Wall clock time and date at job start Tue Mar 31 2020 14:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47144 * 2 1 4 4 C 1.50699 * 109.46792 * 120.00000 * 2 1 3 5 5 O 1.21282 * 119.99734 * 239.99622 * 4 2 1 6 6 N 1.34775 * 120.00274 * 60.00120 * 4 2 1 7 7 C 1.39934 * 120.00307 * 175.51169 * 6 4 2 8 8 C 1.38983 * 120.00691 * 35.13123 * 7 6 4 9 9 C 1.38184 * 120.18170 * 180.02562 * 8 7 6 10 10 C 1.38070 * 120.20687 * 359.97438 * 9 8 7 11 11 C 1.39419 * 120.00947 * 359.97426 * 10 9 8 12 12 C 1.48287 * 120.09060 * 180.02562 * 11 10 9 13 13 C 1.39287 * 120.15703 * 130.02595 * 12 11 10 14 14 C 1.38017 * 119.94313 * 179.97438 * 13 12 11 15 15 C 1.38440 * 120.27043 * 0.02562 * 14 13 12 16 16 C 1.38110 * 120.32707 * 0.02562 * 15 14 13 17 17 C 1.38763 * 120.04716 * 359.97438 * 16 15 14 18 18 O 1.35662 * 120.13244 * 180.02562 * 17 16 15 19 19 C 1.34804 * 117.00296 * 354.65886 * 18 17 16 20 20 H 1.07997 * 120.00086 * 5.03840 * 19 18 17 21 21 C 1.38656 * 120.00104 * 185.02888 * 19 18 17 22 22 N 1.31556 * 120.00027 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99986 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47344 * 89.99655 * 23 21 19 25 25 H 1.48503 * 109.47048 * 209.99915 * 23 21 19 26 26 H 1.48498 * 109.46787 * 329.99521 * 23 21 19 27 27 C 1.38633 * 120.01050 * 215.32545 * 7 6 4 28 28 H 1.08995 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46776 * 300.00655 * 1 2 3 30 30 H 1.09006 * 109.46977 * 59.99977 * 1 2 3 31 31 H 1.08998 * 109.46925 * 240.00297 * 2 1 3 32 32 H 1.09001 * 109.46906 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47202 * 299.99884 * 3 2 1 34 34 H 1.08995 * 109.47397 * 59.99712 * 3 2 1 35 35 H 0.97004 * 119.99293 * 355.51222 * 6 4 2 36 36 H 1.07997 * 119.91064 * 359.97438 * 8 7 6 37 37 H 1.08004 * 119.90089 * 179.97438 * 9 8 7 38 38 H 1.07989 * 119.99878 * 180.02562 * 10 9 8 39 39 H 1.07999 * 120.02886 * 359.97438 * 13 12 11 40 40 H 1.07997 * 119.86176 * 180.02562 * 14 13 12 41 41 H 1.08006 * 119.83745 * 180.28493 * 15 14 13 42 42 H 1.07997 * 119.97936 * 179.97438 * 16 15 14 43 43 H 0.96998 * 120.00093 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.09652 * 0.03868 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -0.1210 2.0288 6 7 1.7067 -2.0007 1.4438 7 6 2.2485 -2.6878 2.5358 8 6 2.4770 -2.0202 3.7332 9 6 3.0124 -2.6950 4.8136 10 6 3.3231 -4.0364 4.7104 11 6 3.0963 -4.7145 3.5135 12 6 3.4288 -6.1552 3.4007 13 6 2.4899 -7.0527 2.8978 14 6 2.8042 -8.3926 2.7943 15 6 4.0499 -8.8497 3.1891 16 6 4.9890 -7.9697 3.6903 17 6 4.6872 -6.6198 3.8002 18 8 5.6085 -5.7538 4.2918 19 6 6.7572 -6.2823 4.7590 20 1 6.9453 -7.3409 4.6571 21 6 7.6974 -5.4669 5.3702 22 7 8.8182 -5.9827 5.8266 23 14 7.3719 -3.6360 5.5470 24 1 6.6770 -3.3787 6.8338 25 1 8.6612 -2.8995 5.5247 26 1 6.5187 -3.1742 4.4227 27 6 2.5614 -4.0336 2.4223 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.0967 -2.4531 0.8402 36 1 2.2362 -0.9710 3.8192 37 1 3.1884 -2.1717 5.7418 38 1 3.7410 -4.5605 5.5570 39 1 1.5168 -6.7005 2.5891 40 1 2.0753 -9.0873 2.4038 41 1 4.2901 -9.8990 3.1007 42 1 5.9589 -8.3325 3.9969 43 1 9.4761 -5.4122 6.2539 44 1 2.3881 -4.5533 1.4915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243583972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:33 Heat of formation + Delta-G solvation = -18.529800 kcal Electronic energy + Delta-G solvation = -26779.384036 eV Core-core repulsion = 23048.057620 eV Total energy + Delta-G solvation = -3731.326416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.62541 -39.47810 -38.12903 -36.53666 -34.83273 -34.71690 -32.46253 -31.93490 -29.64030 -29.34239 -28.16336 -27.41797 -25.30928 -24.27955 -23.18991 -21.92181 -21.26099 -20.76344 -19.69967 -17.93021 -17.82735 -17.41851 -16.59786 -15.98536 -15.61200 -15.03109 -14.90318 -14.62925 -14.42534 -14.05112 -13.93013 -13.79260 -13.65283 -13.33227 -13.09435 -12.84866 -12.65162 -12.46277 -12.35228 -12.21929 -12.19243 -11.65439 -11.51989 -11.44302 -11.35588 -11.12608 -10.84752 -10.74796 -10.67991 -10.28702 -10.08351 -9.71302 -9.41396 -8.92226 -8.77228 -8.12272 -7.80750 -7.28481 -6.45417 -4.11505 1.44986 1.61207 2.18105 2.25596 2.57796 2.98046 3.23305 3.27635 3.47215 4.12083 4.23955 4.34201 4.47669 4.52886 4.60911 4.77675 5.01403 5.06227 5.14109 5.23951 5.25099 5.33706 5.50547 5.52543 5.53630 5.60526 5.70577 5.73731 5.78068 5.81643 5.85452 5.94242 5.98385 6.15533 6.29274 6.46857 6.52711 6.61233 6.68810 6.85317 6.94690 7.07108 7.16376 7.25415 7.35158 7.39231 7.55175 7.74761 7.98913 8.06186 8.89910 9.51348 10.61579 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.003946 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.050821 B = 7094.334383 C = 8826.937918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C -0.134 4.134 4 C 0.512 3.488 5 O -0.518 6.518 6 N -0.671 5.671 7 C 0.131 3.869 8 C -0.128 4.128 9 C -0.106 4.106 10 C -0.104 4.104 11 C 0.007 3.993 12 C -0.135 4.135 13 C -0.061 4.061 14 C -0.208 4.208 15 C -0.070 4.070 16 C -0.222 4.222 17 C 0.173 3.827 18 O -0.202 6.202 19 C -0.391 4.391 20 H 0.107 0.893 21 C 0.069 3.931 22 N -0.876 5.876 23 Si 0.894 3.106 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.252 1.252 27 C -0.138 4.138 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.407 0.593 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.280 0.720 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.490 7.351 -10.711 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 C -0.191 4.191 4 C 0.300 3.700 5 O -0.393 6.393 6 N -0.316 5.316 7 C 0.038 3.962 8 C -0.148 4.148 9 C -0.125 4.125 10 C -0.122 4.122 11 C 0.007 3.993 12 C -0.136 4.136 13 C -0.080 4.080 14 C -0.227 4.227 15 C -0.089 4.089 16 C -0.241 4.241 17 C 0.120 3.880 18 O -0.106 6.106 19 C -0.467 4.467 20 H 0.125 0.875 21 C -0.135 4.135 22 N -0.513 5.513 23 Si 0.718 3.282 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.176 1.176 27 C -0.158 4.158 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.243 0.757 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.153 0.847 43 H 0.090 0.910 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.743 8.128 -10.041 21.148 hybrid contribution -0.005 0.226 -0.180 0.289 sum -16.748 8.354 -10.222 21.325 Atomic orbital electron populations 1.21811 0.92787 1.02542 1.03153 1.21322 0.97610 0.98231 0.96329 1.21624 1.02061 0.93281 1.02159 1.20866 0.79918 0.81414 0.87824 1.90720 1.36795 1.65423 1.46340 1.43472 1.47566 1.12264 1.28280 1.17541 1.00060 0.91520 0.87065 1.21130 1.01931 1.00567 0.91206 1.20968 0.98825 0.94292 0.98404 1.21321 0.98786 0.94219 0.97907 1.18378 0.96015 0.92319 0.92619 1.17832 0.93016 0.91927 1.10848 1.20690 0.97292 0.92694 0.97279 1.20580 0.97720 0.95298 1.09123 1.20876 0.93202 0.98531 0.96246 1.21246 1.01747 0.92992 1.08092 1.19048 0.88051 0.88846 0.92060 1.83601 1.25211 1.33696 1.68125 1.20783 0.91908 0.96592 1.37379 0.87544 1.24424 0.94158 1.00043 0.94895 1.69638 1.07589 1.36988 1.37102 0.86339 0.78282 0.83235 0.80295 1.19602 1.20808 1.17554 1.20872 1.03209 0.92917 0.98839 0.92115 0.91886 0.91190 0.88237 0.91768 0.91939 0.91831 0.75739 0.85023 0.86058 0.85603 0.86780 0.87283 0.87143 0.84731 0.90962 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.09 37.16 0.34 -0.51 16 2 C -0.11 -0.92 3.26 -91.77 -0.30 -1.22 16 3 C -0.13 -1.13 8.48 37.16 0.32 -0.81 16 4 C 0.51 6.37 7.00 -10.99 -0.08 6.29 16 5 O -0.52 -8.65 13.42 5.56 0.07 -8.57 16 6 N -0.67 -7.86 5.26 -9.89 -0.05 -7.91 16 7 C 0.13 2.03 6.29 -83.74 -0.53 1.51 16 8 C -0.13 -2.17 8.69 -39.33 -0.34 -2.52 16 9 C -0.11 -1.88 10.03 -39.66 -0.40 -2.28 16 10 C -0.10 -2.02 8.78 -39.20 -0.34 -2.36 16 11 C 0.01 0.14 5.28 -104.93 -0.55 -0.41 16 12 C -0.13 -2.65 5.49 -104.73 -0.57 -3.23 16 13 C -0.06 -1.02 9.51 -39.27 -0.37 -1.39 16 14 C -0.21 -3.34 10.03 -39.59 -0.40 -3.74 16 15 C -0.07 -1.23 10.03 -39.55 -0.40 -1.63 16 16 C -0.22 -4.68 9.16 -39.43 -0.36 -5.04 16 17 C 0.17 3.94 6.56 -38.74 -0.25 3.68 16 18 O -0.20 -5.23 6.93 0.40 0.00 -5.23 16 19 C -0.39 -10.87 9.95 30.89 0.31 -10.56 16 20 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 21 C 0.07 1.93 5.49 -17.52 -0.10 1.83 16 22 N -0.88 -25.27 13.96 55.48 0.77 -24.49 16 23 Si 0.89 22.11 28.62 -169.99 -4.86 17.24 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.25 -6.44 7.11 56.52 0.40 -6.04 16 27 C -0.14 -2.23 9.43 -39.04 -0.37 -2.60 16 28 H 0.06 0.28 7.47 -51.93 -0.39 -0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 35 H 0.41 3.24 8.12 -40.82 -0.33 2.91 16 36 H 0.13 2.21 6.22 -52.49 -0.33 1.88 16 37 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 38 H 0.13 2.57 7.67 -52.49 -0.40 2.17 16 39 H 0.11 1.56 8.04 -52.49 -0.42 1.14 16 40 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 42 H 0.14 2.97 5.64 -52.49 -0.30 2.68 16 43 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.12 1.69 8.05 -52.48 -0.42 1.26 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -32.23 369.94 -8.70 -40.93 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.81 Total: 7.43 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -4.40 Total: -24.98 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.72 Total: -32.40 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.08 Total: -13.80 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.86 Total: 17.24 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.23 -8.70 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243583972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.403 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds