Wall clock time and date at job start Tue Mar 31 2020 14:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47116 * 2 1 4 4 N 1.46499 * 109.46821 * 180.02562 * 3 2 1 5 5 C 1.46506 * 119.99609 * 274.99375 * 4 3 2 6 6 C 1.50698 * 109.47151 * 275.00363 * 5 4 3 7 7 H 1.07999 * 120.00158 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99573 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00153 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99620 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47204 * 60.00023 * 10 8 6 12 12 H 1.48497 * 109.46947 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46942 * 299.99927 * 10 8 6 14 14 S 1.65600 * 120.00283 * 94.99992 * 4 3 2 15 15 O 1.42098 * 106.40358 * 156.45991 * 14 4 3 16 16 O 1.42102 * 106.40034 * 23.53714 * 14 4 3 17 17 C 1.76197 * 107.21614 * 269.99784 * 14 4 3 18 18 C 1.38261 * 120.00213 * 269.97839 * 17 14 4 19 19 C 1.38213 * 120.00210 * 180.02562 * 18 17 14 20 20 C 1.38255 * 119.99934 * 359.81206 * 19 18 17 21 21 C 1.38215 * 119.99903 * 0.43958 * 20 19 18 22 22 C 1.50697 * 119.99688 * 179.79032 * 21 20 19 23 23 C 1.52997 * 109.47466 * 59.72715 * 22 21 20 24 24 C 1.53006 * 109.47239 * 299.72426 * 22 21 20 25 25 C 1.38213 * 120.00296 * 89.99724 * 17 14 4 26 26 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47242 * 300.00556 * 1 2 3 28 28 H 1.09002 * 109.46968 * 60.00383 * 1 2 3 29 29 H 1.08999 * 109.46897 * 239.99861 * 2 1 3 30 30 H 1.09002 * 109.46605 * 120.00017 * 2 1 3 31 31 H 1.08998 * 109.47040 * 59.99428 * 3 2 1 32 32 H 1.09002 * 109.46889 * 299.99665 * 3 2 1 33 33 H 1.09004 * 109.46783 * 35.00554 * 5 4 3 34 34 H 1.08997 * 109.46680 * 155.00274 * 5 4 3 35 35 H 0.96993 * 120.00068 * 179.97438 * 9 8 6 36 36 H 1.08005 * 119.99410 * 359.97438 * 18 17 14 37 37 H 1.07997 * 119.99548 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99961 * 180.22894 * 20 19 18 39 39 H 1.08998 * 109.46862 * 179.73270 * 22 21 20 40 40 H 1.09002 * 109.47153 * 59.99773 * 23 22 21 41 41 H 1.09001 * 109.46832 * 299.99964 * 23 22 21 42 42 H 1.09004 * 109.47261 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47002 * 60.00070 * 24 22 21 44 44 H 1.08993 * 109.46955 * 180.02562 * 24 22 21 45 45 H 1.09000 * 109.47050 * 300.00336 * 24 22 21 46 46 H 1.07998 * 119.99815 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2380 1.3318 1.2631 6 6 4.3822 2.6984 1.8815 7 1 3.9695 3.5630 1.3830 8 6 5.0418 2.8450 3.0834 9 7 5.5456 1.7924 3.6897 10 14 5.2211 4.5392 3.8497 11 1 3.8751 5.1110 4.1071 12 1 5.9651 4.4271 5.1300 13 1 5.9664 5.4262 2.9207 14 16 4.3325 1.5676 -1.4296 15 8 5.6156 2.0857 -1.1063 16 8 3.4505 2.1948 -2.3504 17 6 4.5930 -0.0696 -2.0265 18 6 5.7326 -0.7641 -1.6651 19 6 5.9372 -2.0481 -2.1337 20 6 5.0004 -2.6396 -2.9608 21 6 3.8637 -1.9434 -3.3264 22 6 2.8450 -2.5864 -4.2317 23 6 2.3093 -3.8596 -3.5738 24 6 3.5012 -2.9401 -5.5679 25 6 3.6584 -0.6595 -2.8564 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.6908 0.6804 1.9446 34 1 5.2262 0.9123 1.0743 35 1 6.0100 1.8956 4.5350 36 1 6.4633 -0.3028 -1.0171 37 1 6.8275 -2.5904 -1.8517 38 1 5.1585 -3.6443 -3.3241 39 1 2.0223 -1.8924 -4.4035 40 1 1.8418 -3.6076 -2.6219 41 1 3.1321 -4.5536 -3.4020 42 1 1.5721 -4.3244 -4.2285 43 1 4.3240 -3.6341 -5.3962 44 1 2.7642 -3.4047 -6.2228 45 1 3.8828 -2.0330 -6.0366 46 1 2.7681 -0.1171 -3.1387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195140470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:56 Heat of formation + Delta-G solvation = -90.364789 kcal Electronic energy + Delta-G solvation = -26682.365119 eV Core-core repulsion = 23083.367655 eV Total energy + Delta-G solvation = -3598.997464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.60723 -38.36632 -37.94587 -36.89138 -36.35477 -34.99577 -33.40530 -32.25917 -30.85637 -29.25258 -27.94675 -26.57077 -24.78605 -24.36644 -23.86349 -22.37765 -21.50217 -19.67517 -18.77885 -18.40265 -18.28535 -17.37881 -16.99240 -16.69686 -16.26090 -15.69828 -15.62584 -15.25535 -14.83748 -14.73291 -14.65739 -14.62178 -14.21749 -13.85576 -13.52725 -13.35943 -13.32023 -13.21171 -13.12180 -13.03658 -12.94691 -12.94001 -12.81540 -12.50256 -12.37899 -12.19694 -12.12713 -12.04078 -12.01223 -11.68712 -11.63240 -11.49153 -11.40637 -10.59033 -10.32646 -9.82850 -9.76508 -8.19801 -6.31576 -0.58528 -0.17204 0.27449 1.39284 1.43072 1.50009 2.03531 2.41433 2.53136 2.83667 3.11056 3.28393 3.65843 3.81613 3.92499 3.97685 4.10357 4.16481 4.23654 4.30868 4.32752 4.42224 4.47383 4.49533 4.71323 4.79989 4.85195 4.89044 4.91983 4.97536 5.02442 5.03253 5.11049 5.15800 5.19088 5.23697 5.25502 5.27523 5.35248 5.42774 5.46087 5.52148 5.54233 5.70819 5.87181 5.92295 6.10607 6.75841 7.36864 8.87710 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.004088 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.011575 B = 6847.809888 C = 7369.447244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.113 3.887 4 N -0.986 5.986 5 C 0.274 3.726 6 C -0.550 4.550 7 H 0.053 0.947 8 C 0.015 3.985 9 N -0.923 5.923 10 Si 0.955 3.045 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.278 1.278 14 S 2.685 3.315 15 O -0.991 6.991 16 O -0.988 6.988 17 C -0.673 4.673 18 C -0.047 4.047 19 C -0.135 4.135 20 C -0.056 4.056 21 C -0.097 4.097 22 C -0.057 4.057 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.032 4.032 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.029 0.971 34 H 0.016 0.984 35 H 0.268 0.732 36 H 0.123 0.877 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 -14.344 -14.988 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.180 4.180 3 C -0.012 4.012 4 N -0.824 5.824 5 C 0.151 3.849 6 C -0.589 4.589 7 H 0.071 0.929 8 C -0.185 4.185 9 N -0.563 5.563 10 Si 0.780 3.220 11 H -0.188 1.188 12 H -0.201 1.201 13 H -0.203 1.203 14 S 2.780 3.220 15 O -0.982 6.982 16 O -0.979 6.979 17 C -0.763 4.763 18 C -0.066 4.066 19 C -0.154 4.154 20 C -0.074 4.074 21 C -0.098 4.098 22 C -0.076 4.076 23 C -0.200 4.200 24 C -0.201 4.201 25 C -0.052 4.052 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.175 0.825 38 H 0.181 0.819 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.226 -13.600 -15.200 21.638 hybrid contribution 0.598 0.567 0.953 1.260 sum -6.628 -13.033 -14.247 20.415 Atomic orbital electron populations 1.21673 0.93125 1.02730 1.02549 1.21975 0.97854 0.96086 1.02104 1.21532 0.77813 0.98070 1.03788 1.57262 1.15154 1.89056 1.20964 1.18608 0.90271 0.96024 0.79981 1.21797 1.36384 0.94646 1.06112 0.92922 1.25715 0.94721 1.00736 0.97337 1.69997 1.37700 1.30877 1.17702 0.85660 0.78841 0.79879 0.77666 1.18787 1.20059 1.20324 1.01686 0.72616 0.75222 0.72496 1.93531 1.42155 1.78484 1.84025 1.93454 1.66432 1.74851 1.63153 1.30740 1.05299 1.25415 1.14831 1.21069 0.94299 0.95453 0.95823 1.21587 1.01217 0.94179 0.98370 1.21650 0.91726 1.00463 0.93581 1.20317 0.97215 0.93422 0.98819 1.20228 0.95457 0.97909 0.93996 1.21867 1.01623 0.95907 1.00592 1.21876 1.01346 1.01603 0.95258 1.20952 0.96633 0.95142 0.92430 0.91156 0.92411 0.91584 0.91844 0.92547 0.90318 0.89412 0.95277 0.96599 0.92353 0.85939 0.82472 0.81924 0.89987 0.93222 0.91672 0.90642 0.91559 0.90606 0.93392 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.91 71.98 0.71 -2.41 16 2 C -0.14 -4.06 6.26 30.60 0.19 -3.87 16 3 C 0.11 4.03 5.68 86.38 0.49 4.52 16 4 N -0.99 -42.74 2.77 -519.83 -1.44 -44.18 16 5 C 0.27 14.28 5.10 85.63 0.44 14.72 16 6 C -0.55 -31.73 9.38 25.60 0.24 -31.49 16 7 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 8 C 0.01 0.83 5.46 84.66 0.46 1.30 16 9 N -0.92 -54.58 13.29 21.45 0.28 -54.30 16 10 Si 0.95 45.13 29.54 68.60 2.03 47.15 16 11 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 14 S 2.69 114.58 5.65 -56.49 -0.32 114.26 16 15 O -0.99 -50.71 16.25 -128.00 -2.08 -52.79 16 16 O -0.99 -42.28 15.84 -128.00 -2.03 -44.31 16 17 C -0.67 -23.19 5.97 22.27 0.13 -23.06 16 18 C -0.05 -1.53 9.52 22.27 0.21 -1.32 16 19 C -0.13 -3.24 10.05 22.27 0.22 -3.01 16 20 C -0.06 -1.11 8.71 22.27 0.19 -0.92 16 21 C -0.10 -2.11 4.78 -19.87 -0.09 -2.20 16 22 C -0.06 -0.88 3.09 -11.54 -0.04 -0.92 16 23 C -0.14 -1.78 9.00 71.98 0.65 -1.13 16 24 C -0.14 -1.79 9.01 71.98 0.65 -1.14 16 25 C -0.03 -0.91 8.05 22.27 0.18 -0.73 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.71 7.01 -2.39 -0.02 1.70 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 2.90 8.11 -2.39 -0.02 2.88 16 32 H 0.09 2.92 6.91 -2.39 -0.02 2.90 16 33 H 0.03 1.54 8.11 -2.38 -0.02 1.52 16 34 H 0.02 0.89 7.61 -2.39 -0.02 0.87 16 35 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.12 4.36 7.62 -2.91 -0.02 4.34 16 37 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.16 1.99 7.10 -2.91 -0.02 1.97 16 39 H 0.08 1.26 7.88 -2.39 -0.02 1.24 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.71 7.37 -2.39 -0.02 0.69 16 42 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.07 0.70 7.40 -2.39 -0.02 0.68 16 44 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.14 3.70 7.51 -2.91 -0.02 3.67 16 Total: -1.00 -72.52 386.57 2.03 -70.49 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.94 Total: 15.35 kcal Atomic # 6 Polarization: -56.30 SS G_CDS: 4.64 Total: -51.66 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -1.15 Total: -98.48 kcal Atomic # 8 Polarization: -93.00 SS G_CDS: -4.11 Total: -97.11 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 114.58 SS G_CDS: -0.32 Total: 114.26 kcal Total: -72.52 2.03 -70.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195140470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.871 kcal (2) G-P(sol) polarization free energy of solvation -72.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds