Wall clock time and date at job start Tue Mar 31 2020 14:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47372 * 2 1 4 4 C 1.53001 * 109.47060 * 240.00303 * 2 1 3 5 5 O 1.45199 * 109.47276 * 120.00277 * 2 1 3 6 6 C 1.34718 * 117.00214 * 59.99772 * 5 2 1 7 7 O 1.21454 * 119.99578 * 0.02562 * 6 5 2 8 8 C 1.47827 * 119.99925 * 179.97438 * 6 5 2 9 9 N 1.32745 * 119.81801 * 6.69111 * 8 6 5 10 10 C 1.31442 * 121.76107 * 180.28874 * 9 8 6 11 11 C 1.38766 * 121.18259 * 359.70030 * 10 9 8 12 12 C 1.38281 * 119.49292 * 0.02562 * 11 10 9 13 13 C 1.39831 * 118.38174 * 359.97438 * 12 11 10 14 14 C 1.48204 * 120.59344 * 180.02562 * 13 12 11 15 15 C 1.39811 * 120.01213 * 238.66477 * 14 13 12 16 16 C 1.38365 * 120.36972 * 180.02562 * 15 14 13 17 17 C 1.37729 * 120.39195 * 0.28292 * 16 15 14 18 18 C 1.40762 * 120.01031 * 359.48707 * 17 16 15 19 19 C 1.41428 * 120.18444 * 180.27764 * 18 17 16 20 20 H 1.07996 * 120.00476 * 204.70250 * 19 18 17 21 21 C 1.39936 * 119.99675 * 24.70357 * 19 18 17 22 22 N 1.30830 * 120.00094 * 17.17990 * 21 19 18 23 23 Si 1.86800 * 119.99606 * 197.17913 * 21 19 18 24 24 H 1.48496 * 109.47495 * 59.99947 * 23 21 19 25 25 H 1.48509 * 109.46869 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47273 * 299.99636 * 23 21 19 27 27 C 1.38840 * 120.00855 * 58.69275 * 14 13 12 28 28 H 1.09007 * 109.46747 * 299.99992 * 1 2 3 29 29 H 1.08997 * 109.47625 * 59.99562 * 1 2 3 30 30 H 1.09000 * 109.47468 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47603 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47400 * 300.00361 * 3 2 1 33 33 H 1.08998 * 109.46961 * 60.00145 * 3 2 1 34 34 H 1.09007 * 109.46745 * 300.00059 * 4 2 1 35 35 H 1.09000 * 109.47230 * 59.99361 * 4 2 1 36 36 H 1.08996 * 109.47698 * 180.02562 * 4 2 1 37 37 H 1.07995 * 119.40737 * 179.72765 * 10 9 8 38 38 H 1.08001 * 120.25280 * 180.02562 * 11 10 9 39 39 H 1.08000 * 120.80293 * 179.97438 * 12 11 10 40 40 H 1.08003 * 119.81482 * 0.02562 * 15 14 13 41 41 H 1.08006 * 119.80194 * 180.02562 * 16 15 14 42 42 H 1.07997 * 119.99382 * 179.74593 * 17 16 15 43 43 H 0.97003 * 119.99637 * 180.02562 * 22 21 19 44 44 H 1.08005 * 120.19374 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6520 -1.9731 1.3384 7 8 0.9517 -2.5102 0.5040 8 6 2.1082 -2.7337 2.5211 9 7 2.7610 -2.1109 3.4948 10 6 3.1886 -2.7506 4.5605 11 6 2.9694 -4.1118 4.7175 12 6 2.2896 -4.8096 3.7361 13 6 1.8435 -4.1095 2.6109 14 6 1.1094 -4.8086 1.5297 15 6 1.6087 -4.7960 0.2239 16 6 0.9291 -5.4457 -0.7912 17 6 -0.2498 -6.1073 -0.5282 18 6 -0.7648 -6.1346 0.7815 19 6 -1.9721 -6.8178 1.0569 20 1 -2.5724 -6.5320 1.9079 21 6 -2.3888 -7.8642 0.2265 22 7 -1.5357 -8.4350 -0.5848 23 14 -4.1632 -8.4461 0.2764 24 1 -5.0633 -7.3215 -0.0845 25 1 -4.3469 -9.5579 -0.6909 26 1 -4.4898 -8.9221 1.6446 27 6 -0.0748 -5.4757 1.8133 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6765 -1.7489 -1.2493 35 1 1.6765 -0.2074 -2.1393 36 1 3.1299 -0.7216 -1.2492 37 1 3.7196 -2.2069 5.3278 38 1 3.3270 -4.6223 5.5995 39 1 2.1077 -5.8694 3.8364 40 1 2.5301 -4.2762 0.0063 41 1 1.3234 -5.4305 -1.7966 42 1 -0.7771 -6.6089 -1.3262 43 1 -1.8248 -9.1601 -1.1606 44 1 -0.4637 -5.4877 2.8208 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242870638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:32 Heat of formation + Delta-G solvation = -28.036083 kcal Electronic energy + Delta-G solvation = -27621.066491 eV Core-core repulsion = 23889.327851 eV Total energy + Delta-G solvation = -3731.738639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.76573 -39.55877 -37.45445 -36.49532 -34.01856 -33.71444 -32.49341 -31.65883 -29.82179 -28.37726 -27.33931 -27.26383 -25.26607 -24.97649 -23.42353 -21.90719 -20.57150 -20.26521 -19.51487 -17.68308 -17.31474 -16.55677 -15.91642 -15.75386 -15.45974 -15.24311 -14.71327 -14.57777 -14.22486 -13.85698 -13.63333 -13.47573 -13.12069 -13.10499 -12.86230 -12.46113 -12.36498 -12.08222 -11.86795 -11.78154 -11.74761 -11.59001 -11.31376 -11.20065 -11.09132 -11.02327 -10.63979 -10.48913 -10.11825 -9.98831 -9.74834 -9.61765 -9.46324 -9.34728 -9.09984 -8.81968 -7.42909 -7.10874 -6.71759 -4.31072 0.73540 1.35682 2.73282 2.81715 2.89664 2.97589 3.08103 3.11266 3.28949 3.95772 4.03555 4.34543 4.64107 4.82129 4.85431 4.91609 4.99991 5.04715 5.07225 5.13706 5.48037 5.51846 5.60785 5.72188 5.75115 5.79398 5.82091 5.89293 5.95823 6.03840 6.18630 6.27781 6.39715 6.39768 6.42945 6.48216 6.67406 6.80870 6.90047 7.07647 7.23333 7.34882 7.54455 7.82017 7.86034 8.03684 8.08294 8.27423 8.30379 8.65099 8.92174 8.98237 10.23650 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.004118 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.697318 B = 6798.333293 C = 8192.413717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.117 3.883 3 C -0.137 4.137 4 C -0.184 4.184 5 O -0.337 6.337 6 C 0.509 3.491 7 O -0.445 6.445 8 C 0.083 3.917 9 N -0.438 5.438 10 C 0.074 3.926 11 C -0.142 4.142 12 C -0.081 4.081 13 C 0.007 3.993 14 C -0.047 4.047 15 C -0.164 4.164 16 C -0.108 4.108 17 C -0.147 4.147 18 C 0.106 3.894 19 C -0.467 4.467 20 H 0.075 0.925 21 C 0.077 3.923 22 N -0.799 5.799 23 Si 0.906 3.094 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.192 4.192 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.159 0.841 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.279 0.721 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.278 11.361 4.114 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.080 3.920 3 C -0.194 4.194 4 C -0.241 4.241 5 O -0.255 6.255 6 C 0.350 3.650 7 O -0.328 6.328 8 C -0.052 4.052 9 N -0.149 5.149 10 C -0.087 4.087 11 C -0.162 4.162 12 C -0.107 4.107 13 C 0.005 3.995 14 C -0.048 4.048 15 C -0.184 4.184 16 C -0.127 4.127 17 C -0.167 4.167 18 C 0.104 3.896 19 C -0.497 4.497 20 H 0.093 0.907 21 C -0.139 4.139 22 N -0.425 5.425 23 Si 0.730 3.270 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.211 4.211 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.176 0.824 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.136 0.864 43 H 0.090 0.910 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.193 11.930 3.518 14.368 hybrid contribution -0.917 -1.195 0.074 1.508 sum 6.276 10.736 3.592 12.944 Atomic orbital electron populations 1.22490 0.94125 1.05209 1.02239 1.22115 0.94392 0.92054 0.83402 1.21809 1.02010 0.92926 1.02676 1.22507 1.01378 1.03782 0.96460 1.86687 1.69768 1.24699 1.44344 1.20599 0.78807 0.80480 0.85070 1.91000 1.32533 1.68413 1.40865 1.20186 1.01021 0.90358 0.93656 1.67551 1.07120 1.39587 1.00646 1.22711 0.98642 0.91986 0.95333 1.22351 0.98353 0.95825 0.99677 1.21830 0.95548 1.01170 0.92144 1.20089 0.92977 0.91714 0.94754 1.17951 0.95878 0.99789 0.91189 1.20014 1.00726 1.05656 0.91997 1.20502 0.96510 0.99091 0.96550 1.21383 0.96551 1.01547 0.97190 1.17426 0.91857 0.89694 0.90617 1.19474 1.05315 1.13999 1.10908 0.90703 1.25839 0.98876 0.95385 0.93844 1.69810 1.35022 1.18608 1.19076 0.86415 0.82935 0.78664 0.78958 1.18910 1.20398 1.19113 1.20921 0.96187 1.06351 0.97690 0.92258 0.91346 0.89315 0.91682 0.90657 0.91637 0.89171 0.91362 0.92316 0.82392 0.84329 0.83620 0.90384 0.89453 0.86425 0.90962 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 8.37 37.15 0.31 -2.25 16 2 C 0.12 1.62 1.13 -90.62 -0.10 1.52 16 3 C -0.14 -1.45 8.85 37.16 0.33 -1.12 16 4 C -0.18 -2.53 8.37 37.16 0.31 -2.22 16 5 O -0.34 -5.70 9.71 -40.54 -0.39 -6.09 16 6 C 0.51 9.64 6.96 34.65 0.24 9.88 16 7 O -0.45 -9.20 7.84 -19.23 -0.15 -9.35 16 8 C 0.08 1.55 6.76 -82.74 -0.56 0.99 16 9 N -0.44 -7.25 10.12 -9.59 -0.10 -7.34 16 10 C 0.07 0.96 11.17 -17.52 -0.20 0.76 16 11 C -0.14 -1.73 10.10 -39.37 -0.40 -2.13 16 12 C -0.08 -1.26 9.81 -38.97 -0.38 -1.64 16 13 C 0.01 0.13 5.41 -104.39 -0.56 -0.43 16 14 C -0.05 -1.06 4.16 -104.99 -0.44 -1.49 16 15 C -0.16 -3.74 6.83 -38.95 -0.27 -4.00 16 16 C -0.11 -2.57 10.01 -39.72 -0.40 -2.97 16 17 C -0.15 -3.85 8.69 -38.81 -0.34 -4.19 16 18 C 0.11 2.83 5.57 -106.87 -0.60 2.23 16 19 C -0.47 -12.42 9.05 -37.73 -0.34 -12.76 16 20 H 0.07 1.92 7.90 -52.49 -0.41 1.51 16 21 C 0.08 1.95 5.15 -17.34 -0.09 1.86 16 22 N -0.80 -20.66 10.93 55.55 0.61 -20.05 16 23 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 24 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 C -0.19 -4.68 9.41 -38.50 -0.36 -5.04 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.51 5.88 -51.93 -0.31 1.21 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.51 5.88 -51.93 -0.31 1.20 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.08 1.68 7.82 -52.48 -0.41 1.27 16 41 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 42 H 0.12 3.18 6.14 -52.49 -0.32 2.85 16 43 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 44 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -29.54 364.51 -9.37 -38.91 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.97 Total: 7.65 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -3.84 Total: -23.01 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 0.51 Total: -27.39 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.54 Total: -15.44 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.54 -9.37 -38.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242870638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.872 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds