Wall clock time and date at job start Tue Mar 31 2020 16:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46982 * 2 1 4 4 C 1.50707 * 109.47183 * 240.00546 * 2 1 3 5 5 O 1.21294 * 119.99213 * 263.81231 * 4 2 1 6 6 N 1.34770 * 120.00042 * 83.81047 * 4 2 1 7 7 C 1.37092 * 120.00321 * 4.68011 * 6 4 2 8 8 H 1.08004 * 120.00019 * 39.14823 * 7 6 4 9 9 C 1.38952 * 120.00535 * 219.14384 * 7 6 4 10 10 N 1.31414 * 119.99506 * 22.22876 * 9 7 6 11 11 Si 1.86798 * 120.00141 * 202.23169 * 9 7 6 12 12 H 1.48495 * 109.47108 * 59.99999 * 11 9 7 13 13 H 1.48505 * 109.46560 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47130 * 299.99544 * 11 9 7 15 15 C 1.46501 * 119.99600 * 184.68473 * 6 4 2 16 16 C 1.50708 * 109.46904 * 269.99831 * 15 6 4 17 17 C 1.38231 * 119.99959 * 90.00373 * 16 15 6 18 18 C 1.38228 * 120.00005 * 179.97438 * 17 16 15 19 19 C 1.38238 * 120.00271 * 0.09275 * 18 17 16 20 20 C 1.38233 * 119.99485 * 359.86322 * 19 18 17 21 21 C 1.38229 * 119.99961 * 269.97690 * 16 15 6 22 22 C 1.50698 * 109.47281 * 120.00092 * 2 1 3 23 23 C 1.38262 * 119.94220 * 59.72898 * 22 2 1 24 24 C 1.38150 * 120.05539 * 179.72621 * 23 22 2 25 25 C 1.38728 * 119.94172 * 0.54725 * 24 23 22 26 26 O 1.35901 * 120.05682 * 179.74810 * 25 24 23 27 27 C 1.38737 * 119.89053 * 359.72593 * 25 24 23 28 28 C 1.38145 * 119.94265 * 0.02562 * 27 25 24 29 29 H 1.09003 * 109.47054 * 63.14124 * 1 2 3 30 30 H 1.09000 * 109.46925 * 183.14321 * 1 2 3 31 31 H 1.08998 * 109.47399 * 303.13964 * 1 2 3 32 32 H 0.97001 * 119.99913 * 174.97013 * 10 9 7 33 33 H 1.09000 * 109.47277 * 150.00271 * 15 6 4 34 34 H 1.09003 * 109.47407 * 29.99975 * 15 6 4 35 35 H 1.08004 * 119.99904 * 359.69511 * 17 16 15 36 36 H 1.08003 * 120.00179 * 179.97438 * 18 17 16 37 37 H 1.07996 * 120.00041 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99805 * 180.02562 * 20 19 18 39 39 H 1.08003 * 119.99904 * 0.02562 * 21 16 15 40 40 H 1.08003 * 119.97614 * 359.97438 * 23 22 2 41 41 H 1.07999 * 120.03032 * 180.27386 * 24 23 22 42 42 H 0.96699 * 113.99925 * 269.97754 * 26 25 24 43 43 H 1.08000 * 120.02694 * 179.97438 * 27 25 24 44 44 H 1.07996 * 119.97706 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.3412 -1.8818 -1.1709 6 7 2.1383 -0.0440 -2.3972 7 6 1.8813 1.3018 -2.4438 8 1 2.2037 1.9415 -1.6354 9 6 1.2062 1.8431 -3.5310 10 7 0.4441 1.0770 -4.2788 11 14 1.3818 3.6596 -3.9294 12 1 2.8080 3.9710 -4.2016 13 1 0.5672 3.9844 -5.1279 14 1 0.9101 4.4673 -2.7760 15 6 2.5281 -0.7579 -3.6157 16 6 4.0286 -0.7321 -3.7547 17 6 4.7918 -1.7404 -3.1968 18 6 6.1680 -1.7170 -3.3248 19 6 6.7811 -0.6842 -4.0092 20 6 6.0177 0.3237 -4.5679 21 6 4.6414 0.2997 -4.4407 22 6 2.0323 -0.7104 1.2304 23 6 1.6930 -2.0325 1.4509 24 6 2.1569 -2.6877 2.5752 25 6 2.9545 -2.0146 3.4891 26 8 3.4079 -2.6554 4.5985 27 6 3.2889 -0.6863 3.2685 28 6 2.8267 -0.0372 2.1401 29 1 -0.3633 0.4643 -0.9168 30 1 -0.3633 -1.0261 0.0563 31 1 -0.3634 0.5618 0.8605 32 1 -0.0841 1.4673 -4.9926 33 1 2.0747 -0.2743 -4.4809 34 1 2.1864 -1.7913 -3.5564 35 1 4.3133 -2.5442 -2.6570 36 1 6.7644 -2.5047 -2.8885 37 1 7.8563 -0.6658 -4.1088 38 1 6.4966 1.1304 -5.1029 39 1 4.0450 1.0876 -4.8767 40 1 1.0680 -2.5547 0.7415 41 1 1.8952 -3.7217 2.7447 42 1 2.8180 -2.5858 5.3616 43 1 3.9094 -0.1601 3.9788 44 1 3.0871 0.9966 1.9676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184281545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:06 Heat of formation + Delta-G solvation = -27.222481 kcal Electronic energy + Delta-G solvation = -27584.569320 eV Core-core repulsion = 23852.865961 eV Total energy + Delta-G solvation = -3731.703359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.79693 -38.96293 -38.08822 -36.55113 -34.83016 -32.93625 -31.90331 -30.69947 -30.56135 -30.25887 -28.11086 -25.96221 -24.83966 -23.48230 -22.42712 -21.89433 -21.43336 -20.35756 -19.02315 -18.19373 -17.06027 -16.42649 -15.93213 -15.48701 -15.12723 -15.00504 -14.70218 -14.50926 -14.25731 -14.10593 -13.69864 -13.48267 -13.17524 -12.94193 -12.78813 -12.62130 -12.13541 -11.98440 -11.81759 -11.65601 -11.62087 -11.36012 -11.29899 -10.97169 -10.88943 -10.76399 -10.50439 -10.42314 -10.31756 -10.17166 -10.05689 -9.20859 -8.69889 -8.45782 -8.30776 -8.16553 -7.96625 -7.55891 -6.47562 -4.14929 1.54887 1.72140 1.96201 2.02146 3.05713 3.15278 3.17801 3.84230 3.93005 4.06274 4.34219 4.41792 4.85461 4.88476 5.22610 5.25703 5.32289 5.44377 5.49356 5.59714 5.73203 5.83623 5.87687 5.94678 5.99227 6.04022 6.12282 6.19664 6.24044 6.34870 6.39965 6.54812 6.57102 6.62888 6.63530 6.71578 6.76749 6.90750 7.05234 7.06199 7.11864 7.13188 7.15639 7.38146 7.46443 7.64326 7.80593 7.86934 8.27865 9.00631 9.43732 9.87568 10.55344 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010551 B = 0.004782 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.251242 B = 5854.276111 C = 7468.160417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.056 4.056 3 H 0.095 0.905 4 C 0.484 3.516 5 O -0.595 6.595 6 N -0.429 5.429 7 C -0.340 4.340 8 H 0.087 0.913 9 C 0.052 3.948 10 N -0.856 5.856 11 Si 0.906 3.094 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.271 1.271 15 C 0.150 3.850 16 C -0.078 4.078 17 C -0.102 4.102 18 C -0.133 4.133 19 C -0.134 4.134 20 C -0.133 4.133 21 C -0.097 4.097 22 C -0.062 4.062 23 C -0.060 4.060 24 C -0.151 4.151 25 C 0.087 3.913 26 O -0.503 6.503 27 C -0.152 4.152 28 C -0.103 4.103 29 H 0.078 0.922 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.272 0.728 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.382 0.618 43 H 0.121 0.879 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.810 -0.805 7.038 7.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.077 4.077 3 H 0.113 0.887 4 C 0.273 3.727 5 O -0.481 6.481 6 N -0.146 5.146 7 C -0.468 4.468 8 H 0.104 0.896 9 C -0.156 4.156 10 N -0.492 5.492 11 Si 0.732 3.268 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.196 1.196 15 C 0.027 3.973 16 C -0.079 4.079 17 C -0.120 4.120 18 C -0.151 4.151 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.116 4.116 22 C -0.063 4.063 23 C -0.078 4.078 24 C -0.170 4.170 25 C 0.043 3.957 26 O -0.312 6.312 27 C -0.171 4.171 28 C -0.121 4.121 29 H 0.097 0.903 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.143 0.857 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.148 0.852 41 H 0.140 0.860 42 H 0.237 0.763 43 H 0.139 0.861 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.331 -1.512 6.447 7.413 hybrid contribution -0.173 1.239 0.057 1.252 sum 3.158 -0.273 6.503 7.235 Atomic orbital electron populations 1.21573 0.92569 1.01543 1.02697 1.20022 0.97396 0.99891 0.90440 0.88691 1.20194 0.80756 0.86367 0.85430 1.90510 1.54924 1.16950 1.85681 1.43282 1.57763 1.08103 1.05470 1.19269 1.37496 0.82100 1.07952 0.89571 1.25325 0.94037 0.99276 0.96927 1.69870 1.22652 1.36342 1.20298 0.86332 0.78810 0.83262 0.78403 1.19633 1.20855 1.19638 1.20358 0.87912 0.97405 0.91663 1.20601 0.97795 0.93795 0.95712 1.21277 0.93407 0.99116 0.98217 1.21054 0.94967 0.98708 1.00350 1.20961 0.98920 0.95509 0.99878 1.21038 0.94207 0.98715 1.01146 1.21102 0.94153 0.97791 0.98562 1.19779 0.96925 0.94434 0.95153 1.20962 0.98135 0.93783 0.94952 1.21360 0.99295 1.00242 0.96093 1.18433 0.97341 0.90757 0.89128 1.84832 1.49464 1.75639 1.21276 1.21230 1.02447 0.93945 0.99463 1.20944 0.97404 0.99899 0.93831 0.90282 0.93125 0.93027 0.91761 0.87456 0.91829 0.85713 0.87052 0.87173 0.86995 0.86288 0.85175 0.86048 0.76313 0.86080 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.02 37.16 0.33 -1.91 16 2 C -0.06 -1.09 2.24 -92.92 -0.21 -1.30 16 3 H 0.09 1.82 6.18 -51.93 -0.32 1.50 16 4 C 0.48 11.05 6.73 -10.98 -0.07 10.97 16 5 O -0.60 -14.50 13.42 5.55 0.07 -14.42 16 6 N -0.43 -10.08 2.49 -116.09 -0.29 -10.37 16 7 C -0.34 -7.98 8.23 -14.93 -0.12 -8.11 16 8 H 0.09 1.98 6.63 -52.48 -0.35 1.63 16 9 C 0.05 1.20 4.92 -17.47 -0.09 1.11 16 10 N -0.86 -20.93 11.63 55.50 0.65 -20.29 16 11 Si 0.91 18.32 29.61 -169.99 -5.03 13.29 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 13 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 15 C 0.15 3.44 5.10 -5.19 -0.03 3.41 16 16 C -0.08 -1.64 5.46 -104.62 -0.57 -2.21 16 17 C -0.10 -2.04 9.58 -39.59 -0.38 -2.41 16 18 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 19 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 20 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 21 C -0.10 -1.91 9.70 -39.59 -0.38 -2.30 16 22 C -0.06 -1.12 4.63 -104.60 -0.48 -1.60 16 23 C -0.06 -1.06 7.84 -39.60 -0.31 -1.37 16 24 C -0.15 -2.38 9.99 -39.43 -0.39 -2.77 16 25 C 0.09 1.31 6.70 -39.22 -0.26 1.05 16 26 O -0.50 -6.48 13.50 -19.43 -0.26 -6.74 16 27 C -0.15 -2.25 9.99 -39.43 -0.39 -2.65 16 28 C -0.10 -1.64 9.66 -39.60 -0.38 -2.03 16 29 H 0.08 1.57 7.89 -51.93 -0.41 1.16 16 30 H 0.05 0.88 7.26 -51.93 -0.38 0.50 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.27 6.36 8.32 -40.82 -0.34 6.02 16 33 H 0.11 2.58 5.62 -51.93 -0.29 2.29 16 34 H 0.06 1.50 7.44 -51.93 -0.39 1.11 16 35 H 0.12 2.62 7.38 -52.48 -0.39 2.23 16 36 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 40 H 0.13 2.38 6.89 -52.48 -0.36 2.02 16 41 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.38 2.88 9.06 45.56 0.41 3.29 16 43 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.12 1.76 7.94 -52.49 -0.42 1.34 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -28.07 369.00 -9.22 -37.30 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -4.98 Total: 15.73 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -4.94 Total: -20.06 kcal Atomic # 7 Polarization: -31.01 SS G_CDS: 0.36 Total: -30.65 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.19 Total: -21.17 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.07 -9.22 -37.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184281545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.075 kcal (2) G-P(sol) polarization free energy of solvation -28.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds