 4.127 19 C -0.146 4.146 20 C 0.031 3.969 21 O -0.172 6.172 22 C 0.080 3.920 23 C -0.209 4.209 24 C -0.098 4.098 25 C -0.176 4.176 26 C -0.106 4.106 27 C -0.170 4.170 28 C -0.145 4.145 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.891 4.071 -18.697 19.228 hybrid contribution 0.301 1.060 0.395 1.170 sum 2.192 5.130 -18.301 19.133 Atomic orbital electron populations 1.22045 0.92740 1.03126 1.02969 1.20338 0.97378 0.99893 0.92109 0.88964 1.19998 0.83216 0.87462 0.83709 1.90574 1.39926 1.27509 1.85788 1.43616 1.43990 1.25972 1.05313 1.22178 0.95463 0.89292 1.01321 1.19057 1.43462 0.93807 0.88068 0.87623 1.25350 0.95824 0.98648 0.94815 1.69756 1.44113 1.37978 0.98055 0.86947 0.78288 0.85209 0.78854 1.20235 1.21455 1.19004 1.19291 0.96003 0.94183 0.93985 1.21079 0.98487 0.93746 0.96003 1.20985 0.97879 0.99842 0.93959 1.21136 1.00595 0.92400 1.00424 1.18451 0.96034 0.91339 0.91117 1.84352 1.17420 1.71722 1.43703 1.19242 0.82677 0.96095 0.93986 1.21507 0.97378 1.04722 0.97259 1.21057 0.92800 0.96730 0.99219 1.21100 1.00089 1.01262 0.95101 1.20922 0.94195 0.98657 0.96806 1.20388 0.93080 1.03335 1.00219 1.21241 0.99267 1.00459 0.93567 0.92158 0.91970 0.90451 0.92466 0.91976 0.92439 0.91561 0.85452 0.85354 0.85589 0.84800 0.85540 0.85936 0.85448 0.85282 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.65 37.16 0.32 -1.76 16 2 C -0.08 -1.27 2.10 -92.92 -0.20 -1.46 16 3 H 0.09 1.43 7.13 -51.93 -0.37 1.06 16 4 C 0.47 10.51 6.90 -10.99 -0.08 10.43 16 5 O -0.56 -14.50 14.96 5.55 0.08 -14.42 16 6 N -0.47 -11.02 2.60 -122.20 -0.32 -11.33 16 7 C 0.06 1.15 7.56 59.85 0.45 1.61 16 8 C -0.32 -8.87 9.39 -14.93 -0.14 -9.01 16 9 H 0.11 3.33 7.89 -52.49 -0.41 2.91 16 10 C 0.06 1.63 5.31 -17.47 -0.09 1.53 16 11 N -0.86 -24.75 13.96 55.50 0.77 -23.97 16 12 Si 0.88 20.37 24.96 -169.99 -4.24 16.12 16 13 H -0.28 -5.88 6.68 56.52 0.38 -5.50 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 C -0.03 -0.55 4.40 -104.65 -0.46 -1.01 16 17 C -0.08 -1.18 7.93 -39.56 -0.31 -1.49 16 18 C -0.11 -1.47 10.04 -39.60 -0.40 -1.87 16 19 C -0.13 -1.72 9.99 -39.43 -0.39 -2.12 16 20 C 0.07 1.07 4.41 -39.20 -0.17 0.89 16 21 O -0.26 -3.79 9.98 -3.55 -0.04 -3.82 16 22 C 0.12 1.71 6.63 -39.20 -0.26 1.45 16 23 C -0.19 -2.76 8.98 -39.43 -0.35 -3.11 16 24 C -0.08 -1.02 10.04 -39.60 -0.40 -1.42 16 25 C -0.16 -1.71 10.04 -39.55 -0.40 -2.11 16 26 C -0.09 -0.90 10.04 -39.61 -0.40 -1.30 16 27 C -0.15 -1.77 9.99 -39.43 -0.39 -2.17 16 28 C -0.13 -1.95 8.55 -39.43 -0.34 -2.28 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.86 7.39 -51.93 -0.38 0.48 16 31 H 0.08 1.02 4.51 -51.93 -0.23 0.79 16 32 H 0.06 0.95 6.85 -51.93 -0.36 0.59 16 33 H 0.06 1.26 3.16 -51.93 -0.16 1.10 16 34 H 0.06 0.90 6.12 -51.93 -0.32 0.58 16 35 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.13 2.05 7.51 -52.48 -0.39 1.65 16 37 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 39 H 0.13 2.17 6.30 -52.49 -0.33 1.84 16 40 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.13 1.81 7.94 -52.48 -0.42 1.39 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -32.31 357.90 -7.85 -40.16 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.50 Total: 7.07 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -4.01 Total: -15.19 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.46 Total: -35.31 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.05 Total: -18.25 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.24 Total: 16.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.31 -7.85 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182734346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.031 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds