Wall clock time and date at job start Tue Mar 31 2020 14:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47409 * 2 1 4 4 H 1.09001 * 109.47049 * 305.75002 * 3 2 1 5 5 C 1.50701 * 109.47169 * 185.74630 * 3 2 1 6 6 H 1.07996 * 120.00397 * 245.08381 * 5 3 2 7 7 C 1.37875 * 119.99690 * 65.08324 * 5 3 2 8 8 N 1.31512 * 120.00014 * 190.45283 * 7 5 3 9 9 Si 1.86804 * 120.00335 * 10.45802 * 7 5 3 10 10 H 1.48501 * 109.46980 * 86.57824 * 9 7 5 11 11 H 1.48493 * 109.47395 * 206.58314 * 9 7 5 12 12 H 1.48503 * 109.46537 * 326.58391 * 9 7 5 13 13 N 1.46900 * 109.46971 * 65.74721 * 3 2 1 14 14 C 1.46904 * 110.99932 * 207.45064 * 13 3 2 15 15 H 1.08997 * 109.47198 * 327.06610 * 14 13 3 16 16 C 1.53003 * 109.46435 * 87.06721 * 14 13 3 17 17 O 1.42899 * 109.47475 * 63.77496 * 16 14 13 18 18 C 1.53004 * 109.47305 * 207.06361 * 14 13 3 19 19 H 1.08999 * 109.46802 * 180.02562 * 18 14 13 20 20 O 1.42897 * 109.47121 * 300.00397 * 18 14 13 21 21 C 1.50701 * 109.46685 * 60.00234 * 18 14 13 22 22 C 1.38301 * 119.92327 * 279.72669 * 21 18 14 23 23 C 1.38081 * 120.08237 * 179.72942 * 22 21 18 24 24 C 1.38979 * 119.91469 * 0.54530 * 23 22 21 25 25 S 1.76199 * 120.07614 * 179.74805 * 24 23 22 26 26 C 1.81402 * 103.00390 * 359.97438 * 25 24 23 27 27 C 1.38967 * 119.84068 * 359.72506 * 24 23 22 28 28 C 1.38077 * 119.92373 * 0.02562 * 27 24 23 29 29 H 1.08995 * 109.46658 * 304.26534 * 1 2 3 30 30 H 1.08998 * 109.46556 * 64.26358 * 1 2 3 31 31 H 1.08993 * 109.47042 * 184.26477 * 1 2 3 32 32 H 1.08997 * 109.46939 * 239.99375 * 2 1 3 33 33 H 1.09001 * 109.46849 * 120.00305 * 2 1 3 34 34 H 0.97007 * 120.00226 * 180.02562 * 8 7 5 35 35 H 1.00896 * 111.00505 * 331.40703 * 13 3 2 36 36 H 1.09011 * 109.46677 * 183.77322 * 16 14 13 37 37 H 1.08991 * 109.47408 * 303.77227 * 16 14 13 38 38 H 0.96698 * 113.99960 * 179.97438 * 17 16 14 39 39 H 0.96704 * 113.99759 * 59.99691 * 20 18 14 40 40 H 1.08003 * 119.95702 * 0.02562 * 22 21 18 41 41 H 1.07998 * 120.04083 * 180.27356 * 23 22 21 42 42 H 1.09003 * 109.46449 * 299.99937 * 26 25 24 43 43 H 1.08997 * 109.47092 * 59.99119 * 26 25 24 44 44 H 1.08992 * 109.47413 * 179.97438 * 26 25 24 45 45 H 1.08007 * 120.03843 * 179.97438 * 27 24 23 46 46 H 1.08001 * 119.96291 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5952 1.9851 -0.8340 5 6 3.5404 1.4447 -0.1423 6 1 4.1587 1.8110 0.6638 7 6 4.1236 0.9792 -1.3016 8 7 5.4236 0.7872 -1.3526 9 14 3.0672 0.6211 -2.8001 10 1 2.8962 1.8645 -3.5937 11 1 3.7282 -0.4129 -3.6361 12 1 1.7372 0.1271 -2.3614 13 7 1.6670 2.0937 1.2628 14 6 1.5294 3.5455 1.0857 15 1 2.2395 3.8887 0.3333 16 6 0.1057 3.8709 0.6296 17 8 -0.8191 3.5009 1.6542 18 6 1.8132 4.2504 2.4138 19 1 1.7106 5.3276 2.2824 20 8 0.8823 3.8005 3.4002 21 6 3.2154 3.9298 2.8630 22 6 3.4807 2.7260 3.4902 23 6 4.7654 2.4265 3.8982 24 6 5.7904 3.3412 3.6880 25 16 7.4300 2.9661 4.2129 26 6 7.2559 1.3173 4.9489 27 6 5.5190 4.5521 3.0625 28 6 4.2329 4.8427 2.6526 29 1 -0.3632 0.5786 0.8493 30 1 -0.3632 0.4463 -0.9257 31 1 -0.3633 -1.0248 0.0764 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 5.8340 0.4600 -2.1684 35 1 0.8209 1.6937 1.6398 36 1 0.0224 4.9401 0.4337 37 1 -0.1198 3.3161 -0.2810 38 1 -1.7433 3.6796 1.4331 39 1 0.9174 2.8490 3.5690 40 1 2.6828 2.0174 3.6568 41 1 4.9726 1.4844 4.3839 42 1 6.5504 1.3626 5.7787 43 1 6.8871 0.6205 4.1963 44 1 8.2252 0.9781 5.3138 45 1 6.3131 5.2655 2.8979 46 1 4.0214 5.7834 2.1660 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:46 Heat of formation + Delta-G solvation = -88.637011 kcal Electronic energy + Delta-G solvation = -27133.590091 eV Core-core repulsion = 23534.667549 eV Total energy + Delta-G solvation = -3598.922541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.73952 -39.08612 -37.23728 -36.75869 -34.27778 -33.45181 -32.35017 -31.71886 -30.01256 -29.61436 -28.25907 -26.46303 -24.37022 -23.44147 -22.84918 -21.59587 -21.28333 -18.84208 -18.73960 -18.25643 -17.66057 -17.20071 -16.62032 -16.41290 -16.04615 -15.68310 -15.54085 -15.33559 -14.95013 -14.74665 -14.64321 -14.41575 -14.38868 -14.02414 -13.86826 -13.61380 -13.47221 -13.33099 -12.96452 -12.82275 -12.71987 -12.62005 -12.44433 -12.18044 -12.04943 -11.85286 -11.61241 -11.23984 -11.20132 -11.05522 -10.89972 -10.61736 -10.55197 -10.24235 -9.75534 -8.88567 -8.25048 -8.17735 -6.15320 0.36951 0.61113 0.66985 1.32598 1.36712 1.43496 1.52213 2.39089 2.83684 3.15206 3.27922 3.74972 3.78531 3.88464 3.97051 4.11024 4.16907 4.23638 4.26713 4.38807 4.39950 4.45936 4.52129 4.55163 4.57583 4.60177 4.74916 4.80709 4.83851 4.93407 4.98754 5.04673 5.15101 5.20319 5.22886 5.35965 5.42045 5.47546 5.55038 5.80993 5.85479 6.11575 6.18692 6.57815 6.93172 6.96696 7.02198 7.08856 7.48424 8.98897 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.005630 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.026633 B = 4972.555505 C = 6744.937485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.205 3.795 4 H -0.009 1.009 5 C -0.482 4.482 6 H 0.037 0.963 7 C 0.011 3.989 8 N -0.949 5.949 9 Si 0.911 3.089 10 H -0.284 1.284 11 H -0.299 1.299 12 H -0.214 1.214 13 N -0.662 5.662 14 C 0.065 3.935 15 H 0.071 0.929 16 C 0.061 3.939 17 O -0.557 6.557 18 C 0.178 3.822 19 H 0.108 0.892 20 O -0.541 6.541 21 C -0.106 4.106 22 C -0.055 4.055 23 C -0.146 4.146 24 C -0.098 4.098 25 S -0.160 6.160 26 C -0.131 4.131 27 C -0.121 4.121 28 C -0.108 4.108 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.258 0.742 35 H 0.340 0.660 36 H 0.057 0.943 37 H 0.036 0.964 38 H 0.387 0.613 39 H 0.375 0.625 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.217 4.551 9.345 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C 0.096 3.904 4 H 0.008 0.992 5 C -0.520 4.520 6 H 0.055 0.945 7 C -0.185 4.185 8 N -0.590 5.590 9 Si 0.737 3.263 10 H -0.210 1.210 11 H -0.226 1.226 12 H -0.137 1.137 13 N -0.295 5.295 14 C -0.046 4.046 15 H 0.090 0.910 16 C -0.019 4.019 17 O -0.364 6.364 18 C 0.117 3.883 19 H 0.126 0.874 20 O -0.346 6.346 21 C -0.108 4.108 22 C -0.075 4.075 23 C -0.169 4.169 24 C -0.210 4.210 25 S 0.081 5.919 26 C -0.299 4.299 27 C -0.144 4.144 28 C -0.127 4.127 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.161 0.839 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.235 0.765 39 H 0.224 0.776 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.956 5.532 9.763 13.202 hybrid contribution -1.625 -1.412 -2.097 3.005 sum -8.581 4.120 7.666 12.222 Atomic orbital electron populations 1.21802 0.95022 1.01971 1.01390 1.22130 0.95618 0.98489 1.01112 1.19236 0.93256 0.90795 0.87117 0.99160 1.21242 0.91543 1.38923 1.00329 0.94483 1.25696 0.95549 0.95728 1.01535 1.70115 1.12190 1.48559 1.28182 0.86544 0.82102 0.77706 0.79937 1.21027 1.22550 1.13720 1.60280 1.38931 1.01617 1.28678 1.22274 0.94190 0.90571 0.97597 0.91042 1.22608 0.90220 0.99066 0.89969 1.86551 1.19905 1.87218 1.42683 1.20595 0.83392 0.97842 0.86423 0.87396 1.86509 1.59610 1.29042 1.59453 1.20593 0.97098 0.94731 0.98409 1.20764 0.95943 0.95583 0.95230 1.21259 0.93396 0.98887 1.03371 1.21760 0.96638 0.98528 1.04102 1.85150 1.09234 1.23641 1.73871 1.23685 1.08298 0.94354 1.03544 1.20801 0.97506 0.95980 1.00132 1.21110 0.92148 1.00114 0.99377 0.91514 0.93745 0.91972 0.93395 0.92759 0.93348 0.83925 0.92438 0.94556 0.76497 0.77609 0.85123 0.85476 0.88462 0.90633 0.85335 0.85401 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.82 71.98 0.71 -3.47 16 2 C -0.14 -5.18 4.76 30.59 0.15 -5.04 16 3 C 0.21 8.60 1.38 44.17 0.06 8.66 16 4 H -0.01 -0.39 6.10 -2.39 -0.01 -0.40 16 5 C -0.48 -26.09 9.10 25.60 0.23 -25.86 16 6 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 7 C 0.01 0.63 5.39 84.65 0.46 1.09 16 8 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 9 Si 0.91 42.48 25.85 68.60 1.77 44.26 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 12 H -0.21 -8.76 5.10 99.48 0.51 -8.25 16 13 N -0.66 -22.86 4.07 -473.30 -1.93 -24.79 16 14 C 0.06 2.04 2.12 44.92 0.10 2.14 16 15 H 0.07 2.69 7.70 -2.39 -0.02 2.67 16 16 C 0.06 1.52 6.69 71.98 0.48 2.00 16 17 O -0.56 -12.16 10.79 -127.43 -1.37 -13.53 16 18 C 0.18 5.17 3.10 29.85 0.09 5.27 16 19 H 0.11 2.84 8.00 -2.39 -0.02 2.82 16 20 O -0.54 -15.23 11.05 -127.43 -1.41 -16.64 16 21 C -0.11 -3.52 4.89 -19.83 -0.10 -3.62 16 22 C -0.06 -1.91 8.36 22.25 0.19 -1.72 16 23 C -0.15 -5.13 9.36 22.41 0.21 -4.92 16 24 C -0.10 -3.52 6.11 22.62 0.14 -3.38 16 25 S -0.16 -5.01 22.56 -56.49 -1.27 -6.29 16 26 C -0.13 -3.11 9.15 113.37 1.04 -2.07 16 27 C -0.12 -4.23 9.79 22.41 0.22 -4.01 16 28 C -0.11 -3.58 9.66 22.25 0.21 -3.36 16 29 H 0.07 1.73 6.37 -2.39 -0.02 1.72 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 2.00 4.40 -2.39 -0.01 1.99 16 33 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 35 H 0.34 10.45 5.21 -89.70 -0.47 9.98 16 36 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.04 0.95 7.59 -2.39 -0.02 0.93 16 38 H 0.39 5.14 9.12 -74.06 -0.68 4.47 16 39 H 0.38 9.95 6.65 -74.05 -0.49 9.46 16 40 H 0.13 4.14 6.43 -2.91 -0.02 4.13 16 41 H 0.13 4.00 5.88 -2.91 -0.02 3.99 16 42 H 0.10 2.00 7.75 -2.39 -0.02 1.98 16 43 H 0.07 2.01 7.75 -2.39 -0.02 1.99 16 44 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 46 H 0.14 3.85 8.03 -2.91 -0.02 3.83 16 Total: -1.00 -69.12 369.39 -0.55 -69.67 By element: Atomic # 1 Polarization: 45.51 SS G_CDS: -0.82 Total: 44.69 kcal Atomic # 6 Polarization: -42.47 SS G_CDS: 4.18 Total: -38.29 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -1.63 Total: -83.87 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -2.78 Total: -30.17 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.77 Total: 44.26 kcal Atomic # 16 Polarization: -5.01 SS G_CDS: -1.27 Total: -6.29 kcal Total: -69.12 -0.55 -69.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.963 kcal (2) G-P(sol) polarization free energy of solvation -69.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds