Wall clock time and date at job start Tue Mar 31 2020 16:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36011 * 116.99580 * 2 1 4 4 C 1.38704 * 120.02528 * 0.22874 * 3 2 1 5 5 C 1.38767 * 120.53850 * 180.27917 * 4 3 2 6 6 C 1.36493 * 120.58462 * 359.74732 * 5 4 3 7 7 C 1.40777 * 120.01579 * 359.97438 * 6 5 4 8 8 C 1.41181 * 120.25949 * 180.02562 * 7 6 5 9 9 H 1.08006 * 119.99686 * 206.02280 * 8 7 6 10 10 C 1.39914 * 120.00242 * 26.01947 * 8 7 6 11 11 N 1.30872 * 120.00268 * 14.98481 * 10 8 7 12 12 Si 1.86801 * 120.00099 * 194.97911 * 10 8 7 13 13 H 1.48496 * 109.47272 * 90.00231 * 12 10 8 14 14 H 1.48506 * 109.47416 * 210.00326 * 12 10 8 15 15 H 1.48507 * 109.47036 * 330.00190 * 12 10 8 16 16 C 1.38884 * 120.01708 * 180.02562 * 3 2 1 17 17 O 1.35736 * 120.28494 * 0.02562 * 16 3 2 18 18 C 1.42899 * 117.00230 * 269.72081 * 17 16 3 19 19 H 1.09005 * 110.86952 * 327.97341 * 18 17 16 20 20 C 1.54420 * 110.81141 * 91.45311 * 18 17 16 21 21 C 1.51054 * 105.14789 * 92.09702 * 20 18 17 22 22 C 1.38627 * 131.51918 * 197.06154 * 21 20 18 23 23 C 1.38213 * 119.09922 * 179.97438 * 22 21 20 24 24 N 1.31889 * 120.70783 * 359.80118 * 23 22 21 25 25 C 1.31831 * 121.78970 * 0.44321 * 24 23 22 26 26 C 1.38346 * 120.75299 * 359.53073 * 25 24 23 27 27 C 1.51179 * 131.26867 * 180.22392 * 26 25 24 28 28 H 1.08996 * 110.30095 * 281.87739 * 27 26 25 29 29 C 1.53004 * 110.29846 * 44.01203 * 27 26 25 30 30 H 1.09008 * 109.46648 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47045 * 299.99860 * 1 2 3 32 32 H 1.09000 * 109.47081 * 60.00424 * 1 2 3 33 33 H 1.07998 * 119.73032 * 0.05059 * 4 3 2 34 34 H 1.07999 * 119.71394 * 179.77037 * 5 4 3 35 35 H 1.07997 * 119.99157 * 179.97438 * 6 5 4 36 36 H 0.97003 * 120.00057 * 179.97438 * 11 10 8 37 37 H 1.09005 * 110.30445 * 333.18777 * 20 18 17 38 38 H 1.08995 * 110.31206 * 211.01838 * 20 18 17 39 39 H 1.07997 * 120.44862 * 359.95880 * 22 21 20 40 40 H 1.07992 * 119.64446 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.62151 * 179.80954 * 25 24 23 42 42 H 1.09001 * 109.46985 * 58.54590 * 29 27 26 43 43 H 1.08999 * 109.47126 * 178.54233 * 29 27 26 44 44 H 1.08998 * 109.47546 * 298.54567 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2914 2.3755 0.0048 5 6 1.9101 3.6175 -0.0010 6 6 3.2716 3.7152 -0.0063 7 6 4.0612 2.5497 -0.0054 8 6 5.4698 2.6447 -0.0103 9 1 6.0638 1.8412 -0.4202 10 6 6.0963 3.7798 0.5157 11 7 5.4205 4.6110 1.2676 12 14 7.8973 4.1088 0.1451 13 1 8.0073 4.9258 -1.0901 14 1 8.5103 4.8437 1.2808 15 1 8.6063 2.8186 -0.0500 16 6 3.4333 1.2851 -0.0005 17 8 4.1786 0.1507 -0.0016 18 6 4.5406 -0.3889 1.2711 19 1 4.6697 0.4048 2.0070 20 6 3.4915 -1.4158 1.7501 21 6 3.9921 -2.7520 1.2546 22 6 3.3538 -3.9730 1.1010 23 6 4.0710 -5.0500 0.6154 24 7 5.3446 -4.9227 0.2971 25 6 5.9838 -3.7780 0.4348 26 6 5.3309 -2.6564 0.9143 27 6 5.8194 -1.2469 1.1596 28 1 6.3883 -1.2001 2.0881 29 6 6.6774 -0.7706 -0.0143 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2131 2.3143 0.0093 34 1 1.3093 4.5149 -0.0009 35 1 3.7431 4.6868 -0.0112 36 1 5.8550 5.3977 1.6326 37 1 2.5172 -1.1920 1.3154 38 1 3.4303 -1.4146 2.8383 39 1 2.3103 -4.0812 1.3576 40 1 3.5826 -6.0054 0.4926 41 1 7.0278 -3.7139 0.1662 42 1 6.0917 -0.8121 -0.9327 43 1 7.0006 0.2549 0.1645 44 1 7.5509 -1.4153 -0.1110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225842176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:08 Heat of formation + Delta-G solvation = -22.286709 kcal Electronic energy + Delta-G solvation = -28255.034353 eV Core-core repulsion = 24523.545025 eV Total energy + Delta-G solvation = -3731.489328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.58064 -39.12957 -37.55069 -36.38178 -34.70534 -33.53029 -32.30047 -29.63887 -29.59094 -28.93376 -28.26132 -26.50990 -25.14878 -24.48572 -22.92435 -21.51540 -20.96092 -20.71689 -19.60608 -17.96525 -16.88981 -16.29500 -15.98061 -15.89780 -15.44135 -15.09537 -14.95497 -14.78413 -14.22163 -14.03848 -13.76491 -13.50255 -13.31799 -13.16576 -12.73141 -12.56055 -12.33877 -12.10076 -11.73868 -11.57593 -11.50775 -11.32123 -11.25720 -11.10349 -10.72044 -10.54456 -10.48148 -10.40260 -10.15732 -9.99031 -9.59379 -9.28462 -9.27796 -9.13342 -8.69678 -8.62625 -7.49705 -7.00390 -6.82645 -4.51379 1.36412 1.54650 2.56488 2.82427 3.00529 3.03736 3.12164 3.81230 4.02407 4.12765 4.42184 4.58826 4.61667 4.77502 4.87140 5.24182 5.28985 5.40832 5.53939 5.55581 5.59487 5.65304 5.72935 5.80933 5.84553 5.94030 5.96808 6.08720 6.12259 6.18086 6.31293 6.36445 6.44343 6.54510 6.59521 6.74964 6.77316 6.86365 6.93129 6.96043 7.07506 7.16970 7.55447 7.66766 7.84375 7.97060 8.17957 8.32340 8.36020 8.64700 8.72765 9.12286 10.01595 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011288 B = 0.005484 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.891579 B = 5104.835522 C = 7258.777727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.319 6.319 3 C 0.135 3.865 4 C -0.318 4.318 5 C -0.077 4.077 6 C -0.177 4.177 7 C 0.128 3.872 8 C -0.438 4.438 9 H 0.092 0.908 10 C 0.074 3.926 11 N -0.786 5.786 12 Si 0.908 3.092 13 H -0.266 1.266 14 H -0.277 1.277 15 H -0.258 1.258 16 C -0.065 4.065 17 O -0.288 6.288 18 C 0.098 3.902 19 H 0.077 0.923 20 C -0.121 4.121 21 C -0.034 4.034 22 C -0.164 4.164 23 C 0.086 3.914 24 N -0.492 5.492 25 C 0.108 3.892 26 C -0.132 4.132 27 C -0.043 4.043 28 H 0.090 0.910 29 C -0.135 4.135 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.283 0.717 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 -8.142 1.887 8.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.234 6.234 3 C 0.090 3.910 4 C -0.338 4.338 5 C -0.096 4.096 6 C -0.197 4.197 7 C 0.124 3.876 8 C -0.466 4.466 9 H 0.110 0.890 10 C -0.145 4.145 11 N -0.411 5.411 12 Si 0.732 3.268 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.182 1.182 16 C -0.111 4.111 17 O -0.204 6.204 18 C 0.041 3.959 19 H 0.095 0.905 20 C -0.158 4.158 21 C -0.042 4.042 22 C -0.184 4.184 23 C -0.071 4.071 24 N -0.200 5.200 25 C -0.049 4.049 26 C -0.134 4.134 27 C -0.062 4.062 28 H 0.108 0.892 29 C -0.192 4.192 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.141 0.859 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.570 -8.941 1.552 9.210 hybrid contribution -0.283 1.246 0.549 1.390 sum -1.852 -7.696 2.101 8.189 Atomic orbital electron populations 1.22798 0.80909 1.01893 1.00691 1.86036 1.19317 1.28492 1.89507 1.19174 0.91355 0.83113 0.97315 1.20296 0.97288 0.92300 1.23896 1.20237 0.95087 0.95107 0.99175 1.20993 0.91976 0.99096 1.07598 1.17623 0.93726 0.89040 0.87177 1.19667 0.91604 1.02328 1.33046 0.88976 1.25997 1.00921 0.94892 0.92649 1.69842 1.38495 1.10707 1.22006 0.86293 0.81611 0.79847 0.79041 1.19109 1.20240 1.18159 1.17873 0.84884 0.86291 1.22043 1.86116 1.69909 1.39299 1.25108 1.22794 0.90959 0.93756 0.88389 0.90537 1.21909 1.02941 0.90661 1.00276 1.20923 0.94337 0.95005 0.93930 1.21585 1.01145 0.92916 1.02720 1.22551 0.90306 0.98284 0.95946 1.67661 1.10129 1.25894 1.16352 1.22124 0.99806 0.87169 0.95787 1.21637 0.95556 0.96800 0.99447 1.20720 0.96534 0.88916 1.00031 0.89216 1.21633 0.97860 1.01418 0.98252 0.89898 0.93632 0.93549 0.88529 0.89106 0.85935 0.90644 0.87517 0.90112 0.85445 0.83144 0.83345 0.91311 0.91031 0.93819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.81 101.05 0.99 1.48 16 2 O -0.32 -6.34 7.71 -34.32 -0.26 -6.61 16 3 C 0.13 3.02 6.68 -39.17 -0.26 2.76 16 4 C -0.32 -6.86 9.05 -39.21 -0.35 -7.22 16 5 C -0.08 -1.73 9.96 -40.02 -0.40 -2.13 16 6 C -0.18 -4.35 8.62 -39.25 -0.34 -4.69 16 7 C 0.13 3.21 5.58 -106.70 -0.59 2.61 16 8 C -0.44 -10.72 8.72 -37.84 -0.33 -11.05 16 9 H 0.09 2.21 5.78 -52.48 -0.30 1.91 16 10 C 0.07 1.72 5.19 -17.33 -0.09 1.63 16 11 N -0.79 -18.80 10.89 55.55 0.60 -18.19 16 12 Si 0.91 17.53 29.58 -169.99 -5.03 12.50 16 13 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 14 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 15 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 16 C -0.07 -1.56 5.68 -38.22 -0.22 -1.78 16 17 O -0.29 -6.44 7.32 -33.46 -0.24 -6.68 16 18 C 0.10 1.87 3.41 -25.26 -0.09 1.79 16 19 H 0.08 1.56 7.99 -51.93 -0.41 1.15 16 20 C -0.12 -2.06 6.51 -26.97 -0.18 -2.23 16 21 C -0.03 -0.55 6.20 -104.22 -0.65 -1.20 16 22 C -0.16 -2.32 10.12 -39.45 -0.40 -2.72 16 23 C 0.09 1.18 11.19 -17.54 -0.20 0.98 16 24 N -0.49 -7.64 10.36 -13.22 -0.14 -7.77 16 25 C 0.11 1.64 10.97 -17.51 -0.19 1.45 16 26 C -0.13 -2.14 5.62 -104.26 -0.59 -2.73 16 27 C -0.04 -0.71 3.43 -90.80 -0.31 -1.02 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 C -0.13 -2.25 8.41 37.16 0.31 -1.94 16 30 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.05 0.64 7.65 -51.93 -0.40 0.24 16 32 H 0.05 0.67 7.67 -51.93 -0.40 0.27 16 33 H 0.10 1.83 6.27 -52.49 -0.33 1.50 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 36 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 37 H 0.11 1.96 5.32 -51.93 -0.28 1.68 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.15 1.94 7.96 -52.49 -0.42 1.52 16 42 H 0.07 1.28 7.35 -51.93 -0.38 0.90 16 43 H 0.07 1.29 6.47 -51.93 -0.34 0.95 16 44 H 0.04 0.61 8.03 -51.93 -0.42 0.19 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -27.46 355.86 -9.25 -36.71 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.67 Total: 10.69 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -3.88 Total: -26.00 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.47 Total: -25.96 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.51 Total: -13.29 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.46 -9.25 -36.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.419 kcal (2) G-P(sol) polarization free energy of solvation -27.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds