Wall clock time and date at job start Tue Mar 31 2020 16:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36011 * 116.99580 * 2 1 4 4 C 1.38704 * 120.02528 * 0.22874 * 3 2 1 5 5 C 1.38767 * 120.53850 * 180.27917 * 4 3 2 6 6 C 1.36493 * 120.58462 * 359.74732 * 5 4 3 7 7 C 1.40777 * 120.01579 * 359.97438 * 6 5 4 8 8 C 1.41181 * 120.25949 * 180.02562 * 7 6 5 9 9 H 1.08006 * 119.99686 * 206.02280 * 8 7 6 10 10 C 1.39914 * 120.00242 * 26.01947 * 8 7 6 11 11 N 1.30872 * 120.00268 * 14.98481 * 10 8 7 12 12 Si 1.86801 * 120.00099 * 194.97911 * 10 8 7 13 13 H 1.48496 * 109.47272 * 90.00231 * 12 10 8 14 14 H 1.48506 * 109.47416 * 210.00326 * 12 10 8 15 15 H 1.48507 * 109.47036 * 330.00190 * 12 10 8 16 16 C 1.38884 * 120.01708 * 180.02562 * 3 2 1 17 17 O 1.35736 * 120.28494 * 0.02562 * 16 3 2 18 18 C 1.42899 * 117.00230 * 269.72081 * 17 16 3 19 19 H 1.09005 * 110.86952 * 327.97341 * 18 17 16 20 20 C 1.54420 * 110.81141 * 91.45311 * 18 17 16 21 21 C 1.51054 * 105.14789 * 92.09702 * 20 18 17 22 22 C 1.38627 * 131.51918 * 197.06154 * 21 20 18 23 23 C 1.38213 * 119.09922 * 179.97438 * 22 21 20 24 24 N 1.31889 * 120.70783 * 359.80118 * 23 22 21 25 25 C 1.31831 * 121.78970 * 0.44321 * 24 23 22 26 26 C 1.38346 * 120.75299 * 359.53073 * 25 24 23 27 27 C 1.51179 * 131.26867 * 180.22392 * 26 25 24 28 28 H 1.08996 * 110.30095 * 281.87739 * 27 26 25 29 29 C 1.53004 * 110.29846 * 44.01203 * 27 26 25 30 30 H 1.09008 * 109.46648 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47045 * 299.99860 * 1 2 3 32 32 H 1.09000 * 109.47081 * 60.00424 * 1 2 3 33 33 H 1.07998 * 119.73032 * 0.05059 * 4 3 2 34 34 H 1.07999 * 119.71394 * 179.77037 * 5 4 3 35 35 H 1.07997 * 119.99157 * 179.97438 * 6 5 4 36 36 H 0.97003 * 120.00057 * 179.97438 * 11 10 8 37 37 H 1.09005 * 110.30445 * 333.18777 * 20 18 17 38 38 H 1.08995 * 110.31206 * 211.01838 * 20 18 17 39 39 H 1.07997 * 120.44862 * 359.95880 * 22 21 20 40 40 H 1.07992 * 119.64446 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.62151 * 179.80954 * 25 24 23 42 42 H 1.09001 * 109.46985 * 58.54590 * 29 27 26 43 43 H 1.08999 * 109.47126 * 178.54233 * 29 27 26 44 44 H 1.08998 * 109.47546 * 298.54567 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2914 2.3755 0.0048 5 6 1.9101 3.6175 -0.0010 6 6 3.2716 3.7152 -0.0063 7 6 4.0612 2.5497 -0.0054 8 6 5.4698 2.6447 -0.0103 9 1 6.0638 1.8412 -0.4202 10 6 6.0963 3.7798 0.5157 11 7 5.4205 4.6110 1.2676 12 14 7.8973 4.1088 0.1451 13 1 8.0073 4.9258 -1.0901 14 1 8.5103 4.8437 1.2808 15 1 8.6063 2.8186 -0.0500 16 6 3.4333 1.2851 -0.0005 17 8 4.1786 0.1507 -0.0016 18 6 4.5406 -0.3889 1.2711 19 1 4.6697 0.4048 2.0070 20 6 3.4915 -1.4158 1.7501 21 6 3.9921 -2.7520 1.2546 22 6 3.3538 -3.9730 1.1010 23 6 4.0710 -5.0500 0.6154 24 7 5.3446 -4.9227 0.2971 25 6 5.9838 -3.7780 0.4348 26 6 5.3309 -2.6564 0.9143 27 6 5.8194 -1.2469 1.1596 28 1 6.3883 -1.2001 2.0881 29 6 6.6774 -0.7706 -0.0143 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2131 2.3143 0.0093 34 1 1.3093 4.5149 -0.0009 35 1 3.7431 4.6868 -0.0112 36 1 5.8550 5.3977 1.6326 37 1 2.5172 -1.1920 1.3154 38 1 3.4303 -1.4146 2.8383 39 1 2.3103 -4.0812 1.3576 40 1 3.5826 -6.0054 0.4926 41 1 7.0278 -3.7139 0.1662 42 1 6.0917 -0.8121 -0.9327 43 1 7.0006 0.2549 0.1645 44 1 7.5509 -1.4153 -0.1110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225842176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:06 Heat of formation + Delta-G solvation = -34.733826 kcal Electronic energy + Delta-G solvation = -28255.574100 eV Core-core repulsion = 24523.545025 eV Total energy + Delta-G solvation = -3732.029075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.83771 -40.71011 -39.01174 -37.97763 -36.21778 -35.27848 -33.51969 -31.35024 -30.85068 -30.41769 -29.71579 -27.98566 -26.85673 -25.79382 -24.20248 -22.90804 -22.65748 -22.20478 -21.02938 -19.64446 -18.45246 -17.67604 -17.55124 -17.26923 -16.91156 -16.52342 -16.40272 -16.22724 -15.52719 -15.46082 -15.16807 -15.03972 -14.72193 -14.56993 -14.21698 -13.99357 -13.68486 -13.52719 -13.19464 -13.12197 -13.00304 -12.80525 -12.74562 -12.47513 -12.29445 -12.14787 -11.98518 -11.77343 -11.67566 -11.57486 -11.26424 -11.01318 -10.50014 -10.38307 -10.21693 -9.80761 -9.29081 -8.74015 -8.56098 -6.35040 0.24011 0.35948 0.82688 1.07384 1.40053 1.51484 1.52852 2.19750 2.64925 2.70595 2.88679 3.08232 3.42044 3.44277 3.70091 3.78432 3.96764 4.05936 4.26900 4.30698 4.34542 4.46827 4.48926 4.52579 4.53789 4.59934 4.66765 4.69823 4.75584 4.81655 4.96077 5.02540 5.02895 5.07866 5.10171 5.17504 5.20159 5.29514 5.44618 5.53680 5.57161 5.78995 5.82122 5.94002 6.06726 6.15463 6.53983 6.68526 6.84805 6.93133 7.05439 7.39866 8.29475 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011288 B = 0.005484 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.891579 B = 5104.835522 C = 7258.777727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.330 6.330 3 C 0.130 3.870 4 C -0.316 4.316 5 C -0.080 4.080 6 C -0.204 4.204 7 C 0.100 3.900 8 C -0.463 4.463 9 H 0.086 0.914 10 C 0.040 3.960 11 N -0.815 5.815 12 Si 0.972 3.028 13 H -0.264 1.264 14 H -0.268 1.268 15 H -0.254 1.254 16 C -0.081 4.081 17 O -0.302 6.302 18 C 0.092 3.908 19 H 0.051 0.949 20 C -0.113 4.113 21 C -0.052 4.052 22 C -0.162 4.162 23 C 0.088 3.912 24 N -0.506 5.506 25 C 0.103 3.897 26 C -0.145 4.145 27 C -0.039 4.039 28 H 0.106 0.894 29 C -0.126 4.126 30 H 0.116 0.884 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.289 0.711 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.153 0.847 40 H 0.187 0.813 41 H 0.167 0.833 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 -10.096 2.066 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.244 6.244 3 C 0.085 3.915 4 C -0.336 4.336 5 C -0.098 4.098 6 C -0.224 4.224 7 C 0.096 3.904 8 C -0.491 4.491 9 H 0.104 0.896 10 C -0.176 4.176 11 N -0.440 5.440 12 Si 0.792 3.208 13 H -0.189 1.189 14 H -0.192 1.192 15 H -0.177 1.177 16 C -0.127 4.127 17 O -0.218 6.218 18 C 0.035 3.965 19 H 0.069 0.931 20 C -0.150 4.150 21 C -0.060 4.060 22 C -0.182 4.182 23 C -0.068 4.068 24 N -0.215 5.215 25 C -0.053 4.053 26 C -0.147 4.147 27 C -0.057 4.057 28 H 0.124 0.876 29 C -0.183 4.183 30 H 0.134 0.866 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.171 0.829 40 H 0.204 0.796 41 H 0.184 0.816 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.179 -10.905 1.735 11.255 hybrid contribution -0.271 1.729 0.501 1.821 sum -2.450 -9.175 2.236 9.756 Atomic orbital electron populations 1.23158 0.78133 1.04454 1.01410 1.86024 1.22110 1.27136 1.89137 1.19256 0.91210 0.84398 0.96607 1.20623 0.98793 0.91609 1.22565 1.20531 0.94552 0.96628 0.98119 1.20970 0.93089 0.98404 1.09890 1.17967 0.94477 0.89938 0.87971 1.19778 0.91758 1.03214 1.34373 0.89599 1.26704 1.04767 0.94185 0.91924 1.69887 1.40230 1.11240 1.22631 0.85340 0.76704 0.79741 0.78969 1.18884 1.19228 1.17748 1.18103 0.86048 0.86446 1.22091 1.86038 1.70059 1.38777 1.26921 1.22866 0.93296 0.93731 0.86579 0.93067 1.21754 1.01410 0.90715 1.01080 1.20995 0.94663 0.95362 0.94950 1.21880 1.02402 0.92006 1.01908 1.23155 0.89756 0.99550 0.94365 1.67740 1.11118 1.25842 1.16830 1.22390 1.00711 0.86815 0.95350 1.21577 0.95880 0.96572 1.00650 1.20676 0.95382 0.89055 1.00626 0.87630 1.21526 0.98612 1.01001 0.97210 0.86570 0.92672 0.92919 0.85546 0.86676 0.87391 0.89997 0.88733 0.88651 0.82891 0.79632 0.81608 0.93741 0.92907 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.81 113.37 1.11 1.74 16 2 O -0.33 -12.78 7.71 -79.77 -0.62 -13.40 16 3 C 0.13 5.87 6.68 22.54 0.15 6.02 16 4 C -0.32 -13.42 9.05 22.51 0.20 -13.22 16 5 C -0.08 -3.59 9.96 21.99 0.22 -3.38 16 6 C -0.20 -10.42 8.62 22.48 0.19 -10.22 16 7 C 0.10 5.25 5.58 -21.21 -0.12 5.13 16 8 C -0.46 -23.81 8.72 23.40 0.20 -23.60 16 9 H 0.09 4.37 5.78 -2.91 -0.02 4.36 16 10 C 0.04 1.94 5.19 85.24 0.44 2.38 16 11 N -0.81 -40.39 10.89 21.82 0.24 -40.16 16 12 Si 0.97 36.67 29.58 68.60 2.03 38.70 16 13 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 14 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 15 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 16 C -0.08 -4.03 5.68 23.15 0.13 -3.90 16 17 O -0.30 -13.98 7.32 -76.70 -0.56 -14.54 16 18 C 0.09 3.62 3.41 31.55 0.11 3.73 16 19 H 0.05 2.22 7.99 -2.38 -0.02 2.20 16 20 C -0.11 -3.81 6.51 30.44 0.20 -3.61 16 21 C -0.05 -1.61 6.20 -19.60 -0.12 -1.73 16 22 C -0.16 -4.17 10.12 22.36 0.23 -3.94 16 23 C 0.09 2.15 11.19 84.68 0.95 3.09 16 24 N -0.51 -14.49 10.36 -195.74 -2.03 -16.51 16 25 C 0.10 2.98 10.97 84.72 0.93 3.91 16 26 C -0.14 -4.54 5.62 -19.63 -0.11 -4.65 16 27 C -0.04 -1.28 3.43 -10.91 -0.04 -1.32 16 28 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 29 C -0.13 -4.29 8.41 71.98 0.61 -3.69 16 30 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.05 1.40 7.65 -2.39 -0.02 1.39 16 32 H 0.05 1.38 7.67 -2.39 -0.02 1.36 16 33 H 0.13 4.50 6.27 -2.91 -0.02 4.48 16 34 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 35 H 0.11 5.72 6.16 -2.91 -0.02 5.70 16 36 H 0.29 12.98 8.30 -92.71 -0.77 12.21 16 37 H 0.09 3.43 5.32 -2.38 -0.01 3.42 16 38 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.19 3.09 8.06 -2.91 -0.02 3.06 16 41 H 0.17 4.00 7.96 -2.91 -0.02 3.98 16 42 H 0.04 1.70 7.35 -2.39 -0.02 1.68 16 43 H 0.05 1.97 6.47 -2.39 -0.02 1.95 16 44 H 0.07 1.99 8.03 -2.39 -0.02 1.97 16 Total: -1.00 -61.62 355.86 5.37 -56.24 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 1.03 Total: 36.92 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 5.28 Total: -47.26 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -1.79 Total: -56.67 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -1.18 Total: -27.94 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -61.62 5.37 -56.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225842176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.509 kcal (2) G-P(sol) polarization free energy of solvation -61.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds