Wall clock time and date at job start Tue Mar 31 2020 16:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46954 * 2 1 4 4 C 1.50705 * 109.47198 * 119.99475 * 2 1 3 5 5 O 1.21288 * 119.99537 * 120.00048 * 4 2 1 6 6 N 1.34769 * 120.00076 * 300.00439 * 4 2 1 7 7 C 1.46501 * 120.00209 * 359.97438 * 6 4 2 8 8 C 1.37098 * 120.00142 * 179.97438 * 6 4 2 9 9 H 1.07996 * 119.99984 * 323.63721 * 8 6 4 10 10 C 1.38952 * 119.99802 * 143.63517 * 8 6 4 11 11 N 1.31414 * 119.99986 * 157.93897 * 10 8 6 12 12 Si 1.86803 * 120.00082 * 337.93581 * 10 8 6 13 13 H 1.48499 * 109.46664 * 95.50344 * 12 10 8 14 14 H 1.48505 * 109.47124 * 215.50212 * 12 10 8 15 15 H 1.48496 * 109.47144 * 335.50344 * 12 10 8 16 16 C 1.50701 * 109.47290 * 239.99682 * 2 1 3 17 17 C 1.38290 * 119.97002 * 299.97595 * 16 2 1 18 18 C 1.38252 * 120.11533 * 180.02562 * 17 16 2 19 19 C 1.38160 * 120.05837 * 359.97438 * 18 17 16 20 20 C 1.38732 * 119.93945 * 0.03840 * 19 18 17 21 21 O 1.35891 * 120.05941 * 179.97438 * 20 19 18 22 22 C 1.35888 * 117.99985 * 257.82902 * 21 20 19 23 23 C 1.38753 * 120.05800 * 359.67038 * 22 21 20 24 24 C 1.38140 * 119.94112 * 179.69639 * 23 22 21 25 25 C 1.38278 * 120.05513 * 0.58153 * 24 23 22 26 26 C 1.38272 * 120.11450 * 359.71777 * 25 24 23 27 27 C 1.38131 * 120.06042 * 359.97438 * 26 25 24 28 28 C 1.38118 * 119.97150 * 120.00159 * 16 2 1 29 29 H 1.08998 * 109.47079 * 60.00611 * 1 2 3 30 30 H 1.09000 * 109.46596 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46872 * 300.00326 * 1 2 3 32 32 H 1.08993 * 109.47635 * 88.47117 * 7 6 4 33 33 H 1.08998 * 109.47223 * 208.48024 * 7 6 4 34 34 H 1.09002 * 109.46596 * 328.47261 * 7 6 4 35 35 H 0.96998 * 119.99812 * 180.02562 * 11 10 8 36 36 H 1.08005 * 119.94586 * 0.04753 * 17 16 2 37 37 H 1.07995 * 119.97085 * 180.02562 * 18 17 16 38 38 H 1.07996 * 120.02792 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.03438 * 359.97438 * 23 22 21 40 40 H 1.08000 * 119.97532 * 180.29643 * 24 23 22 41 41 H 1.07993 * 119.93996 * 179.69928 * 25 24 23 42 42 H 1.07995 * 119.96738 * 180.02562 * 26 25 24 43 43 H 1.07998 * 120.03419 * 179.97438 * 27 26 25 44 44 H 1.08003 * 120.02610 * 359.69562 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6964 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 0.8649 0.9416 2.5890 8 6 2.1633 -0.8963 3.5740 9 1 2.2452 -1.9731 3.5801 10 6 2.5207 -0.1660 4.7008 11 7 2.5381 -0.7446 5.8806 12 14 2.9765 1.6383 4.5386 13 1 1.7843 2.4773 4.8216 14 1 4.0535 1.9658 5.5073 15 1 3.4540 1.9061 3.1583 16 6 2.0324 -0.7105 -1.2304 17 6 1.6984 -2.0346 -1.4483 18 6 2.1580 -2.6895 -2.5758 19 6 2.9522 -2.0220 -3.4883 20 6 3.2890 -0.6937 -3.2719 21 8 4.0704 -0.0349 -4.1675 22 6 5.3816 0.1448 -3.8592 23 6 5.8846 -0.3321 -2.6573 24 6 7.2193 -0.1535 -2.3491 25 6 8.0511 0.5104 -3.2320 26 6 7.5508 0.9921 -4.4277 27 6 6.2184 0.8106 -4.7435 28 6 2.8265 -0.0387 -2.1392 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.1843 0.6464 2.5948 33 1 1.1040 1.4521 3.5218 34 1 1.0488 1.6128 1.7500 35 1 2.7873 -0.2347 6.6672 36 1 1.0770 -2.5581 -0.7367 37 1 1.8954 -3.7234 -2.7439 38 1 3.3107 -2.5339 -4.3691 39 1 5.2344 -0.8464 -1.9651 40 1 7.6125 -0.5287 -1.4159 41 1 9.0931 0.6532 -2.9871 42 1 8.2027 1.5099 -5.1157 43 1 5.8280 1.1873 -5.6773 44 1 3.0833 0.9967 -1.9708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182734346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:40 Heat of formation + Delta-G solvation = -8.565741 kcal Electronic energy + Delta-G solvation = -27146.926690 eV Core-core repulsion = 23416.032348 eV Total energy + Delta-G solvation = -3730.894342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.01429 -41.04164 -39.59986 -38.32129 -36.73483 -35.14586 -33.94288 -32.19851 -31.55566 -31.03701 -29.99669 -28.15639 -27.20696 -25.34000 -24.57853 -23.64879 -23.14456 -22.34422 -20.52345 -19.24600 -19.09015 -18.07136 -17.78827 -17.57800 -17.16864 -16.88111 -16.83023 -16.11650 -15.83822 -15.39507 -15.30210 -14.95212 -14.70668 -14.65619 -14.40833 -14.35099 -14.26709 -14.20204 -13.57654 -13.48419 -13.07239 -12.99074 -12.96037 -12.73109 -12.61478 -12.50417 -12.25766 -12.16346 -11.91324 -11.82523 -11.70854 -11.03321 -10.35035 -10.02225 -9.88125 -9.72031 -9.68756 -9.26411 -8.53801 -6.15101 0.07116 0.25875 0.34633 0.40659 1.16860 1.30768 1.42354 1.92710 2.05605 2.15106 2.66078 2.77864 2.81522 2.98306 3.53408 3.76080 3.84054 3.91187 3.95540 4.09661 4.15840 4.19845 4.23970 4.29029 4.33547 4.35333 4.45405 4.48822 4.54994 4.59473 4.67712 4.84639 4.88714 4.92367 4.97770 5.03238 5.22497 5.26824 5.32449 5.37959 5.44733 5.49671 5.55105 5.58431 5.68117 5.94370 6.01851 6.53238 6.54642 6.92026 7.28107 7.85436 8.63667 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.003774 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.635639 B = 7416.441278 C = 8676.748560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 H 0.113 0.887 4 C 0.464 3.536 5 O -0.606 6.606 6 N -0.481 5.481 7 C 0.053 3.947 8 C -0.336 4.336 9 H 0.044 0.956 10 C 0.012 3.988 11 N -0.910 5.910 12 Si 0.952 3.048 13 H -0.236 1.236 14 H -0.291 1.291 15 H -0.262 1.262 16 C -0.050 4.050 17 C -0.094 4.094 18 C -0.105 4.105 19 C -0.126 4.126 20 C 0.069 3.931 21 O -0.265 6.265 22 C 0.103 3.897 23 C -0.212 4.212 24 C -0.097 4.097 25 C -0.153 4.153 26 C -0.079 4.079 27 C -0.152 4.152 28 C -0.132 4.132 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.280 0.720 36 H 0.114 0.886 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.106 0.894 40 H 0.127 0.873 41 H 0.150 0.850 42 H 0.166 0.834 43 H 0.149 0.851 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.978 7.705 -21.485 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 H 0.131 0.869 4 C 0.253 3.747 5 O -0.490 6.490 6 N -0.202 5.202 7 C -0.088 4.088 8 C -0.464 4.464 9 H 0.062 0.938 10 C -0.190 4.190 11 N -0.548 5.548 12 Si 0.775 3.225 13 H -0.161 1.161 14 H -0.219 1.219 15 H -0.186 1.186 16 C -0.051 4.051 17 C -0.112 4.112 18 C -0.123 4.123 19 C -0.145 4.145 20 C 0.027 3.973 21 O -0.177 6.177 22 C 0.061 3.939 23 C -0.231 4.231 24 C -0.115 4.115 25 C -0.171 4.171 26 C -0.096 4.096 27 C -0.171 4.171 28 C -0.151 4.151 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.172 0.828 38 H 0.166 0.834 39 H 0.124 0.876 40 H 0.145 0.855 41 H 0.168 0.832 42 H 0.183 0.817 43 H 0.167 0.833 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.236 7.288 -21.478 22.791 hybrid contribution 0.270 -0.068 1.181 1.214 sum 2.507 7.219 -20.296 21.687 Atomic orbital electron populations 1.22056 0.90109 1.03276 1.04915 1.20297 0.99465 0.99815 0.88982 0.86918 1.21034 0.81974 0.86653 0.85015 1.90539 1.41887 1.29743 1.86785 1.43732 1.44910 1.27214 1.04384 1.22454 0.96025 0.87906 1.02457 1.18665 1.45432 0.91808 0.90492 0.93773 1.26140 0.94962 1.04146 0.93765 1.69872 1.45311 1.40524 0.99082 0.85809 0.79025 0.78957 0.78694 1.16075 1.21866 1.18574 1.19326 0.97012 0.94580 0.94188 1.21132 0.99314 0.93999 0.96757 1.21256 0.97031 1.00949 0.93017 1.21404 0.99948 0.92123 1.00978 1.18588 0.95882 0.91791 0.90994 1.84320 1.17870 1.71982 1.43570 1.19480 0.82602 0.97363 0.94481 1.21384 0.97958 1.06143 0.97609 1.21231 0.92561 0.97621 1.00092 1.21457 1.01102 0.99834 0.94739 1.21388 0.93966 0.97434 0.96857 1.20756 0.93464 1.02420 1.00441 1.21292 0.99108 1.00855 0.93810 0.88996 0.92856 0.89542 0.89964 0.92967 0.88426 0.91016 0.86751 0.82787 0.83442 0.87590 0.85464 0.83196 0.81673 0.83282 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 8.65 71.98 0.62 -3.08 16 2 C -0.06 -2.10 2.10 -12.28 -0.03 -2.12 16 3 H 0.11 3.20 7.13 -2.39 -0.02 3.18 16 4 C 0.46 21.28 6.90 87.66 0.60 21.89 16 5 O -0.61 -33.45 14.96 -3.05 -0.05 -33.49 16 6 N -0.48 -22.95 2.60 -658.91 -1.71 -24.66 16 7 C 0.05 1.89 7.56 127.77 0.97 2.86 16 8 C -0.34 -19.80 9.39 84.04 0.79 -19.01 16 9 H 0.04 3.06 7.89 -2.91 -0.02 3.03 16 10 C 0.01 0.68 5.31 84.93 0.45 1.13 16 11 N -0.91 -54.25 13.96 21.66 0.30 -53.95 16 12 Si 0.95 41.73 24.96 68.60 1.71 43.44 16 13 H -0.24 -8.87 6.68 99.48 0.66 -8.21 16 14 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 16 C -0.05 -1.64 4.40 -19.88 -0.09 -1.73 16 17 C -0.09 -3.02 7.93 22.29 0.18 -2.84 16 18 C -0.10 -2.81 10.04 22.25 0.22 -2.59 16 19 C -0.13 -3.33 9.99 22.37 0.22 -3.11 16 20 C 0.07 2.01 4.41 22.52 0.10 2.11 16 21 O -0.26 -7.49 9.98 -35.63 -0.36 -7.85 16 22 C 0.10 2.78 6.63 22.52 0.15 2.93 16 23 C -0.21 -6.24 8.98 22.37 0.20 -6.04 16 24 C -0.10 -2.44 10.04 22.26 0.22 -2.21 16 25 C -0.15 -2.93 10.04 22.29 0.22 -2.71 16 26 C -0.08 -1.33 10.04 22.25 0.22 -1.11 16 27 C -0.15 -3.17 9.99 22.37 0.22 -2.94 16 28 C -0.13 -4.02 8.55 22.37 0.19 -3.83 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.44 7.39 -2.39 -0.02 1.42 16 31 H 0.09 2.01 4.51 -2.39 -0.01 2.00 16 32 H 0.08 2.50 6.85 -2.39 -0.02 2.48 16 33 H 0.05 1.96 3.16 -2.39 -0.01 1.96 16 34 H 0.10 2.66 6.12 -2.39 -0.01 2.65 16 35 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.11 3.89 7.51 -2.91 -0.02 3.87 16 37 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 38 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 39 H 0.11 3.65 6.30 -2.91 -0.02 3.63 16 40 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 41 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 42 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 43 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 44 H 0.13 3.70 7.94 -2.91 -0.02 3.68 16 Total: -1.00 -76.72 357.90 6.36 -70.36 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.98 Total: 28.55 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 5.48 Total: -22.39 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -1.41 Total: -78.61 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.40 Total: -41.34 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.71 Total: 43.44 kcal Total: -76.72 6.36 -70.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182734346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.793 kcal (2) G-P(sol) polarization free energy of solvation -76.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds