Wall clock time and date at job start Tue Mar 31 2020 14:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46795 * 2 1 4 4 N 1.46495 * 109.46998 * 120.00155 * 2 1 3 5 5 C 1.34775 * 119.99934 * 85.00126 * 4 2 1 6 6 O 1.21547 * 120.00331 * 359.97438 * 5 4 2 7 7 C 1.47868 * 120.00027 * 179.97438 * 5 4 2 8 8 C 1.39667 * 120.08173 * 359.97438 * 7 5 4 9 9 C 1.38034 * 120.10795 * 179.97438 * 8 7 5 10 10 C 1.38145 * 120.27941 * 0.02562 * 9 8 7 11 11 C 1.39472 * 120.16435 * 359.96953 * 10 9 8 12 12 C 1.48303 * 120.05293 * 180.02562 * 11 10 9 13 13 C 1.39280 * 120.15930 * 130.02093 * 12 11 10 14 14 C 1.38011 * 119.94836 * 179.97438 * 13 12 11 15 15 C 1.38444 * 120.26830 * 0.02562 * 14 13 12 16 16 C 1.38105 * 120.32404 * 0.02562 * 15 14 13 17 17 C 1.38752 * 120.04735 * 359.97438 * 16 15 14 18 18 O 1.35669 * 120.13722 * 180.02562 * 17 16 15 19 19 C 1.34821 * 116.99588 * 354.40304 * 18 17 16 20 20 H 1.08002 * 119.99878 * 5.05111 * 19 18 17 21 21 C 1.38649 * 119.99587 * 185.05125 * 19 18 17 22 22 N 1.31563 * 119.99813 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00461 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47087 * 89.99663 * 23 21 19 25 25 H 1.48497 * 109.47223 * 209.99863 * 23 21 19 26 26 H 1.48501 * 109.46873 * 329.99775 * 23 21 19 27 27 C 1.39159 * 119.88734 * 0.28143 * 11 10 9 28 28 H 1.09008 * 109.46835 * 299.99986 * 1 2 3 29 29 H 1.09001 * 109.47274 * 59.99429 * 1 2 3 30 30 H 1.09000 * 109.47192 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46578 * 240.00186 * 2 1 3 32 32 H 1.08997 * 109.46754 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47473 * 299.99998 * 3 2 1 34 34 H 1.09004 * 109.47161 * 60.00796 * 3 2 1 35 35 H 0.96998 * 119.99971 * 264.99652 * 4 2 1 36 36 H 1.08001 * 119.94851 * 359.95775 * 8 7 5 37 37 H 1.08003 * 119.85500 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.91479 * 179.97438 * 10 9 8 39 39 H 1.08006 * 120.02502 * 359.97438 * 13 12 11 40 40 H 1.08007 * 119.86681 * 180.02562 * 14 13 12 41 41 H 1.08007 * 119.83394 * 180.27307 * 15 14 13 42 42 H 1.07999 * 119.97342 * 179.97438 * 16 15 14 43 43 H 0.96995 * 119.99892 * 180.02562 * 22 21 19 44 44 H 1.08007 * 120.13101 * 179.74900 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -2.0322 1.1943 6 8 1.8576 -2.6692 0.2004 7 6 2.6405 -2.7293 2.4014 8 6 2.9741 -1.9990 3.5443 9 6 3.4343 -2.6492 4.6716 10 6 3.5681 -4.0242 4.6768 11 6 3.2382 -4.7647 3.5419 12 6 3.3823 -6.2407 3.5505 13 6 2.3290 -7.0491 3.1297 14 6 2.4680 -8.4222 3.1390 15 6 3.6511 -9.0009 3.5656 16 6 4.7023 -8.2100 3.9861 17 6 4.5770 -6.8282 3.9823 18 8 5.6086 -6.0495 4.3945 19 6 6.6855 -6.6801 4.9048 20 1 6.7340 -7.7590 4.8959 21 6 7.7306 -5.9435 5.4410 22 7 8.7812 -6.5588 5.9394 23 14 7.6463 -4.0774 5.4571 24 1 7.0067 -3.6216 6.7175 25 1 9.0195 -3.5191 5.3689 26 1 6.8457 -3.6081 4.2979 27 6 2.7786 -4.1159 2.3999 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 2.2491 -0.1823 1.9894 36 1 2.8722 -0.9238 3.5459 37 1 3.6915 -2.0805 5.5529 38 1 3.9291 -4.5268 5.5619 39 1 1.4041 -6.6017 2.7965 40 1 1.6505 -9.0478 2.8120 41 1 3.7539 -10.0761 3.5657 42 1 5.6226 -8.6675 4.3182 43 1 9.5122 -6.0435 6.3149 44 1 2.5258 -4.6851 1.5175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240082358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:27 Heat of formation + Delta-G solvation = -37.687770 kcal Electronic energy + Delta-G solvation = -26648.750721 eV Core-core repulsion = 22916.593553 eV Total energy + Delta-G solvation = -3732.157168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 6.06 seconds Orbital eigenvalues (eV) -41.48020 -40.90628 -39.32563 -38.13765 -36.99941 -34.50724 -33.96654 -32.72666 -31.64492 -30.90360 -29.74684 -28.09216 -27.26062 -25.22219 -24.51718 -23.00773 -22.43852 -22.04727 -21.31571 -19.80800 -19.37001 -18.40862 -17.52763 -16.97361 -16.76655 -16.56254 -16.19647 -15.96709 -15.77647 -15.46948 -15.36799 -15.23601 -15.01214 -14.71111 -14.36412 -14.20272 -14.09153 -13.93788 -13.52277 -13.18637 -13.09860 -13.04257 -12.88197 -12.61977 -12.50776 -12.44500 -12.30506 -12.17004 -11.93919 -11.87837 -11.33228 -11.04474 -10.92368 -10.34938 -10.22386 -9.91028 -9.47429 -8.94881 -8.51370 -6.22639 -0.21750 0.10110 0.62507 0.74164 1.28704 1.32747 1.50969 1.82428 2.09814 2.26633 2.72308 2.84866 3.04701 3.11694 3.62411 3.67716 3.92024 3.96319 4.08229 4.12937 4.14931 4.24031 4.29291 4.32516 4.46508 4.51381 4.62904 4.74027 4.75615 4.80303 4.88720 4.93441 4.94278 5.01883 5.11605 5.23428 5.26883 5.33458 5.33734 5.40934 5.50348 5.54538 5.58093 5.69935 5.77550 5.86552 5.91654 6.20463 6.49312 6.83345 7.15816 7.56816 8.60152 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012407 B = 0.003793 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.317025 B = 7380.922821 C = 9106.780108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.130 3.870 3 C -0.153 4.153 4 N -0.708 5.708 5 C 0.563 3.437 6 O -0.579 6.579 7 C -0.150 4.150 8 C -0.077 4.077 9 C -0.127 4.127 10 C -0.087 4.087 11 C -0.040 4.040 12 C -0.136 4.136 13 C -0.063 4.063 14 C -0.182 4.182 15 C -0.070 4.070 16 C -0.241 4.241 17 C 0.136 3.864 18 O -0.227 6.227 19 C -0.398 4.398 20 H 0.081 0.919 21 C 0.015 3.985 22 N -0.922 5.922 23 Si 0.957 3.043 24 H -0.254 1.254 25 H -0.273 1.273 26 H -0.260 1.260 27 C -0.065 4.065 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.033 0.967 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.414 0.586 36 H 0.168 0.832 37 H 0.157 0.843 38 H 0.111 0.889 39 H 0.144 0.856 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.113 0.887 43 H 0.284 0.716 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.633 15.467 -6.353 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 C -0.210 4.210 4 N -0.361 5.361 5 C 0.352 3.648 6 O -0.460 6.460 7 C -0.153 4.153 8 C -0.096 4.096 9 C -0.145 4.145 10 C -0.105 4.105 11 C -0.040 4.040 12 C -0.137 4.137 13 C -0.081 4.081 14 C -0.200 4.200 15 C -0.088 4.088 16 C -0.260 4.260 17 C 0.087 3.913 18 O -0.134 6.134 19 C -0.474 4.474 20 H 0.099 0.901 21 C -0.184 4.184 22 N -0.563 5.563 23 Si 0.779 3.221 24 H -0.179 1.179 25 H -0.198 1.198 26 H -0.185 1.185 27 C -0.084 4.084 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.252 0.748 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.129 0.871 39 H 0.162 0.838 40 H 0.172 0.828 41 H 0.161 0.839 42 H 0.131 0.869 43 H 0.094 0.906 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.609 15.324 -6.974 23.650 hybrid contribution 0.993 -0.205 0.606 1.181 sum -15.616 15.119 -6.368 22.650 Atomic orbital electron populations 1.22154 0.94558 1.01412 1.03604 1.21109 0.94778 0.94134 0.87384 1.22041 1.01724 0.92777 1.04491 1.45953 1.66598 1.05625 1.17931 1.18342 0.76734 0.82987 0.86773 1.90731 1.52192 1.67178 1.35872 1.19870 1.06363 0.93841 0.95240 1.21576 0.96052 1.01028 0.90918 1.21361 0.99746 0.93385 0.99973 1.21591 0.96035 0.95323 0.97593 1.18637 0.99455 0.91979 0.93955 1.18186 0.92919 0.92391 1.10238 1.21172 0.96900 0.93692 0.96303 1.21149 0.98747 0.94507 1.05573 1.21252 0.92171 1.00254 0.95121 1.21310 1.01648 0.93230 1.09800 1.19531 0.87545 0.90427 0.93837 1.83538 1.23505 1.34924 1.71397 1.20719 0.94881 0.93293 1.38488 0.90133 1.25196 0.93679 1.04634 0.94857 1.69728 1.08213 1.38522 1.39842 0.85401 0.78066 0.78396 0.80233 1.17870 1.19828 1.18452 1.21255 0.96510 0.93769 0.96835 0.90980 0.89944 0.94746 0.91721 0.92052 0.89498 0.90263 0.74780 0.81484 0.82560 0.87062 0.83810 0.82825 0.83876 0.86925 0.90623 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.48 71.98 0.68 -1.64 16 2 C 0.13 2.08 3.18 44.99 0.14 2.22 16 3 C -0.15 -1.37 9.38 71.98 0.68 -0.69 16 4 N -0.71 -13.02 5.03 -445.39 -2.24 -15.26 16 5 C 0.56 15.67 7.74 86.79 0.67 16.34 16 6 O -0.58 -20.60 16.00 -3.86 -0.06 -20.66 16 7 C -0.15 -4.33 5.87 -20.12 -0.12 -4.45 16 8 C -0.08 -1.77 9.54 22.57 0.22 -1.56 16 9 C -0.13 -3.42 10.02 22.20 0.22 -3.19 16 10 C -0.09 -3.09 8.78 22.55 0.20 -2.89 16 11 C -0.04 -1.50 5.27 -20.08 -0.11 -1.61 16 12 C -0.14 -5.47 5.48 -19.93 -0.11 -5.58 16 13 C -0.06 -2.08 9.51 22.47 0.21 -1.86 16 14 C -0.18 -5.50 10.03 22.26 0.22 -5.28 16 15 C -0.07 -2.41 10.03 22.29 0.22 -2.18 16 16 C -0.24 -10.60 9.16 22.36 0.20 -10.40 16 17 C 0.14 6.43 6.55 22.81 0.15 6.58 16 18 O -0.23 -12.06 6.92 -21.75 -0.15 -12.21 16 19 C -0.40 -23.08 9.95 67.92 0.68 -22.40 16 20 H 0.08 4.92 5.44 -2.91 -0.02 4.91 16 21 C 0.01 0.86 5.49 84.83 0.47 1.32 16 22 N -0.92 -54.74 13.96 21.61 0.30 -54.44 16 23 Si 0.96 44.36 28.62 68.60 1.96 46.32 16 24 H -0.25 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 27 C -0.06 -2.23 9.06 22.76 0.21 -2.02 16 28 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 1.37 7.58 -2.39 -0.02 1.35 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.41 4.89 6.63 -92.71 -0.61 4.28 16 36 H 0.17 2.13 6.39 -2.91 -0.02 2.11 16 37 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 38 H 0.11 4.31 7.67 -2.91 -0.02 4.29 16 39 H 0.14 3.95 8.04 -2.91 -0.02 3.93 16 40 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 42 H 0.11 5.40 5.64 -2.91 -0.02 5.38 16 43 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.12 4.40 7.63 -2.91 -0.02 4.38 16 Total: -1.00 -73.84 372.73 5.06 -68.78 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.41 Total: 26.76 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 4.84 Total: -39.29 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.94 Total: -69.69 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.21 Total: -32.87 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.96 Total: 46.32 kcal Total: -73.84 5.06 -68.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240082358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.092 kcal (2) G-P(sol) polarization free energy of solvation -73.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.06 seconds