Wall clock time and date at job start Tue Mar 31 2020 14:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46795 * 2 1 4 4 N 1.46495 * 109.46998 * 120.00155 * 2 1 3 5 5 C 1.34775 * 119.99934 * 85.00126 * 4 2 1 6 6 O 1.21547 * 120.00331 * 359.97438 * 5 4 2 7 7 C 1.47868 * 120.00027 * 179.97438 * 5 4 2 8 8 C 1.39667 * 120.08173 * 359.97438 * 7 5 4 9 9 C 1.38034 * 120.10795 * 179.97438 * 8 7 5 10 10 C 1.38145 * 120.27941 * 0.02562 * 9 8 7 11 11 C 1.39472 * 120.16435 * 359.96953 * 10 9 8 12 12 C 1.48303 * 120.05293 * 180.02562 * 11 10 9 13 13 C 1.39280 * 120.15930 * 130.02093 * 12 11 10 14 14 C 1.38011 * 119.94836 * 179.97438 * 13 12 11 15 15 C 1.38444 * 120.26830 * 0.02562 * 14 13 12 16 16 C 1.38105 * 120.32404 * 0.02562 * 15 14 13 17 17 C 1.38752 * 120.04735 * 359.97438 * 16 15 14 18 18 O 1.35669 * 120.13722 * 180.02562 * 17 16 15 19 19 C 1.34821 * 116.99588 * 354.40304 * 18 17 16 20 20 H 1.08002 * 119.99878 * 5.05111 * 19 18 17 21 21 C 1.38649 * 119.99587 * 185.05125 * 19 18 17 22 22 N 1.31563 * 119.99813 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00461 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47087 * 89.99663 * 23 21 19 25 25 H 1.48497 * 109.47223 * 209.99863 * 23 21 19 26 26 H 1.48501 * 109.46873 * 329.99775 * 23 21 19 27 27 C 1.39159 * 119.88734 * 0.28143 * 11 10 9 28 28 H 1.09008 * 109.46835 * 299.99986 * 1 2 3 29 29 H 1.09001 * 109.47274 * 59.99429 * 1 2 3 30 30 H 1.09000 * 109.47192 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46578 * 240.00186 * 2 1 3 32 32 H 1.08997 * 109.46754 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47473 * 299.99998 * 3 2 1 34 34 H 1.09004 * 109.47161 * 60.00796 * 3 2 1 35 35 H 0.96998 * 119.99971 * 264.99652 * 4 2 1 36 36 H 1.08001 * 119.94851 * 359.95775 * 8 7 5 37 37 H 1.08003 * 119.85500 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.91479 * 179.97438 * 10 9 8 39 39 H 1.08006 * 120.02502 * 359.97438 * 13 12 11 40 40 H 1.08007 * 119.86681 * 180.02562 * 14 13 12 41 41 H 1.08007 * 119.83394 * 180.27307 * 15 14 13 42 42 H 1.07999 * 119.97342 * 179.97438 * 16 15 14 43 43 H 0.96995 * 119.99892 * 180.02562 * 22 21 19 44 44 H 1.08007 * 120.13101 * 179.74900 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1943 6 8 1.8576 -2.6692 0.2004 7 6 2.6405 -2.7293 2.4014 8 6 2.9741 -1.9990 3.5443 9 6 3.4343 -2.6492 4.6716 10 6 3.5681 -4.0242 4.6768 11 6 3.2382 -4.7647 3.5419 12 6 3.3823 -6.2407 3.5505 13 6 2.3290 -7.0491 3.1297 14 6 2.4680 -8.4222 3.1390 15 6 3.6511 -9.0009 3.5656 16 6 4.7023 -8.2100 3.9861 17 6 4.5770 -6.8282 3.9823 18 8 5.6086 -6.0495 4.3945 19 6 6.6855 -6.6801 4.9048 20 1 6.7340 -7.7590 4.8959 21 6 7.7306 -5.9435 5.4410 22 7 8.7812 -6.5588 5.9394 23 14 7.6463 -4.0774 5.4571 24 1 7.0067 -3.6216 6.7175 25 1 9.0195 -3.5191 5.3689 26 1 6.8457 -3.6081 4.2979 27 6 2.7786 -4.1159 2.3999 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 2.2491 -0.1823 1.9894 36 1 2.8722 -0.9238 3.5459 37 1 3.6915 -2.0805 5.5529 38 1 3.9291 -4.5268 5.5619 39 1 1.4041 -6.6017 2.7965 40 1 1.6505 -9.0478 2.8120 41 1 3.7539 -10.0761 3.5657 42 1 5.6226 -8.6675 4.3182 43 1 9.5122 -6.0435 6.3149 44 1 2.5258 -4.6851 1.5175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240082358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:30 Heat of formation + Delta-G solvation = -20.172789 kcal Electronic energy + Delta-G solvation = -26647.991215 eV Core-core repulsion = 22916.593553 eV Total energy + Delta-G solvation = -3731.397661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -40.25833 -39.43118 -38.02535 -36.54090 -36.06506 -32.82862 -32.40804 -31.57840 -30.53646 -29.36148 -28.33286 -27.51819 -25.35181 -24.06107 -23.15812 -21.59652 -21.10159 -21.01907 -20.12822 -18.05946 -17.88628 -16.92005 -16.50975 -15.79725 -15.31002 -15.18787 -14.91966 -14.64308 -14.39899 -14.14315 -13.90771 -13.80563 -13.71721 -13.47230 -13.21529 -12.92893 -12.61426 -12.46784 -12.42985 -12.27190 -12.21954 -11.66533 -11.65892 -11.46526 -11.22907 -11.16913 -10.88461 -10.77805 -10.71831 -10.23502 -9.89401 -9.46794 -9.28072 -9.01218 -8.89457 -8.70485 -8.00318 -7.35157 -6.49143 -4.15313 1.03158 1.42436 2.10547 2.22496 3.01169 3.04146 3.15644 3.19315 3.36442 4.05611 4.17156 4.43462 4.51679 4.73552 4.75555 4.80556 4.90530 4.95910 5.01548 5.13285 5.24212 5.26065 5.39817 5.47232 5.53487 5.60764 5.63391 5.67267 5.72342 5.81356 5.91322 5.98159 6.00346 6.17725 6.19985 6.34036 6.40113 6.48544 6.56759 6.72487 6.79729 6.98734 7.10231 7.20000 7.23577 7.41324 7.53075 7.71999 7.95552 8.18737 8.85822 9.46850 10.58210 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.003793 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.317025 B = 7380.922821 C = 9106.780108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 C -0.161 4.161 4 N -0.727 5.727 5 C 0.565 3.435 6 O -0.539 6.539 7 C -0.145 4.145 8 C -0.098 4.098 9 C -0.129 4.129 10 C -0.066 4.066 11 C -0.015 4.015 12 C -0.138 4.138 13 C -0.059 4.059 14 C -0.206 4.206 15 C -0.069 4.069 16 C -0.221 4.221 17 C 0.174 3.826 18 O -0.206 6.206 19 C -0.391 4.391 20 H 0.108 0.892 21 C 0.067 3.933 22 N -0.876 5.876 23 Si 0.895 3.105 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.253 1.253 27 C -0.053 4.053 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.399 0.601 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.136 0.864 43 H 0.280 0.720 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.905 12.350 -5.800 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 C -0.218 4.218 4 N -0.381 5.381 5 C 0.354 3.646 6 O -0.416 6.416 7 C -0.149 4.149 8 C -0.117 4.117 9 C -0.147 4.147 10 C -0.085 4.085 11 C -0.015 4.015 12 C -0.140 4.140 13 C -0.077 4.077 14 C -0.224 4.224 15 C -0.087 4.087 16 C -0.240 4.240 17 C 0.121 3.879 18 O -0.110 6.110 19 C -0.466 4.466 20 H 0.125 0.875 21 C -0.137 4.137 22 N -0.513 5.513 23 Si 0.720 3.280 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.177 1.177 27 C -0.072 4.072 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.234 0.766 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.153 0.847 43 H 0.090 0.910 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.838 12.188 -6.426 19.528 hybrid contribution 0.452 0.847 0.581 1.122 sum -13.386 13.036 -5.845 19.577 Atomic orbital electron populations 1.22193 0.95305 1.02764 1.01922 1.20930 0.94176 0.92760 0.88996 1.22082 1.01875 0.95036 1.02855 1.46030 1.68229 1.06981 1.16811 1.18374 0.76850 0.81808 0.87586 1.90747 1.50215 1.66049 1.34630 1.19674 1.06681 0.94413 0.94084 1.21121 0.98985 0.98821 0.92792 1.20996 1.00763 0.94619 0.98309 1.21557 0.94960 0.93637 0.98304 1.18617 0.97490 0.92498 0.92902 1.17796 0.93540 0.90875 1.11743 1.20738 0.96631 0.93234 0.97121 1.20608 0.98530 0.94378 1.08922 1.20897 0.92851 0.98831 0.96139 1.21241 1.01087 0.93090 1.08560 1.19023 0.86896 0.89663 0.92351 1.83577 1.23272 1.34925 1.69220 1.20788 0.93640 0.94072 1.38089 0.87518 1.24432 0.94074 1.00158 0.94988 1.69639 1.07176 1.36875 1.37651 0.86324 0.77889 0.83764 0.80039 1.19652 1.20788 1.17716 1.21314 0.95752 0.92532 0.97631 0.92528 0.91705 0.91944 0.89364 0.91867 0.90919 0.92079 0.76570 0.86351 0.85649 0.85132 0.86599 0.87133 0.87045 0.84672 0.90961 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.25 3.18 -67.93 -0.22 1.04 16 3 C -0.16 -1.02 9.38 37.16 0.35 -0.67 16 4 N -0.73 -7.75 5.03 -54.74 -0.28 -8.03 16 5 C 0.57 8.30 7.74 -12.32 -0.10 8.21 16 6 O -0.54 -9.62 16.00 5.32 0.09 -9.53 16 7 C -0.15 -2.23 5.87 -105.01 -0.62 -2.84 16 8 C -0.10 -1.31 9.54 -39.12 -0.37 -1.68 16 9 C -0.13 -1.91 10.02 -39.69 -0.40 -2.30 16 10 C -0.07 -1.18 8.78 -39.16 -0.34 -1.53 16 11 C -0.01 -0.28 5.27 -104.96 -0.55 -0.83 16 12 C -0.14 -2.73 5.48 -104.73 -0.57 -3.31 16 13 C -0.06 -1.02 9.51 -39.28 -0.37 -1.39 16 14 C -0.21 -3.39 10.03 -39.59 -0.40 -3.79 16 15 C -0.07 -1.22 10.03 -39.55 -0.40 -1.61 16 16 C -0.22 -4.63 9.16 -39.44 -0.36 -4.99 16 17 C 0.17 3.90 6.55 -38.75 -0.25 3.64 16 18 O -0.21 -5.17 6.92 0.32 0.00 -5.16 16 19 C -0.39 -10.60 9.95 30.88 0.31 -10.29 16 20 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 21 C 0.07 1.84 5.49 -17.52 -0.10 1.74 16 22 N -0.88 -24.75 13.96 55.48 0.77 -23.98 16 23 Si 0.89 20.95 28.62 -169.99 -4.86 16.09 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.25 -6.01 7.11 56.52 0.40 -5.61 16 27 C -0.05 -0.92 9.06 -38.83 -0.35 -1.28 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.98 7.58 -51.93 -0.39 0.58 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.40 3.27 6.63 -40.82 -0.27 2.99 16 36 H 0.12 1.10 6.39 -52.49 -0.34 0.77 16 37 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 38 H 0.13 2.44 7.67 -52.49 -0.40 2.04 16 39 H 0.12 1.73 8.04 -52.48 -0.42 1.31 16 40 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.14 2.96 5.64 -52.49 -0.30 2.66 16 43 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.13 2.33 7.63 -52.48 -0.40 1.93 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -30.98 372.73 -8.80 -39.77 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.75 Total: 8.16 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -4.39 Total: -22.94 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.50 Total: -32.00 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.09 Total: -14.70 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.86 Total: 16.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.98 -8.80 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240082358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.602 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds