Wall clock time and date at job start Tue Mar 31 2020 16:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46982 * 2 1 4 4 C 1.50707 * 109.47183 * 240.00546 * 2 1 3 5 5 O 1.21294 * 119.99213 * 263.81231 * 4 2 1 6 6 N 1.34770 * 120.00042 * 83.81047 * 4 2 1 7 7 C 1.37092 * 120.00321 * 4.68011 * 6 4 2 8 8 H 1.08004 * 120.00019 * 39.14823 * 7 6 4 9 9 C 1.38952 * 120.00535 * 219.14384 * 7 6 4 10 10 N 1.31414 * 119.99506 * 22.22876 * 9 7 6 11 11 Si 1.86798 * 120.00141 * 202.23169 * 9 7 6 12 12 H 1.48495 * 109.47108 * 59.99999 * 11 9 7 13 13 H 1.48505 * 109.46560 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47130 * 299.99544 * 11 9 7 15 15 C 1.46501 * 119.99600 * 184.68473 * 6 4 2 16 16 C 1.50708 * 109.46904 * 269.99831 * 15 6 4 17 17 C 1.38231 * 119.99959 * 90.00373 * 16 15 6 18 18 C 1.38228 * 120.00005 * 179.97438 * 17 16 15 19 19 C 1.38238 * 120.00271 * 0.09275 * 18 17 16 20 20 C 1.38233 * 119.99485 * 359.86322 * 19 18 17 21 21 C 1.38229 * 119.99961 * 269.97690 * 16 15 6 22 22 C 1.50698 * 109.47281 * 120.00092 * 2 1 3 23 23 C 1.38262 * 119.94220 * 59.72898 * 22 2 1 24 24 C 1.38150 * 120.05539 * 179.72621 * 23 22 2 25 25 C 1.38728 * 119.94172 * 0.54725 * 24 23 22 26 26 O 1.35901 * 120.05682 * 179.74810 * 25 24 23 27 27 C 1.38737 * 119.89053 * 359.72593 * 25 24 23 28 28 C 1.38145 * 119.94265 * 0.02562 * 27 25 24 29 29 H 1.09003 * 109.47054 * 63.14124 * 1 2 3 30 30 H 1.09000 * 109.46925 * 183.14321 * 1 2 3 31 31 H 1.08998 * 109.47399 * 303.13964 * 1 2 3 32 32 H 0.97001 * 119.99913 * 174.97013 * 10 9 7 33 33 H 1.09000 * 109.47277 * 150.00271 * 15 6 4 34 34 H 1.09003 * 109.47407 * 29.99975 * 15 6 4 35 35 H 1.08004 * 119.99904 * 359.69511 * 17 16 15 36 36 H 1.08003 * 120.00179 * 179.97438 * 18 17 16 37 37 H 1.07996 * 120.00041 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99805 * 180.02562 * 20 19 18 39 39 H 1.08003 * 119.99904 * 0.02562 * 21 16 15 40 40 H 1.08003 * 119.97614 * 359.97438 * 23 22 2 41 41 H 1.07999 * 120.03032 * 180.27386 * 24 23 22 42 42 H 0.96699 * 113.99925 * 269.97754 * 26 25 24 43 43 H 1.08000 * 120.02694 * 179.97438 * 27 25 24 44 44 H 1.07996 * 119.97706 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 8 2.3412 -1.8818 -1.1709 6 7 2.1383 -0.0440 -2.3972 7 6 1.8813 1.3018 -2.4438 8 1 2.2037 1.9415 -1.6354 9 6 1.2062 1.8431 -3.5310 10 7 0.4441 1.0770 -4.2788 11 14 1.3818 3.6596 -3.9294 12 1 2.8080 3.9710 -4.2016 13 1 0.5672 3.9844 -5.1279 14 1 0.9101 4.4673 -2.7760 15 6 2.5281 -0.7579 -3.6157 16 6 4.0286 -0.7321 -3.7547 17 6 4.7918 -1.7404 -3.1968 18 6 6.1680 -1.7170 -3.3248 19 6 6.7811 -0.6842 -4.0092 20 6 6.0177 0.3237 -4.5679 21 6 4.6414 0.2997 -4.4407 22 6 2.0323 -0.7104 1.2304 23 6 1.6930 -2.0325 1.4509 24 6 2.1569 -2.6877 2.5752 25 6 2.9545 -2.0146 3.4891 26 8 3.4079 -2.6554 4.5985 27 6 3.2889 -0.6863 3.2685 28 6 2.8267 -0.0372 2.1401 29 1 -0.3633 0.4643 -0.9168 30 1 -0.3633 -1.0261 0.0563 31 1 -0.3634 0.5618 0.8605 32 1 -0.0841 1.4673 -4.9926 33 1 2.0747 -0.2743 -4.4809 34 1 2.1864 -1.7913 -3.5564 35 1 4.3133 -2.5442 -2.6570 36 1 6.7644 -2.5047 -2.8885 37 1 7.8563 -0.6658 -4.1088 38 1 6.4966 1.1304 -5.1029 39 1 4.0450 1.0876 -4.8767 40 1 1.0680 -2.5547 0.7415 41 1 1.8952 -3.7217 2.7447 42 1 2.8180 -2.5858 5.3616 43 1 3.9094 -0.1601 3.9788 44 1 3.0871 0.9966 1.9676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184281545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:05 Heat of formation + Delta-G solvation = -41.261561 kcal Electronic energy + Delta-G solvation = -27585.178100 eV Core-core repulsion = 23852.865961 eV Total energy + Delta-G solvation = -3732.312139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.25584 -40.38751 -39.55586 -37.79236 -36.59838 -34.39348 -33.67257 -32.19054 -31.87098 -31.70223 -29.41346 -27.65720 -26.60580 -24.94163 -23.66695 -23.34559 -22.81742 -21.84366 -20.76484 -19.29153 -18.69708 -18.04185 -17.39466 -16.96087 -16.48405 -16.45126 -16.18571 -16.02635 -15.74185 -15.62454 -15.31301 -14.78692 -14.67558 -14.29204 -14.21898 -14.05163 -13.66995 -13.50864 -13.25153 -13.08099 -13.01120 -12.99175 -12.81140 -12.60414 -12.53628 -12.26471 -12.09704 -11.91151 -11.81535 -11.68667 -11.32064 -10.99250 -10.28797 -9.82750 -9.75654 -9.57300 -9.41409 -9.32058 -8.28056 -6.01147 0.31686 0.48631 0.51667 0.56586 1.43348 1.50332 1.56738 2.09281 2.33147 2.68735 2.87181 3.07728 3.26921 3.36493 3.87637 3.98733 4.04077 4.12132 4.13322 4.22112 4.34781 4.36446 4.45036 4.47296 4.57018 4.59936 4.69268 4.73090 4.84608 4.98785 5.01383 5.08340 5.14173 5.17108 5.21705 5.27766 5.29951 5.45508 5.50437 5.54216 5.63684 5.65136 5.81466 5.89884 5.96639 6.07020 6.20616 6.44024 6.91266 7.17954 7.63626 8.07873 8.75662 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010551 B = 0.004782 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.251242 B = 5854.276111 C = 7468.160417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 H 0.095 0.905 4 C 0.470 3.530 5 O -0.619 6.619 6 N -0.438 5.438 7 C -0.349 4.349 8 H 0.091 0.909 9 C 0.018 3.982 10 N -0.887 5.887 11 Si 0.966 3.034 12 H -0.268 1.268 13 H -0.285 1.285 14 H -0.262 1.262 15 C 0.157 3.843 16 C -0.098 4.098 17 C -0.121 4.121 18 C -0.130 4.130 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.114 4.114 22 C -0.084 4.084 23 C -0.074 4.074 24 C -0.159 4.159 25 C 0.097 3.903 26 O -0.507 6.507 27 C -0.150 4.150 28 C -0.105 4.105 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.272 0.728 33 H 0.091 0.909 34 H 0.038 0.962 35 H 0.102 0.898 36 H 0.138 0.862 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.136 0.864 42 H 0.409 0.591 43 H 0.149 0.851 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.350 0.608 8.606 10.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.070 4.070 3 H 0.114 0.886 4 C 0.260 3.740 5 O -0.506 6.506 6 N -0.155 5.155 7 C -0.476 4.476 8 H 0.108 0.892 9 C -0.186 4.186 10 N -0.524 5.524 11 Si 0.790 3.210 12 H -0.193 1.193 13 H -0.211 1.211 14 H -0.187 1.187 15 C 0.033 3.967 16 C -0.100 4.100 17 C -0.140 4.140 18 C -0.148 4.148 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.132 4.132 22 C -0.085 4.085 23 C -0.093 4.093 24 C -0.177 4.177 25 C 0.053 3.947 26 O -0.320 6.320 27 C -0.168 4.168 28 C -0.123 4.123 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.121 0.879 36 H 0.156 0.844 37 H 0.171 0.829 38 H 0.163 0.837 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.154 0.846 42 H 0.268 0.732 43 H 0.167 0.833 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.860 -0.098 8.043 9.952 hybrid contribution -0.908 0.686 -0.367 1.196 sum 4.952 0.588 7.676 9.153 Atomic orbital electron populations 1.21480 0.91816 1.01498 1.02566 1.19944 0.97956 0.99480 0.89586 0.88645 1.20906 0.80316 0.86422 0.86364 1.90478 1.55826 1.18053 1.86252 1.43489 1.57893 1.08374 1.05741 1.19468 1.37614 0.82134 1.08424 0.89176 1.26002 0.93334 1.02834 0.96420 1.69976 1.23531 1.38040 1.20820 0.85399 0.78628 0.78798 0.78171 1.19315 1.21057 1.18664 1.20142 0.89837 0.95553 0.91148 1.20430 0.96441 0.95377 0.97717 1.21183 0.94961 0.98651 0.99184 1.21370 0.93711 0.99828 0.99890 1.21422 1.00982 0.93924 0.97731 1.21406 0.92896 0.99699 1.00393 1.21109 0.95693 0.97282 0.99149 1.19718 0.98727 0.94790 0.95261 1.20859 0.98851 0.93984 0.95586 1.21512 0.99501 1.01005 0.95678 1.18480 0.96008 0.90766 0.89482 1.84765 1.50282 1.75315 1.21620 1.21511 1.02066 0.93948 0.99280 1.21136 0.96713 1.00693 0.93743 0.92889 0.93517 0.90050 0.91791 0.89149 0.94330 0.87947 0.84394 0.82888 0.83677 0.87331 0.87223 0.84635 0.73234 0.83304 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 9.02 71.98 0.65 -3.61 16 2 C -0.05 -1.93 2.24 -12.28 -0.03 -1.96 16 3 H 0.10 3.71 6.18 -2.39 -0.01 3.69 16 4 C 0.47 22.62 6.73 87.66 0.59 23.21 16 5 O -0.62 -32.11 13.42 -3.07 -0.04 -32.15 16 6 N -0.44 -21.68 2.49 -639.58 -1.59 -23.28 16 7 C -0.35 -16.87 8.23 84.04 0.69 -16.18 16 8 H 0.09 4.20 6.63 -2.91 -0.02 4.18 16 9 C 0.02 0.88 4.92 84.93 0.42 1.29 16 10 N -0.89 -45.23 11.63 21.66 0.25 -44.98 16 11 Si 0.97 37.71 29.61 68.60 2.03 39.75 16 12 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 13 H -0.29 -11.14 7.11 99.48 0.71 -10.44 16 14 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 15 C 0.16 7.71 5.10 85.64 0.44 8.15 16 16 C -0.10 -4.31 5.46 -19.87 -0.11 -4.42 16 17 C -0.12 -4.98 9.58 22.27 0.21 -4.77 16 18 C -0.13 -4.30 10.05 22.27 0.22 -4.08 16 19 C -0.12 -3.54 10.05 22.27 0.22 -3.32 16 20 C -0.13 -3.98 10.05 22.27 0.22 -3.75 16 21 C -0.11 -4.47 9.70 22.27 0.22 -4.25 16 22 C -0.08 -3.04 4.63 -19.85 -0.09 -3.14 16 23 C -0.07 -2.67 7.84 22.25 0.17 -2.50 16 24 C -0.16 -4.86 9.99 22.37 0.22 -4.64 16 25 C 0.10 2.68 6.70 22.51 0.15 2.83 16 26 O -0.51 -11.44 13.50 -92.43 -1.25 -12.69 16 27 C -0.15 -4.03 9.99 22.37 0.22 -3.81 16 28 C -0.10 -3.20 9.66 22.25 0.22 -2.99 16 29 H 0.05 2.19 7.89 -2.39 -0.02 2.18 16 30 H 0.05 1.71 7.26 -2.39 -0.02 1.69 16 31 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.27 13.21 8.32 -92.71 -0.77 12.43 16 33 H 0.09 4.69 5.62 -2.39 -0.01 4.68 16 34 H 0.04 2.00 7.44 -2.39 -0.02 1.99 16 35 H 0.10 4.59 7.38 -2.91 -0.02 4.57 16 36 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 37 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 38 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 40 H 0.11 4.29 6.89 -2.91 -0.02 4.27 16 41 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 42 H 0.41 4.67 9.06 -74.06 -0.67 4.00 16 43 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 44 H 0.14 3.70 7.94 -2.91 -0.02 3.67 16 Total: -1.00 -63.41 369.00 4.40 -59.01 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: 0.35 Total: 42.26 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 4.64 Total: -27.92 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -1.34 Total: -68.25 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -1.29 Total: -44.84 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.75 kcal Total: -63.41 4.40 -59.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184281545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.746 kcal (2) G-P(sol) polarization free energy of solvation -63.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds