Wall clock time and date at job start Tue Mar 31 2020 14:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47116 * 2 1 4 4 N 1.46499 * 109.46821 * 180.02562 * 3 2 1 5 5 C 1.46506 * 119.99609 * 274.99375 * 4 3 2 6 6 C 1.50698 * 109.47151 * 275.00363 * 5 4 3 7 7 H 1.07999 * 120.00158 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99573 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00153 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99620 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47204 * 60.00023 * 10 8 6 12 12 H 1.48497 * 109.46947 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46942 * 299.99927 * 10 8 6 14 14 S 1.65600 * 120.00283 * 94.99992 * 4 3 2 15 15 O 1.42098 * 106.40358 * 156.45991 * 14 4 3 16 16 O 1.42102 * 106.40034 * 23.53714 * 14 4 3 17 17 C 1.76197 * 107.21614 * 269.99784 * 14 4 3 18 18 C 1.38261 * 120.00213 * 269.97839 * 17 14 4 19 19 C 1.38213 * 120.00210 * 180.02562 * 18 17 14 20 20 C 1.38255 * 119.99934 * 359.81206 * 19 18 17 21 21 C 1.38215 * 119.99903 * 0.43958 * 20 19 18 22 22 C 1.50697 * 119.99688 * 179.79032 * 21 20 19 23 23 C 1.52997 * 109.47466 * 59.72715 * 22 21 20 24 24 C 1.53006 * 109.47239 * 299.72426 * 22 21 20 25 25 C 1.38213 * 120.00296 * 89.99724 * 17 14 4 26 26 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47242 * 300.00556 * 1 2 3 28 28 H 1.09002 * 109.46968 * 60.00383 * 1 2 3 29 29 H 1.08999 * 109.46897 * 239.99861 * 2 1 3 30 30 H 1.09002 * 109.46605 * 120.00017 * 2 1 3 31 31 H 1.08998 * 109.47040 * 59.99428 * 3 2 1 32 32 H 1.09002 * 109.46889 * 299.99665 * 3 2 1 33 33 H 1.09004 * 109.46783 * 35.00554 * 5 4 3 34 34 H 1.08997 * 109.46680 * 155.00274 * 5 4 3 35 35 H 0.96993 * 120.00068 * 179.97438 * 9 8 6 36 36 H 1.08005 * 119.99410 * 359.97438 * 18 17 14 37 37 H 1.07997 * 119.99548 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99961 * 180.22894 * 20 19 18 39 39 H 1.08998 * 109.46862 * 179.73270 * 22 21 20 40 40 H 1.09002 * 109.47153 * 59.99773 * 23 22 21 41 41 H 1.09001 * 109.46832 * 299.99964 * 23 22 21 42 42 H 1.09004 * 109.47261 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47002 * 60.00070 * 24 22 21 44 44 H 1.08993 * 109.46955 * 180.02562 * 24 22 21 45 45 H 1.09000 * 109.47050 * 300.00336 * 24 22 21 46 46 H 1.07998 * 119.99815 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2380 1.3318 1.2631 6 6 4.3822 2.6984 1.8815 7 1 3.9695 3.5630 1.3830 8 6 5.0418 2.8450 3.0834 9 7 5.5456 1.7924 3.6897 10 14 5.2211 4.5392 3.8497 11 1 3.8751 5.1110 4.1071 12 1 5.9651 4.4271 5.1300 13 1 5.9664 5.4262 2.9207 14 16 4.3325 1.5676 -1.4296 15 8 5.6156 2.0857 -1.1063 16 8 3.4505 2.1948 -2.3504 17 6 4.5930 -0.0696 -2.0265 18 6 5.7326 -0.7641 -1.6651 19 6 5.9372 -2.0481 -2.1337 20 6 5.0004 -2.6396 -2.9608 21 6 3.8637 -1.9434 -3.3264 22 6 2.8450 -2.5864 -4.2317 23 6 2.3093 -3.8596 -3.5738 24 6 3.5012 -2.9401 -5.5679 25 6 3.6584 -0.6595 -2.8564 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.6908 0.6804 1.9446 34 1 5.2262 0.9123 1.0743 35 1 6.0100 1.8956 4.5350 36 1 6.4633 -0.3028 -1.0171 37 1 6.8275 -2.5904 -1.8517 38 1 5.1585 -3.6443 -3.3241 39 1 2.0223 -1.8924 -4.4035 40 1 1.8418 -3.6076 -2.6219 41 1 3.1321 -4.5536 -3.4020 42 1 1.5721 -4.3244 -4.2285 43 1 4.3240 -3.6341 -5.3962 44 1 2.7642 -3.4047 -6.2228 45 1 3.8828 -2.0330 -6.0366 46 1 2.7681 -0.1171 -3.1387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195140470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:57 Heat of formation + Delta-G solvation = -71.448094 kcal Electronic energy + Delta-G solvation = -26681.544829 eV Core-core repulsion = 23083.367655 eV Total energy + Delta-G solvation = -3598.177174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.57669 -36.70483 -36.33487 -35.52608 -35.15013 -33.14911 -31.78775 -31.14841 -29.86638 -27.38955 -27.35862 -25.03378 -23.73057 -22.80155 -22.51149 -21.12659 -20.48873 -18.11629 -17.36265 -16.81413 -16.39902 -15.91967 -15.72980 -15.36241 -14.72018 -14.43618 -14.34672 -13.97395 -13.80606 -13.69106 -13.58846 -13.32547 -12.71675 -12.46803 -12.34115 -12.23487 -12.12477 -12.02763 -11.79600 -11.59588 -11.40608 -11.37743 -11.30796 -11.16963 -11.11567 -10.95715 -10.84166 -10.78160 -10.49629 -10.30442 -10.25356 -9.95278 -9.72672 -9.20529 -8.76627 -8.42659 -8.04529 -6.05005 -4.08829 0.84549 1.14243 1.35344 3.35197 3.38693 3.41845 3.44957 3.81560 4.36180 4.42595 4.47599 4.61826 4.87766 4.98312 4.98801 5.02247 5.21401 5.26878 5.30496 5.33960 5.35669 5.39073 5.43736 5.51848 5.59345 5.63919 5.73471 5.76928 5.81228 6.00122 6.01916 6.03098 6.04941 6.11289 6.20470 6.25731 6.30250 6.33474 6.45157 6.63385 6.67727 6.91693 7.24052 7.40279 7.61048 7.92388 8.21415 8.93237 9.56162 11.03543 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.004088 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.011575 B = 6847.809888 C = 7369.447244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.121 3.879 4 N -0.980 5.980 5 C 0.257 3.743 6 C -0.528 4.528 7 H 0.061 0.939 8 C 0.063 3.937 9 N -0.896 5.896 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.274 1.274 14 S 2.683 3.317 15 O -0.943 6.943 16 O -0.977 6.977 17 C -0.667 4.667 18 C -0.019 4.019 19 C -0.140 4.140 20 C -0.068 4.068 21 C -0.104 4.104 22 C -0.057 4.057 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.021 4.021 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.264 0.736 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 -12.119 -13.543 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C -0.006 4.006 4 N -0.819 5.819 5 C 0.135 3.865 6 C -0.568 4.568 7 H 0.079 0.921 8 C -0.139 4.139 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.200 1.200 14 S 2.771 3.229 15 O -0.933 6.933 16 O -0.967 6.967 17 C -0.751 4.751 18 C -0.038 4.038 19 C -0.158 4.158 20 C -0.087 4.087 21 C -0.105 4.105 22 C -0.075 4.075 23 C -0.202 4.202 24 C -0.202 4.202 25 C -0.040 4.040 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.159 0.841 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.002 -11.432 -13.770 18.876 hybrid contribution 0.235 -0.003 0.625 0.667 sum -5.767 -11.434 -13.145 18.352 Atomic orbital electron populations 1.21688 0.95679 1.01269 1.01914 1.22048 0.95746 0.98495 1.02420 1.21290 0.79648 0.95794 1.03818 1.57409 1.13875 1.88376 1.22209 1.19084 0.90994 0.97699 0.78687 1.21452 1.36157 0.93623 1.05560 0.92106 1.24912 0.95094 0.97038 0.96848 1.69904 1.37239 1.29061 1.17302 0.86589 0.78311 0.84374 0.78386 1.20172 1.21216 1.19959 1.02275 0.73784 0.74005 0.72834 1.93600 1.40099 1.76242 1.83336 1.93488 1.66489 1.73415 1.63351 1.31493 1.03468 1.27575 1.12611 1.21032 0.94495 0.93683 0.94616 1.21262 0.99901 0.95632 0.99035 1.21185 0.93009 0.99123 0.95338 1.19920 0.96439 0.94575 0.99554 1.20132 0.96143 0.97389 0.93881 1.21867 1.00936 0.96543 1.00812 1.21869 1.00620 1.01685 0.96008 1.20776 0.96900 0.93838 0.92461 0.93052 0.92419 0.92785 0.92612 0.91148 0.89385 0.90370 0.94484 0.94413 0.92656 0.84061 0.85290 0.85831 0.90139 0.92285 0.92539 0.92348 0.92535 0.92319 0.92403 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.37 16 2 C -0.15 -2.15 6.26 -26.73 -0.17 -2.31 16 3 C 0.12 2.09 5.68 -4.04 -0.02 2.07 16 4 N -0.98 -20.22 2.77 -115.66 -0.32 -20.54 16 5 C 0.26 6.33 5.10 -5.19 -0.03 6.31 16 6 C -0.53 -14.65 9.38 -34.44 -0.32 -14.97 16 7 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.90 -25.85 13.29 55.43 0.74 -25.12 16 10 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 S 2.68 54.41 5.65 -107.50 -0.61 53.80 16 15 O -0.94 -22.53 16.25 -57.17 -0.93 -23.46 16 16 O -0.98 -20.24 15.84 -57.17 -0.91 -21.15 16 17 C -0.67 -11.24 5.97 -39.58 -0.24 -11.48 16 18 C -0.02 -0.31 9.52 -39.58 -0.38 -0.68 16 19 C -0.14 -1.80 10.05 -39.58 -0.40 -2.20 16 20 C -0.07 -0.79 8.71 -39.58 -0.34 -1.14 16 21 C -0.10 -1.27 4.78 -104.63 -0.50 -1.77 16 22 C -0.06 -0.54 3.09 -91.77 -0.28 -0.82 16 23 C -0.14 -1.19 9.00 37.16 0.33 -0.85 16 24 C -0.14 -1.17 9.01 37.16 0.33 -0.84 16 25 C -0.02 -0.30 8.05 -39.58 -0.32 -0.62 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.77 7.01 -51.93 -0.36 0.41 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.56 8.11 -51.93 -0.42 1.14 16 32 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 33 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 34 H 0.04 0.98 7.61 -51.93 -0.40 0.59 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.14 2.32 7.62 -52.48 -0.40 1.92 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.12 1.09 7.10 -52.49 -0.37 0.72 16 39 H 0.08 0.74 7.88 -51.93 -0.41 0.33 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.44 7.37 -51.93 -0.38 0.05 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.43 7.40 -51.93 -0.38 0.04 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.13 1.82 7.51 -52.49 -0.39 1.43 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -32.38 386.57 -10.93 -43.31 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.65 Total: -0.35 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: -2.06 Total: -28.99 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.42 Total: -45.66 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -1.83 Total: -44.61 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 54.41 SS G_CDS: -0.61 Total: 53.80 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.38 -10.93 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195140470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.141 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds