Wall clock time and date at job start Tue Mar 31 2020 14:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47301 * 2 1 4 4 C 1.53006 * 109.46950 * 240.00251 * 2 1 3 5 5 O 1.45200 * 109.47234 * 120.00299 * 2 1 3 6 6 C 1.34739 * 117.00120 * 59.99503 * 5 2 1 7 7 O 1.21479 * 120.00032 * 0.02562 * 6 5 2 8 8 C 1.47635 * 119.99655 * 180.02562 * 6 5 2 9 9 C 1.39792 * 119.99825 * 180.02562 * 8 6 5 10 10 C 1.37608 * 119.98923 * 180.02562 * 9 8 6 11 11 C 1.39747 * 120.00479 * 359.97438 * 10 9 8 12 12 C 1.47889 * 119.99047 * 180.02562 * 11 10 9 13 13 C 1.39923 * 119.44622 * 179.97438 * 12 11 10 14 14 C 1.36621 * 119.46205 * 180.02562 * 13 12 11 15 15 C 1.41306 * 118.41035 * 0.25487 * 14 13 12 16 16 C 1.40995 * 120.55275 * 179.74550 * 15 14 13 17 17 H 1.08001 * 120.00084 * 330.27619 * 16 15 14 18 18 C 1.40120 * 119.99888 * 150.27141 * 16 15 14 19 19 N 1.30735 * 119.99981 * 161.76236 * 18 16 15 20 20 Si 1.86800 * 119.99934 * 341.76813 * 18 16 15 21 21 H 1.48490 * 109.47420 * 95.41651 * 20 18 16 22 22 H 1.48506 * 109.46667 * 215.41681 * 20 18 16 23 23 H 1.48497 * 109.47163 * 335.41333 * 20 18 16 24 24 C 1.41007 * 118.89204 * 359.50436 * 15 14 13 25 25 N 1.31212 * 120.40341 * 0.50264 * 24 15 14 26 26 C 1.39740 * 120.01152 * 0.29793 * 11 10 9 27 27 C 1.37597 * 120.00893 * 359.44514 * 26 11 10 28 28 H 1.08998 * 109.46716 * 300.00371 * 1 2 3 29 29 H 1.08997 * 109.46938 * 60.00050 * 1 2 3 30 30 H 1.08994 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47205 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46716 * 300.00001 * 3 2 1 33 33 H 1.08993 * 109.46907 * 59.99888 * 3 2 1 34 34 H 1.09003 * 109.46685 * 299.99642 * 4 2 1 35 35 H 1.08994 * 109.47101 * 59.99830 * 4 2 1 36 36 H 1.09004 * 109.46582 * 180.02562 * 4 2 1 37 37 H 1.07994 * 120.01042 * 359.97438 * 9 8 6 38 38 H 1.08003 * 119.99492 * 179.97438 * 10 9 8 39 39 H 1.07998 * 120.26761 * 0.02562 * 13 12 11 40 40 H 1.08003 * 120.79079 * 179.97438 * 14 13 12 41 41 H 0.96991 * 119.99900 * 179.97438 * 19 18 16 42 42 H 1.07999 * 119.80265 * 180.24863 * 24 15 14 43 43 H 1.07999 * 119.99446 * 179.73059 * 26 11 10 44 44 H 1.07999 * 120.00916 * 180.27524 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6519 -1.9733 1.3384 7 8 0.9514 -2.5105 0.5039 8 6 2.1066 -2.7325 2.5202 9 6 1.7314 -4.0698 2.6786 10 6 2.1548 -4.7771 3.7804 11 6 2.9602 -4.1588 4.7406 12 6 3.4155 -4.9194 5.9243 13 6 4.2221 -4.2892 6.8784 14 6 4.6433 -4.9917 7.9718 15 6 4.2488 -6.3429 8.0957 16 6 4.6622 -7.1115 9.2031 17 1 5.6031 -6.8973 9.6881 18 6 3.8522 -8.1533 9.6743 19 7 4.3611 -9.0807 10.4424 20 14 2.0453 -8.2170 9.2048 21 1 1.8712 -9.1021 8.0253 22 1 1.2564 -8.7501 10.3444 23 1 1.5719 -6.8495 8.8718 24 6 3.4307 -6.9082 7.0960 25 7 3.0520 -6.1916 6.0641 26 6 3.3306 -2.8203 4.5852 27 6 2.9119 -2.1141 3.4810 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 1.1086 -4.5476 1.9368 38 1 1.8646 -5.8101 3.9031 39 1 4.5092 -3.2558 6.7514 40 1 5.2667 -4.5267 8.7212 41 1 3.8004 -9.8016 10.7689 42 1 3.1172 -7.9384 7.1780 43 1 3.9495 -2.3415 5.3296 44 1 3.2019 -1.0810 3.3588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240437319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:00 Heat of formation + Delta-G solvation = -58.348271 kcal Electronic energy + Delta-G solvation = -25940.575141 eV Core-core repulsion = 22207.522066 eV Total energy + Delta-G solvation = -3733.053074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87374 -40.82979 -39.48612 -37.86383 -36.02874 -35.08229 -33.70421 -33.21705 -31.92014 -31.17599 -28.36211 -28.27136 -27.69610 -25.23346 -24.75931 -23.38497 -22.71410 -21.97516 -20.62290 -19.69369 -18.90058 -18.07812 -17.69406 -17.31150 -16.97994 -16.60722 -16.19719 -15.53017 -15.49975 -15.35164 -15.31232 -14.90572 -14.73360 -14.51539 -14.38027 -14.35483 -13.75107 -13.66198 -13.33240 -13.14272 -12.98753 -12.94858 -12.92315 -12.84246 -12.68837 -12.50113 -12.44689 -12.15170 -11.94618 -11.91557 -11.38260 -11.37122 -11.03808 -10.56772 -10.40884 -10.07122 -9.97675 -9.17268 -9.11393 -6.62882 -0.56548 0.46048 0.58266 0.77074 1.22613 1.32873 1.39768 1.62385 1.65295 2.00418 2.45793 2.89985 3.49650 3.51628 3.62689 3.76637 3.81505 3.87694 3.97513 4.03016 4.11308 4.30560 4.39263 4.46467 4.58158 4.61922 4.65294 4.68152 4.77805 4.78205 4.83273 4.87948 4.90081 4.98951 5.07878 5.12461 5.15264 5.26668 5.27691 5.31326 5.36751 5.45487 5.50549 5.58805 5.75297 5.89384 5.94899 6.06856 6.41502 6.54148 6.79963 7.44984 7.93489 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.033543 B = 0.002259 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.558525 B =12389.293988 C =12859.131392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.105 3.895 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.348 6.348 6 C 0.518 3.482 7 O -0.527 6.527 8 C -0.163 4.163 9 C -0.052 4.052 10 C -0.134 4.134 11 C 0.029 3.971 12 C -0.015 4.015 13 C -0.095 4.095 14 C -0.188 4.188 15 C 0.032 3.968 16 C -0.442 4.442 17 H 0.078 0.922 18 C 0.056 3.944 19 N -0.811 5.811 20 Si 0.958 3.042 21 H -0.258 1.258 22 H -0.265 1.265 23 H -0.265 1.265 24 C -0.046 4.046 25 N -0.451 5.451 26 C -0.137 4.137 27 C -0.044 4.044 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.155 0.845 40 H 0.132 0.868 41 H 0.303 0.697 42 H 0.129 0.871 43 H 0.155 0.845 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.743 18.096 -15.929 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.070 3.930 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.266 6.266 6 C 0.365 3.635 7 O -0.419 6.419 8 C -0.164 4.164 9 C -0.071 4.071 10 C -0.153 4.153 11 C 0.028 3.972 12 C -0.150 4.150 13 C -0.115 4.115 14 C -0.213 4.213 15 C 0.027 3.973 16 C -0.470 4.470 17 H 0.096 0.904 18 C -0.164 4.164 19 N -0.434 5.434 20 Si 0.781 3.219 21 H -0.183 1.183 22 H -0.191 1.191 23 H -0.189 1.189 24 C -0.209 4.209 25 N -0.159 5.159 26 C -0.156 4.156 27 C -0.062 4.062 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.172 0.828 40 H 0.150 0.850 41 H 0.115 0.885 42 H 0.146 0.854 43 H 0.173 0.827 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.420 17.366 -16.626 24.645 hybrid contribution -0.059 -0.654 0.871 1.091 sum -5.478 16.712 -15.755 23.612 Atomic orbital electron populations 1.22468 0.94006 1.03472 1.03852 1.22546 0.94689 0.93493 0.82301 1.21874 1.02489 0.90568 1.04298 1.22471 1.01828 1.01981 0.97516 1.86588 1.69737 1.24085 1.46145 1.21100 0.76640 0.80648 0.85072 1.90715 1.36748 1.70657 1.43784 1.19227 1.06568 0.94559 0.96089 1.21142 0.96836 0.92416 0.96662 1.21186 0.99300 1.00773 0.93996 1.19012 0.93384 0.93336 0.91464 1.19443 1.06210 0.91217 0.98128 1.21712 0.95660 1.01004 0.93076 1.21392 1.06383 0.93200 1.00351 1.18875 0.91938 0.93272 0.93203 1.19561 1.05827 1.10470 1.11186 0.90419 1.26797 1.04564 0.92258 0.92783 1.69620 1.40261 1.08476 1.25069 0.85602 0.77462 0.80331 0.78479 1.18288 1.19090 1.18894 1.22462 1.06455 0.99086 0.92922 1.66930 1.19292 1.07132 1.22511 1.21394 1.02306 0.92526 0.99373 1.21482 0.92936 1.00679 0.91143 0.91763 0.88932 0.92311 0.91100 0.88183 0.91106 0.92310 0.88928 0.91758 0.84611 0.85631 0.82782 0.85039 0.88549 0.85384 0.82717 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 8.37 71.98 0.60 -2.49 16 2 C 0.11 1.82 1.13 -10.79 -0.01 1.81 16 3 C -0.14 -1.47 8.85 71.98 0.64 -0.83 16 4 C -0.18 -3.09 8.37 71.98 0.60 -2.49 16 5 O -0.35 -7.79 9.12 -56.49 -0.52 -8.30 16 6 C 0.52 13.85 7.20 70.30 0.51 14.36 16 7 O -0.53 -15.82 11.87 19.90 0.24 -15.59 16 8 C -0.16 -4.46 5.88 -20.04 -0.12 -4.58 16 9 C -0.05 -1.56 9.58 22.50 0.22 -1.34 16 10 C -0.13 -4.50 9.55 22.49 0.21 -4.28 16 11 C 0.03 0.99 5.88 -19.99 -0.12 0.88 16 12 C -0.02 -0.62 6.74 41.92 0.28 -0.34 16 13 C -0.10 -3.54 9.38 22.30 0.21 -3.33 16 14 C -0.19 -7.89 9.88 22.65 0.22 -7.67 16 15 C 0.03 1.55 5.12 -21.17 -0.11 1.44 16 16 C -0.44 -22.55 9.58 23.40 0.22 -22.32 16 17 H 0.08 4.14 8.06 -2.91 -0.02 4.12 16 18 C 0.06 2.76 5.41 85.31 0.46 3.22 16 19 N -0.81 -40.14 13.92 21.86 0.30 -39.83 16 20 Si 0.96 40.58 24.52 68.60 1.68 42.27 16 21 H -0.26 -10.63 6.71 99.48 0.67 -9.96 16 22 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.26 -11.98 6.85 99.48 0.68 -11.30 16 24 C -0.05 -2.20 8.37 85.46 0.71 -1.48 16 25 N -0.45 -20.85 9.37 -182.72 -1.71 -22.56 16 26 C -0.14 -3.65 9.40 22.48 0.21 -3.44 16 27 C -0.04 -1.06 9.60 22.50 0.22 -0.85 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.34 5.88 -2.39 -0.01 1.32 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 1.34 5.88 -2.39 -0.01 1.32 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.14 3.83 7.64 -2.91 -0.02 3.80 16 38 H 0.13 4.49 7.51 -2.91 -0.02 4.46 16 39 H 0.15 4.28 6.13 -2.91 -0.02 4.26 16 40 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 41 H 0.30 13.34 8.29 -92.71 -0.77 12.58 16 42 H 0.13 6.15 4.70 -2.91 -0.01 6.14 16 43 H 0.16 3.30 6.13 -2.91 -0.02 3.28 16 44 H 0.16 2.91 7.60 -2.91 -0.02 2.89 16 Total: -1.00 -59.14 360.63 5.92 -53.22 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.96 Total: 24.55 kcal Atomic # 6 Polarization: -38.72 SS G_CDS: 4.97 Total: -33.75 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -1.41 Total: -62.40 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.28 Total: -23.89 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.68 Total: 42.27 kcal Total: -59.14 5.92 -53.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240437319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.129 kcal (2) G-P(sol) polarization free energy of solvation -59.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds