Wall clock time and date at job start Tue Mar 31 2020 14:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47409 * 2 1 4 4 H 1.09001 * 109.47049 * 305.75002 * 3 2 1 5 5 C 1.50701 * 109.47169 * 185.74630 * 3 2 1 6 6 H 1.07996 * 120.00397 * 245.08381 * 5 3 2 7 7 C 1.37875 * 119.99690 * 65.08324 * 5 3 2 8 8 N 1.31512 * 120.00014 * 190.45283 * 7 5 3 9 9 Si 1.86804 * 120.00335 * 10.45802 * 7 5 3 10 10 H 1.48501 * 109.46980 * 86.57824 * 9 7 5 11 11 H 1.48493 * 109.47395 * 206.58314 * 9 7 5 12 12 H 1.48503 * 109.46537 * 326.58391 * 9 7 5 13 13 N 1.46900 * 109.46971 * 65.74721 * 3 2 1 14 14 C 1.46904 * 110.99932 * 207.45064 * 13 3 2 15 15 H 1.08997 * 109.47198 * 327.06610 * 14 13 3 16 16 C 1.53003 * 109.46435 * 87.06721 * 14 13 3 17 17 O 1.42899 * 109.47475 * 63.77496 * 16 14 13 18 18 C 1.53004 * 109.47305 * 207.06361 * 14 13 3 19 19 H 1.08999 * 109.46802 * 180.02562 * 18 14 13 20 20 O 1.42897 * 109.47121 * 300.00397 * 18 14 13 21 21 C 1.50701 * 109.46685 * 60.00234 * 18 14 13 22 22 C 1.38301 * 119.92327 * 279.72669 * 21 18 14 23 23 C 1.38081 * 120.08237 * 179.72942 * 22 21 18 24 24 C 1.38979 * 119.91469 * 0.54530 * 23 22 21 25 25 S 1.76199 * 120.07614 * 179.74805 * 24 23 22 26 26 C 1.81402 * 103.00390 * 359.97438 * 25 24 23 27 27 C 1.38967 * 119.84068 * 359.72506 * 24 23 22 28 28 C 1.38077 * 119.92373 * 0.02562 * 27 24 23 29 29 H 1.08995 * 109.46658 * 304.26534 * 1 2 3 30 30 H 1.08998 * 109.46556 * 64.26358 * 1 2 3 31 31 H 1.08993 * 109.47042 * 184.26477 * 1 2 3 32 32 H 1.08997 * 109.46939 * 239.99375 * 2 1 3 33 33 H 1.09001 * 109.46849 * 120.00305 * 2 1 3 34 34 H 0.97007 * 120.00226 * 180.02562 * 8 7 5 35 35 H 1.00896 * 111.00505 * 331.40703 * 13 3 2 36 36 H 1.09011 * 109.46677 * 183.77322 * 16 14 13 37 37 H 1.08991 * 109.47408 * 303.77227 * 16 14 13 38 38 H 0.96698 * 113.99960 * 179.97438 * 17 16 14 39 39 H 0.96704 * 113.99759 * 59.99691 * 20 18 14 40 40 H 1.08003 * 119.95702 * 0.02562 * 22 21 18 41 41 H 1.07998 * 120.04083 * 180.27356 * 23 22 21 42 42 H 1.09003 * 109.46449 * 299.99937 * 26 25 24 43 43 H 1.08997 * 109.47092 * 59.99119 * 26 25 24 44 44 H 1.08992 * 109.47413 * 179.97438 * 26 25 24 45 45 H 1.08007 * 120.03843 * 179.97438 * 27 24 23 46 46 H 1.08001 * 119.96291 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5952 1.9851 -0.8340 5 6 3.5404 1.4447 -0.1423 6 1 4.1587 1.8110 0.6638 7 6 4.1236 0.9792 -1.3016 8 7 5.4236 0.7872 -1.3526 9 14 3.0672 0.6211 -2.8001 10 1 2.8962 1.8645 -3.5937 11 1 3.7282 -0.4129 -3.6361 12 1 1.7372 0.1271 -2.3614 13 7 1.6670 2.0937 1.2628 14 6 1.5294 3.5455 1.0857 15 1 2.2395 3.8887 0.3333 16 6 0.1057 3.8709 0.6296 17 8 -0.8191 3.5009 1.6542 18 6 1.8132 4.2504 2.4138 19 1 1.7106 5.3276 2.2824 20 8 0.8823 3.8005 3.4002 21 6 3.2154 3.9298 2.8630 22 6 3.4807 2.7260 3.4902 23 6 4.7654 2.4265 3.8982 24 6 5.7904 3.3412 3.6880 25 16 7.4300 2.9661 4.2129 26 6 7.2559 1.3173 4.9489 27 6 5.5190 4.5521 3.0625 28 6 4.2329 4.8427 2.6526 29 1 -0.3632 0.5786 0.8493 30 1 -0.3632 0.4463 -0.9257 31 1 -0.3633 -1.0248 0.0764 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 5.8340 0.4600 -2.1684 35 1 0.8209 1.6937 1.6398 36 1 0.0224 4.9401 0.4337 37 1 -0.1198 3.3161 -0.2810 38 1 -1.7433 3.6796 1.4331 39 1 0.9174 2.8490 3.5690 40 1 2.6828 2.0174 3.6568 41 1 4.9726 1.4844 4.3839 42 1 6.5504 1.3626 5.7787 43 1 6.8871 0.6205 4.1963 44 1 8.2252 0.9781 5.3138 45 1 6.3131 5.2655 2.8979 46 1 4.0214 5.7834 2.1660 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:47 Heat of formation + Delta-G solvation = -66.991561 kcal Electronic energy + Delta-G solvation = -27132.651474 eV Core-core repulsion = 23534.667549 eV Total energy + Delta-G solvation = -3597.983924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.45048 -37.77896 -35.74224 -35.66375 -32.48888 -31.86477 -31.05294 -30.41848 -28.79610 -28.31554 -26.54501 -25.27621 -22.67439 -22.13051 -21.55233 -20.12523 -19.76862 -17.54502 -17.19802 -16.76733 -16.41485 -15.81842 -15.26249 -14.79622 -14.62262 -14.43389 -14.19793 -13.91113 -13.63580 -13.54741 -13.30863 -13.17092 -12.83310 -12.69468 -12.43714 -12.25579 -12.19714 -11.82326 -11.63102 -11.52155 -11.42676 -11.07708 -10.86708 -10.72548 -10.37239 -10.24759 -10.16919 -9.98415 -9.84676 -9.48035 -9.32138 -9.12347 -8.97383 -8.47535 -8.42551 -7.39042 -6.98936 -6.02513 -3.97203 1.68882 1.84097 1.94265 2.69858 3.24376 3.32752 3.36439 4.15324 4.41563 4.43671 4.96596 5.01831 5.12915 5.18402 5.22792 5.24929 5.26972 5.35270 5.39806 5.57295 5.68009 5.77576 5.80046 5.82415 5.85795 5.86841 5.98922 6.06235 6.10387 6.26443 6.31298 6.50399 6.51860 6.61629 6.72477 6.73486 6.79536 6.92246 7.12967 7.20147 7.40667 7.76431 7.80521 7.92342 8.13985 8.25719 8.76613 9.16078 9.62369 11.10476 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.005630 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.026633 B = 4972.555505 C = 6744.937485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.136 4.136 3 C 0.197 3.803 4 H -0.007 1.007 5 C -0.494 4.494 6 H 0.084 0.916 7 C 0.071 3.929 8 N -0.894 5.894 9 Si 0.850 3.150 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.248 1.248 13 N -0.663 5.663 14 C 0.066 3.934 15 H 0.101 0.899 16 C 0.050 3.950 17 O -0.550 6.550 18 C 0.167 3.833 19 H 0.093 0.907 20 O -0.542 6.542 21 C -0.094 4.094 22 C -0.045 4.045 23 C -0.129 4.129 24 C -0.080 4.080 25 S -0.138 6.138 26 C -0.140 4.140 27 C -0.103 4.103 28 C -0.098 4.098 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.261 0.739 35 H 0.328 0.672 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.366 0.634 39 H 0.372 0.628 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.119 0.881 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.245 4.586 9.103 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.174 4.174 3 C 0.088 3.912 4 H 0.010 0.990 5 C -0.532 4.532 6 H 0.102 0.898 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.678 3.322 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.173 1.173 13 N -0.295 5.295 14 C -0.045 4.045 15 H 0.119 0.881 16 C -0.029 4.029 17 O -0.353 6.353 18 C 0.107 3.893 19 H 0.111 0.889 20 O -0.347 6.347 21 C -0.097 4.097 22 C -0.064 4.064 23 C -0.152 4.152 24 C -0.193 4.193 25 S 0.103 5.897 26 C -0.308 4.308 27 C -0.126 4.126 28 C -0.118 4.118 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.148 0.852 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.211 0.789 39 H 0.220 0.780 40 H 0.141 0.859 41 H 0.134 0.866 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.121 0.879 45 H 0.137 0.863 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.922 5.559 9.496 11.682 hybrid contribution -2.607 -1.446 -2.152 3.677 sum -6.529 4.113 7.344 10.653 Atomic orbital electron populations 1.21912 0.98605 1.00239 1.00492 1.22265 0.92498 1.00347 1.02304 1.19494 0.96715 0.89330 0.85614 0.98999 1.21016 0.88966 1.41103 1.02157 0.89845 1.24916 0.94562 0.95269 0.98279 1.69938 1.09902 1.45951 1.27467 0.87530 0.82321 0.78198 0.84102 1.20996 1.21685 1.17282 1.60501 1.37976 1.00628 1.30418 1.22330 0.92746 0.91757 0.97683 0.88112 1.22877 0.91798 0.98020 0.90247 1.86612 1.18480 1.87144 1.43083 1.20663 0.84289 0.97232 0.87121 0.88916 1.86511 1.59929 1.28628 1.59674 1.20315 0.96093 0.94765 0.98503 1.20572 0.95716 0.95127 0.95024 1.21007 0.93095 0.98281 1.02849 1.21489 0.95671 0.98206 1.03897 1.85175 1.09966 1.21035 1.73480 1.23602 1.06346 0.97145 1.03737 1.20503 0.96742 0.95576 0.99807 1.20763 0.92298 0.99116 0.99583 0.93033 0.94147 0.93959 0.91593 0.92042 0.92939 0.85243 0.94276 0.94118 0.78946 0.78033 0.85850 0.86563 0.90093 0.89380 0.87949 0.86334 0.86339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.82 37.16 0.36 -2.19 16 2 C -0.14 -2.75 4.76 -26.73 -0.13 -2.87 16 3 C 0.20 4.23 1.38 -68.87 -0.10 4.13 16 4 H -0.01 -0.17 6.10 -51.93 -0.32 -0.48 16 5 C -0.49 -13.09 9.10 -34.44 -0.31 -13.40 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 7 C 0.07 1.98 5.39 -17.82 -0.10 1.88 16 8 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 9 Si 0.85 20.49 25.85 -169.99 -4.39 16.09 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.25 -5.53 5.10 56.52 0.29 -5.24 16 13 N -0.66 -11.87 4.07 -100.95 -0.41 -12.28 16 14 C 0.07 1.09 2.12 -67.71 -0.14 0.95 16 15 H 0.10 1.91 7.70 -51.93 -0.40 1.51 16 16 C 0.05 0.70 6.69 37.16 0.25 0.95 16 17 O -0.55 -7.06 10.79 -57.77 -0.62 -7.68 16 18 C 0.17 2.56 3.10 -27.88 -0.09 2.47 16 19 H 0.09 1.32 8.00 -51.93 -0.42 0.91 16 20 O -0.54 -8.26 11.05 -57.77 -0.64 -8.90 16 21 C -0.09 -1.57 4.89 -104.57 -0.51 -2.08 16 22 C -0.04 -0.76 8.36 -39.62 -0.33 -1.09 16 23 C -0.13 -2.21 9.36 -39.36 -0.37 -2.58 16 24 C -0.08 -1.40 6.11 -39.04 -0.24 -1.63 16 25 S -0.14 -2.12 22.56 -107.50 -2.43 -4.54 16 26 C -0.14 -1.69 9.15 101.05 0.92 -0.77 16 27 C -0.10 -1.75 9.79 -39.37 -0.39 -2.13 16 28 C -0.10 -1.60 9.66 -39.61 -0.38 -1.99 16 29 H 0.05 0.78 6.37 -51.93 -0.33 0.45 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.45 4.40 -51.93 -0.23 1.22 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.33 5.46 5.21 -39.29 -0.20 5.26 16 36 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.04 0.60 7.59 -51.93 -0.39 0.21 16 38 H 0.37 3.23 9.12 45.56 0.42 3.65 16 39 H 0.37 5.33 6.65 45.56 0.30 5.63 16 40 H 0.12 1.97 6.43 -52.48 -0.34 1.63 16 41 H 0.12 1.79 5.88 -52.49 -0.31 1.48 16 42 H 0.08 0.87 7.75 -51.92 -0.40 0.47 16 43 H 0.09 1.16 7.75 -51.93 -0.40 0.76 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.12 1.82 8.06 -52.48 -0.42 1.39 16 46 H 0.12 1.65 8.03 -52.49 -0.42 1.23 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -30.90 369.39 -9.35 -40.25 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -5.65 Total: 17.97 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -1.54 Total: -20.35 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.36 Total: -38.40 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -1.26 Total: -16.59 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.39 Total: 16.09 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -2.43 Total: -4.54 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.90 -9.35 -40.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.741 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds