Wall clock time and date at job start Tue Mar 31 2020 13:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47509 * 2 1 4 4 C 1.52994 * 109.47202 * 239.99673 * 2 1 3 5 5 N 1.46508 * 109.46922 * 119.99753 * 2 1 3 6 6 S 1.65600 * 119.99706 * 50.60244 * 5 2 1 7 7 O 1.42097 * 106.40282 * 47.48905 * 6 5 2 8 8 O 1.42097 * 106.40028 * 180.40775 * 6 5 2 9 9 C 1.76197 * 107.21837 * 293.94979 * 6 5 2 10 10 C 1.38259 * 119.99941 * 280.15365 * 9 6 5 11 11 C 1.38215 * 120.00038 * 179.78563 * 10 9 6 12 12 C 1.38261 * 119.99715 * 0.46969 * 11 10 9 13 13 C 1.38211 * 120.00004 * 359.76577 * 12 11 10 14 14 C 1.50701 * 120.00094 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46994 * 270.02044 * 14 13 12 16 16 C 1.52998 * 109.47061 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46763 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00491 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99795 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00021 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99835 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47291 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47242 * 120.00230 * 21 19 17 24 24 H 1.48507 * 109.46757 * 239.99552 * 21 19 17 25 25 C 1.38214 * 120.00235 * 100.42991 * 9 6 5 26 26 H 1.08999 * 109.47060 * 289.87381 * 1 2 3 27 27 H 1.09004 * 109.46554 * 49.86441 * 1 2 3 28 28 H 1.08991 * 109.47105 * 169.86615 * 1 2 3 29 29 H 1.09000 * 109.47483 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46893 * 300.00246 * 3 2 1 31 31 H 1.09008 * 109.47221 * 59.99640 * 3 2 1 32 32 H 1.08997 * 109.47638 * 307.82329 * 4 2 1 33 33 H 1.08999 * 109.47155 * 67.82323 * 4 2 1 34 34 H 1.09000 * 109.47487 * 187.82222 * 4 2 1 35 35 H 0.96999 * 120.00001 * 230.32698 * 5 2 1 36 36 H 1.08004 * 119.99852 * 0.02562 * 10 9 6 37 37 H 1.07996 * 120.00205 * 180.25517 * 11 10 9 38 38 H 1.07999 * 119.99478 * 179.78610 * 12 11 10 39 39 H 1.09006 * 109.47218 * 30.01643 * 14 13 12 40 40 H 1.08998 * 109.47480 * 150.01501 * 14 13 12 41 41 H 1.09003 * 109.47150 * 300.00240 * 15 14 13 42 42 H 1.09000 * 109.46954 * 59.99293 * 15 14 13 43 43 H 1.08997 * 109.47276 * 299.99700 * 16 15 14 44 44 H 1.08999 * 109.47155 * 60.00398 * 16 15 14 45 45 H 0.97005 * 120.00271 * 180.02562 * 20 19 17 46 46 H 1.08004 * 119.99608 * 359.97438 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1963 6 16 1.4360 -2.1924 1.5810 7 8 1.4856 -2.9601 0.3863 8 8 2.0892 -2.5804 2.7818 9 6 -0.2696 -2.0038 1.9808 10 6 -0.6398 -1.5434 3.2308 11 6 -1.9776 -1.3912 3.5429 12 6 -2.9459 -1.7087 2.6084 13 6 -2.5759 -2.1735 1.3605 14 6 -3.6313 -2.5190 0.3418 15 6 -4.0227 -3.9904 0.4919 16 6 -5.0947 -4.3410 -0.5420 17 6 -5.4798 -5.7905 -0.3944 18 1 -5.0076 -6.4006 0.3614 19 6 -6.4350 -6.3380 -1.2245 20 7 -7.0104 -5.5950 -2.1445 21 14 -6.9129 -8.1344 -1.0411 22 1 -6.1259 -8.7462 0.0596 23 1 -8.3613 -8.2320 -0.7282 24 1 -6.6311 -8.8535 -2.3096 25 6 -1.2376 -2.3215 1.0468 26 1 -0.3633 0.3494 0.9665 27 1 -0.3632 0.6625 -0.7857 28 1 -0.3633 -1.0115 -0.1808 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.5670 -1.7006 -1.3219 33 1 1.7954 -0.1331 -2.1336 34 1 3.1210 -0.8440 -1.1820 35 1 2.6856 -0.2699 1.7608 36 1 0.1166 -1.2989 3.9620 37 1 -2.2667 -1.0277 4.5179 38 1 -3.9913 -1.5930 2.8536 39 1 -4.5085 -1.8917 0.5003 40 1 -3.2386 -2.3479 -0.6605 41 1 -3.1456 -4.6178 0.3335 42 1 -4.4154 -4.1615 1.4943 43 1 -5.9717 -3.7137 -0.3830 44 1 -4.7023 -4.1700 -1.5444 45 1 -7.6828 -5.9800 -2.7283 46 1 -0.9485 -2.6850 0.0717 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250064932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:08 Heat of formation + Delta-G solvation = -93.153268 kcal Electronic energy + Delta-G solvation = -25989.111949 eV Core-core repulsion = 22389.993568 eV Total energy + Delta-G solvation = -3599.118381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.56708 -39.02429 -38.09157 -36.97555 -36.52080 -34.59884 -32.52529 -32.05726 -31.82306 -28.59824 -28.17945 -28.07567 -25.50131 -24.26296 -22.87739 -21.85179 -21.55948 -20.11168 -18.79611 -18.57665 -18.23295 -17.26344 -17.03633 -16.56998 -16.50731 -15.88584 -15.38732 -15.18893 -15.13037 -14.81479 -14.63988 -14.45835 -14.19022 -13.98480 -13.73256 -13.36821 -13.26093 -13.19304 -13.14058 -13.05270 -12.90494 -12.69879 -12.61764 -12.54734 -12.44886 -12.40516 -12.20864 -12.16911 -11.76828 -11.57082 -11.44254 -11.33149 -11.16674 -10.56766 -10.56306 -10.16579 -9.69700 -8.21486 -6.32136 -0.63811 -0.15126 0.32330 1.37859 1.38676 1.51818 1.98235 2.39373 2.48557 2.77431 3.11458 3.31310 3.73874 3.78855 3.86872 3.97949 4.05172 4.06719 4.22470 4.29416 4.33397 4.49533 4.51460 4.64265 4.72525 4.74704 4.76531 4.89387 4.97667 4.99495 5.02231 5.04674 5.08188 5.20115 5.20812 5.23644 5.31597 5.32691 5.42160 5.51886 5.53879 5.54671 5.76459 5.84138 5.90543 6.16025 6.25081 6.84654 7.36948 8.90197 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.002865 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.253597 B = 9770.173963 C = 9983.567792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.175 3.825 3 C -0.145 4.145 4 C -0.185 4.185 5 N -1.094 6.094 6 S 2.710 3.290 7 O -0.984 6.984 8 O -0.990 6.990 9 C -0.676 4.676 10 C -0.032 4.032 11 C -0.134 4.134 12 C -0.065 4.065 13 C -0.102 4.102 14 C -0.076 4.076 15 C -0.093 4.093 16 C 0.024 3.976 17 C -0.545 4.545 18 H 0.055 0.945 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.962 3.038 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.278 1.278 25 C -0.026 4.026 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.429 0.571 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.143 0.857 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.041 0.959 42 H 0.051 0.949 43 H -0.002 1.002 44 H -0.007 1.007 45 H 0.264 0.736 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.768 18.876 9.266 28.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.088 3.912 3 C -0.203 4.203 4 C -0.244 4.244 5 N -0.858 5.858 6 S 2.801 3.199 7 O -0.974 6.974 8 O -0.980 6.980 9 C -0.764 4.764 10 C -0.051 4.051 11 C -0.153 4.153 12 C -0.083 4.083 13 C -0.103 4.103 14 C -0.113 4.113 15 C -0.131 4.131 16 C -0.013 4.013 17 C -0.583 4.583 18 H 0.073 0.927 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.787 3.213 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.203 1.203 25 C -0.046 4.046 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.266 0.734 36 H 0.172 0.828 37 H 0.179 0.821 38 H 0.161 0.839 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.016 0.984 44 H 0.011 0.989 45 H 0.073 0.927 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 19.001 18.013 9.025 27.694 hybrid contribution -1.010 -0.687 -0.048 1.222 sum 17.991 17.327 8.978 26.542 Atomic orbital electron populations 1.23010 0.94565 1.03781 1.04471 1.20274 0.93333 0.94428 0.83213 1.22050 1.02235 0.92088 1.03949 1.22627 1.02332 1.01735 0.97683 1.55402 1.55719 1.38110 1.36537 1.01130 0.73396 0.73008 0.72370 1.93546 1.86762 1.69114 1.47937 1.93542 1.74451 1.81595 1.48452 1.30731 1.24155 1.17763 1.03716 1.21096 0.98065 0.92554 0.93399 1.21570 0.92200 1.00755 1.00732 1.21667 1.01230 0.93374 0.92021 1.20111 0.94065 0.99704 0.96399 1.20630 0.96847 0.96531 0.97340 1.21444 0.98012 0.94541 0.99116 1.19027 0.93491 0.94974 0.93808 1.21738 1.21791 0.97426 1.17329 0.92701 1.25943 0.96183 1.02738 0.94842 1.70087 1.27924 1.37953 1.21173 0.85445 0.78187 0.79440 0.78266 1.18938 1.20067 1.20324 1.20759 0.92345 0.93337 0.98121 0.90764 0.89082 0.92319 0.90899 0.89937 0.90918 0.91958 0.89921 0.91641 0.73374 0.82783 0.82093 0.83910 0.90290 0.91216 0.93971 0.93049 0.98408 0.98867 0.92720 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.21 6.78 71.98 0.49 -2.72 16 2 C 0.18 2.46 1.14 3.60 0.00 2.47 16 3 C -0.14 -1.19 8.57 71.98 0.62 -0.57 16 4 C -0.19 -3.13 8.21 71.98 0.59 -2.54 16 5 N -1.09 -16.26 5.53 -152.21 -0.84 -17.10 16 6 S 2.71 62.85 5.39 -56.49 -0.30 62.55 16 7 O -0.98 -29.18 14.31 -128.00 -1.83 -31.01 16 8 O -0.99 -27.32 17.58 -128.00 -2.25 -29.57 16 9 C -0.68 -15.81 3.99 22.27 0.09 -15.72 16 10 C -0.03 -0.63 9.53 22.27 0.21 -0.42 16 11 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 12 C -0.06 -1.47 9.70 22.27 0.22 -1.25 16 13 C -0.10 -2.81 5.13 -19.87 -0.10 -2.91 16 14 C -0.08 -2.48 5.34 29.85 0.16 -2.32 16 15 C -0.09 -3.90 5.13 30.59 0.16 -3.74 16 16 C 0.02 1.28 4.97 29.85 0.15 1.43 16 17 C -0.54 -31.76 9.11 25.60 0.23 -31.52 16 18 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 19 C 0.00 0.04 5.46 84.66 0.46 0.51 16 20 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 21 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 25 C -0.03 -0.71 6.42 22.27 0.14 -0.57 16 26 H 0.07 1.12 7.48 -2.39 -0.02 1.10 16 27 H 0.09 1.20 8.11 -2.38 -0.02 1.19 16 28 H 0.06 1.18 3.85 -2.39 -0.01 1.17 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.06 1.42 5.97 -2.39 -0.01 1.40 16 33 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.43 4.08 8.63 -96.75 -0.83 3.24 16 36 H 0.15 2.27 7.87 -2.91 -0.02 2.25 16 37 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.08 2.41 8.09 -2.38 -0.02 2.39 16 40 H 0.07 2.25 8.09 -2.39 -0.02 2.23 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 45 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 46 H 0.13 3.76 6.69 -2.91 -0.02 3.74 16 Total: -1.00 -75.11 376.71 0.86 -74.25 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.13 Total: 12.61 kcal Atomic # 6 Polarization: -65.78 SS G_CDS: 3.64 Total: -62.14 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -0.56 Total: -73.85 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -4.08 Total: -60.58 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 62.85 SS G_CDS: -0.30 Total: 62.55 kcal Total: -75.11 0.86 -74.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250064932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.898 kcal (2) G-P(sol) polarization free energy of solvation -75.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds