Wall clock time and date at job start Tue Mar 31 2020 14:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47144 * 2 1 4 4 C 1.50699 * 109.46792 * 120.00000 * 2 1 3 5 5 O 1.21282 * 119.99734 * 239.99622 * 4 2 1 6 6 N 1.34775 * 120.00274 * 60.00120 * 4 2 1 7 7 C 1.39934 * 120.00307 * 175.51169 * 6 4 2 8 8 C 1.38983 * 120.00691 * 35.13123 * 7 6 4 9 9 C 1.38184 * 120.18170 * 180.02562 * 8 7 6 10 10 C 1.38070 * 120.20687 * 359.97438 * 9 8 7 11 11 C 1.39419 * 120.00947 * 359.97426 * 10 9 8 12 12 C 1.48287 * 120.09060 * 180.02562 * 11 10 9 13 13 C 1.39287 * 120.15703 * 130.02595 * 12 11 10 14 14 C 1.38017 * 119.94313 * 179.97438 * 13 12 11 15 15 C 1.38440 * 120.27043 * 0.02562 * 14 13 12 16 16 C 1.38110 * 120.32707 * 0.02562 * 15 14 13 17 17 C 1.38763 * 120.04716 * 359.97438 * 16 15 14 18 18 O 1.35662 * 120.13244 * 180.02562 * 17 16 15 19 19 C 1.34804 * 117.00296 * 354.65886 * 18 17 16 20 20 H 1.07997 * 120.00086 * 5.03840 * 19 18 17 21 21 C 1.38656 * 120.00104 * 185.02888 * 19 18 17 22 22 N 1.31556 * 120.00027 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99986 * 0.02562 * 21 19 18 24 24 H 1.48491 * 109.47344 * 89.99655 * 23 21 19 25 25 H 1.48503 * 109.47048 * 209.99915 * 23 21 19 26 26 H 1.48498 * 109.46787 * 329.99521 * 23 21 19 27 27 C 1.38633 * 120.01050 * 215.32545 * 7 6 4 28 28 H 1.08995 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46776 * 300.00655 * 1 2 3 30 30 H 1.09006 * 109.46977 * 59.99977 * 1 2 3 31 31 H 1.08998 * 109.46925 * 240.00297 * 2 1 3 32 32 H 1.09001 * 109.46906 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47202 * 299.99884 * 3 2 1 34 34 H 1.08995 * 109.47397 * 59.99712 * 3 2 1 35 35 H 0.97004 * 119.99293 * 355.51222 * 6 4 2 36 36 H 1.07997 * 119.91064 * 359.97438 * 8 7 6 37 37 H 1.08004 * 119.90089 * 179.97438 * 9 8 7 38 38 H 1.07989 * 119.99878 * 180.02562 * 10 9 8 39 39 H 1.07999 * 120.02886 * 359.97438 * 13 12 11 40 40 H 1.07997 * 119.86176 * 180.02562 * 14 13 12 41 41 H 1.08006 * 119.83745 * 180.28493 * 15 14 13 42 42 H 1.07997 * 119.97936 * 179.97438 * 16 15 14 43 43 H 0.96998 * 120.00093 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.09652 * 0.03868 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -0.1210 2.0288 6 7 1.7067 -2.0007 1.4438 7 6 2.2485 -2.6878 2.5358 8 6 2.4770 -2.0202 3.7332 9 6 3.0124 -2.6950 4.8136 10 6 3.3231 -4.0364 4.7104 11 6 3.0963 -4.7145 3.5135 12 6 3.4288 -6.1552 3.4007 13 6 2.4899 -7.0527 2.8978 14 6 2.8042 -8.3926 2.7943 15 6 4.0499 -8.8497 3.1891 16 6 4.9890 -7.9697 3.6903 17 6 4.6872 -6.6198 3.8002 18 8 5.6085 -5.7538 4.2918 19 6 6.7572 -6.2823 4.7590 20 1 6.9453 -7.3409 4.6571 21 6 7.6974 -5.4669 5.3702 22 7 8.8182 -5.9827 5.8266 23 14 7.3719 -3.6360 5.5470 24 1 6.6770 -3.3787 6.8338 25 1 8.6612 -2.8995 5.5247 26 1 6.5187 -3.1742 4.4227 27 6 2.5614 -4.0336 2.4223 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.0967 -2.4531 0.8402 36 1 2.2362 -0.9710 3.8192 37 1 3.1884 -2.1717 5.7418 38 1 3.7410 -4.5605 5.5570 39 1 1.5168 -6.7005 2.5891 40 1 2.0753 -9.0873 2.4038 41 1 4.2901 -9.8990 3.1007 42 1 5.9589 -8.3325 3.9969 43 1 9.4761 -5.4122 6.2539 44 1 2.3881 -4.5533 1.4915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243583972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:32 Heat of formation + Delta-G solvation = -36.903833 kcal Electronic energy + Delta-G solvation = -26780.180794 eV Core-core repulsion = 23048.057620 eV Total energy + Delta-G solvation = -3732.123174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73309 -41.01229 -39.48481 -38.14206 -35.94470 -35.49234 -34.48970 -33.37312 -30.94117 -30.83094 -29.60753 -27.96920 -27.25714 -25.24057 -24.56672 -23.26250 -22.76870 -22.02602 -20.76748 -19.79490 -19.25876 -18.50188 -17.96646 -17.27052 -16.75086 -16.65799 -16.27072 -15.87477 -15.71848 -15.52817 -15.36888 -15.29640 -14.88190 -14.59015 -14.34422 -14.19712 -14.08996 -13.82566 -13.62891 -13.24438 -13.12616 -12.95435 -12.86156 -12.62452 -12.50363 -12.47645 -12.16630 -12.08129 -12.00285 -11.94335 -11.41618 -11.27618 -10.95260 -10.75144 -10.20516 -9.49181 -9.19077 -8.85133 -8.54745 -6.23610 0.03046 0.31021 0.67513 0.81063 1.24565 1.26118 1.46330 1.56338 2.01357 2.21655 2.70965 2.82596 3.07880 3.15252 3.56531 3.73413 3.92461 3.99615 4.03794 4.17835 4.21557 4.27877 4.33568 4.43321 4.51800 4.56507 4.60477 4.72681 4.76936 4.88499 4.90960 4.93089 4.96697 5.07012 5.18125 5.27457 5.29655 5.32986 5.36398 5.37781 5.50115 5.60001 5.64343 5.74558 5.81694 5.89638 6.05829 6.24444 6.42005 6.81770 7.12555 7.59299 8.57022 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011881 B = 0.003946 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.050821 B = 7094.334383 C = 8826.937918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C -0.135 4.135 4 C 0.506 3.494 5 O -0.567 6.567 6 N -0.657 5.657 7 C 0.139 3.861 8 C -0.136 4.136 9 C -0.114 4.114 10 C -0.128 4.128 11 C -0.012 4.012 12 C -0.133 4.133 13 C -0.056 4.056 14 C -0.180 4.180 15 C -0.071 4.071 16 C -0.243 4.243 17 C 0.133 3.867 18 O -0.232 6.232 19 C -0.393 4.393 20 H 0.086 0.914 21 C 0.022 3.978 22 N -0.920 5.920 23 Si 0.949 3.051 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.269 1.269 27 C -0.130 4.130 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.429 0.571 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.142 0.858 42 H 0.109 0.891 43 H 0.284 0.716 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.616 7.259 -13.983 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.193 4.193 4 C 0.296 3.704 5 O -0.444 6.444 6 N -0.303 5.303 7 C 0.045 3.955 8 C -0.156 4.156 9 C -0.132 4.132 10 C -0.147 4.147 11 C -0.013 4.013 12 C -0.135 4.135 13 C -0.073 4.073 14 C -0.198 4.198 15 C -0.089 4.089 16 C -0.262 4.262 17 C 0.083 3.917 18 O -0.138 6.138 19 C -0.469 4.469 20 H 0.103 0.897 21 C -0.177 4.177 22 N -0.561 5.561 23 Si 0.773 3.227 24 H -0.187 1.187 25 H -0.196 1.196 26 H -0.194 1.194 27 C -0.150 4.150 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.143 0.857 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.268 0.732 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.120 0.880 39 H 0.174 0.826 40 H 0.175 0.825 41 H 0.159 0.841 42 H 0.127 0.873 43 H 0.093 0.907 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.940 8.002 -13.358 26.095 hybrid contribution 0.955 0.112 0.656 1.164 sum -19.985 8.114 -12.702 25.032 Atomic orbital electron populations 1.21834 0.90549 1.03844 1.03714 1.21396 0.99238 0.97295 0.94592 1.21652 1.00780 0.93987 1.02839 1.21808 0.78834 0.81211 0.88536 1.90709 1.38988 1.66432 1.48300 1.43428 1.47414 1.12132 1.27370 1.17610 0.98811 0.91522 0.87576 1.21245 1.02046 1.00573 0.91771 1.21107 0.98880 0.93818 0.99414 1.21252 1.00405 0.95028 0.98048 1.18514 0.97154 0.92318 0.93329 1.18201 0.92206 0.93177 1.09878 1.21215 0.98045 0.92482 0.95606 1.21182 0.97303 0.95818 1.05477 1.21258 0.93110 0.99512 0.95047 1.21296 1.01979 0.93356 1.09549 1.19643 0.89086 0.89526 0.93464 1.83571 1.25229 1.34328 1.70703 1.20726 0.93061 0.95851 1.37260 0.89673 1.25023 0.94192 1.03282 0.95234 1.69703 1.08678 1.38166 1.39525 0.85518 0.78056 0.79414 0.79757 1.18697 1.19616 1.19361 1.21053 1.01949 0.93043 0.98934 0.90475 0.93016 0.88994 0.85709 0.93842 0.89083 0.93311 0.73161 0.85089 0.85088 0.88008 0.82575 0.82473 0.84060 0.87278 0.90655 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.09 71.98 0.65 -0.42 16 2 C -0.10 -1.35 3.26 -11.54 -0.04 -1.39 16 3 C -0.13 -2.03 8.48 71.98 0.61 -1.42 16 4 C 0.51 11.54 7.00 87.66 0.61 12.16 16 5 O -0.57 -18.69 13.42 -3.04 -0.04 -18.73 16 6 N -0.66 -13.36 5.26 -303.60 -1.60 -14.95 16 7 C 0.14 4.03 6.29 38.12 0.24 4.27 16 8 C -0.14 -4.56 8.69 22.44 0.20 -4.37 16 9 C -0.11 -4.10 10.03 22.22 0.22 -3.88 16 10 C -0.13 -5.14 8.78 22.51 0.20 -4.95 16 11 C -0.01 -0.46 5.28 -20.06 -0.11 -0.57 16 12 C -0.13 -5.10 5.49 -19.93 -0.11 -5.21 16 13 C -0.06 -1.61 9.51 22.47 0.21 -1.39 16 14 C -0.18 -4.83 10.03 22.27 0.22 -4.61 16 15 C -0.07 -2.32 10.03 22.29 0.22 -2.09 16 16 C -0.24 -10.47 9.16 22.36 0.20 -10.27 16 17 C 0.13 6.19 6.56 22.81 0.15 6.34 16 18 O -0.23 -12.66 6.93 -21.50 -0.15 -12.81 16 19 C -0.39 -23.32 9.95 67.92 0.68 -22.65 16 20 H 0.09 5.25 5.44 -2.91 -0.02 5.23 16 21 C 0.02 1.28 5.49 84.83 0.47 1.75 16 22 N -0.92 -55.97 13.96 21.61 0.30 -55.67 16 23 Si 0.95 48.16 28.62 68.60 1.96 50.12 16 24 H -0.26 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.27 -14.21 7.11 99.48 0.71 -13.51 16 27 C -0.13 -3.86 9.43 22.62 0.21 -3.64 16 28 H 0.08 0.35 7.47 -2.39 -0.02 0.33 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.04 0.83 8.10 -2.39 -0.02 0.81 16 33 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 35 H 0.43 4.87 8.12 -92.71 -0.75 4.11 16 36 H 0.13 4.41 6.22 -2.91 -0.02 4.39 16 37 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 38 H 0.10 4.47 7.67 -2.92 -0.02 4.45 16 39 H 0.16 3.25 8.04 -2.91 -0.02 3.23 16 40 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 42 H 0.11 5.20 5.64 -2.91 -0.02 5.18 16 43 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 44 H 0.15 3.51 8.05 -2.91 -0.02 3.49 16 Total: -1.00 -77.08 369.94 5.60 -71.48 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.27 Total: 22.89 kcal Atomic # 6 Polarization: -47.18 SS G_CDS: 4.85 Total: -42.33 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -1.29 Total: -70.62 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.19 Total: -31.54 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 1.96 Total: 50.12 kcal Total: -77.08 5.60 -71.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243583972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.575 kcal (2) G-P(sol) polarization free energy of solvation -77.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds