Wall clock time and date at job start Tue Mar 31 2020 14:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47251 * 2 1 4 4 N 1.46893 * 109.47220 * 172.90984 * 3 2 1 5 5 C 1.46903 * 111.00058 * 192.71546 * 4 3 2 6 6 C 1.50697 * 109.47374 * 66.04310 * 5 4 3 7 7 H 1.08003 * 119.99631 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00528 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00394 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99671 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47325 * 89.99564 * 10 8 6 12 12 H 1.48498 * 109.47130 * 210.00128 * 10 8 6 13 13 H 1.48504 * 109.46952 * 329.99674 * 10 8 6 14 14 C 1.46898 * 111.00101 * 68.76046 * 4 3 2 15 15 H 1.09001 * 109.47166 * 153.03364 * 14 4 3 16 16 C 1.53000 * 109.47175 * 33.03437 * 14 4 3 17 17 C 1.53001 * 109.47089 * 273.03310 * 14 4 3 18 18 S 1.81405 * 109.47099 * 293.59644 * 17 14 4 19 19 O 1.42097 * 110.54591 * 296.70749 * 18 17 14 20 20 O 1.42102 * 110.53981 * 73.45832 * 18 17 14 21 21 C 1.76200 * 104.44946 * 185.08192 * 18 17 14 22 22 C 1.38235 * 120.00066 * 269.72929 * 21 18 17 23 23 C 1.38239 * 119.99769 * 179.76242 * 22 21 18 24 24 C 1.38237 * 119.99923 * 0.51290 * 23 22 21 25 25 C 1.38229 * 120.00075 * 359.73874 * 24 23 22 26 26 C 1.38234 * 119.99728 * 90.00023 * 21 18 17 27 27 H 1.09001 * 109.47436 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47542 * 299.99938 * 1 2 3 29 29 H 1.08997 * 109.47364 * 60.00280 * 1 2 3 30 30 H 1.09003 * 109.46964 * 240.00042 * 2 1 3 31 31 H 1.08997 * 109.47397 * 120.00276 * 2 1 3 32 32 H 1.08998 * 109.47215 * 52.90592 * 3 2 1 33 33 H 1.09004 * 109.46742 * 292.91121 * 3 2 1 34 34 H 1.08997 * 109.47034 * 306.04124 * 5 4 3 35 35 H 1.09008 * 109.47255 * 186.04581 * 5 4 3 36 36 H 0.96995 * 120.00120 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.46880 * 60.00002 * 16 14 4 38 38 H 1.09004 * 109.47057 * 180.02562 * 16 14 4 39 39 H 1.09001 * 109.47014 * 300.00020 * 16 14 4 40 40 H 1.08998 * 109.47036 * 53.59881 * 17 14 4 41 41 H 1.09002 * 109.46813 * 173.60214 * 17 14 4 42 42 H 1.08001 * 120.00039 * 0.02562 * 22 21 18 43 43 H 1.08001 * 119.99910 * 180.22614 * 23 22 21 44 44 H 1.07996 * 119.99609 * 179.72366 * 24 23 22 45 45 H 1.08000 * 120.00438 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.00186 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4989 1.4460 0.1709 5 6 3.9899 2.7963 0.4767 6 6 3.4700 3.2268 1.8241 7 1 2.8384 2.5634 2.3962 8 6 3.8006 4.4675 2.3264 9 7 3.3473 4.8429 3.5025 10 14 4.8925 5.6152 1.3365 11 1 4.0491 6.4690 0.4620 12 1 5.6749 6.4742 2.2613 13 1 5.8218 4.8146 0.4992 14 6 4.1694 0.8983 -1.0158 15 1 5.1699 1.3233 -1.0965 16 6 3.3624 1.2525 -2.2665 17 6 4.2703 -0.6231 -0.8879 18 16 5.3820 -1.0422 0.4830 19 8 6.6983 -0.5772 0.2176 20 8 4.7525 -0.7869 1.7311 21 6 5.5195 -2.7975 0.4166 22 6 4.6355 -3.5875 1.1274 23 6 4.7403 -4.9647 1.0714 24 6 5.7359 -5.5518 0.3130 25 6 6.6231 -4.7618 -0.3937 26 6 6.5150 -3.3846 -0.3419 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5768 1.9916 0.8197 33 1 1.7839 1.9183 -0.9466 34 1 3.6404 3.4915 -0.2866 35 1 5.0799 2.7918 0.4923 36 1 3.5796 5.7159 3.8557 37 1 3.2905 2.3363 -2.3576 38 1 3.8597 0.8457 -3.1471 39 1 2.3619 0.8275 -2.1858 40 1 3.2813 -1.0377 -0.6935 41 1 4.6635 -1.0403 -1.8150 42 1 3.8602 -3.1287 1.7232 43 1 4.0474 -5.5820 1.6239 44 1 5.8206 -6.6277 0.2728 45 1 7.4012 -5.2204 -0.9859 46 1 7.2086 -2.7673 -0.8934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255821167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:37 Heat of formation + Delta-G solvation = -27.645263 kcal Electronic energy + Delta-G solvation = -26772.984984 eV Core-core repulsion = 23176.707243 eV Total energy + Delta-G solvation = -3596.277741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.22520 -38.63089 -36.66458 -35.43326 -33.16613 -32.95360 -31.49355 -31.19700 -31.18825 -27.84752 -27.09880 -25.31830 -23.33882 -22.89001 -21.54666 -21.20121 -19.44412 -18.78571 -17.79774 -16.91883 -16.40199 -16.03275 -15.80495 -15.50691 -14.79206 -14.63381 -14.52720 -14.15355 -13.82843 -13.69408 -13.47699 -13.19116 -13.00795 -12.76729 -12.63068 -12.27630 -12.25179 -12.15175 -11.73651 -11.62087 -11.59797 -11.52658 -11.36867 -11.11815 -10.84490 -10.70467 -10.67288 -10.40725 -10.27594 -10.06593 -9.89919 -9.75636 -9.51644 -9.23195 -9.22278 -8.51640 -7.50438 -5.98297 -3.95223 0.31898 0.74157 1.10302 3.20730 3.31899 3.38157 3.40611 3.42906 4.19991 4.28287 4.46806 4.48277 4.67721 4.71766 4.77803 4.80941 5.02110 5.13576 5.25178 5.32301 5.33354 5.39680 5.47086 5.49416 5.54530 5.59603 5.69762 5.74236 5.89627 5.96778 5.98008 6.02253 6.03880 6.13733 6.15592 6.18098 6.27515 6.40914 6.62556 6.64538 6.68769 6.90205 6.99935 7.58862 7.84589 7.97343 8.68869 9.13268 9.62704 11.14781 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.004200 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.640512 B = 6664.676414 C = 7281.002137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.054 3.946 4 N -0.527 5.527 5 C 0.159 3.841 6 C -0.506 4.506 7 H 0.086 0.914 8 C 0.070 3.930 9 N -0.898 5.898 10 Si 0.869 3.131 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.081 3.919 15 H 0.087 0.913 16 C -0.172 4.172 17 C -0.606 4.606 18 S 2.500 3.500 19 O -0.946 6.946 20 O -0.898 6.898 21 C -0.663 4.663 22 C -0.023 4.023 23 C -0.143 4.143 24 C -0.074 4.074 25 C -0.145 4.145 26 C -0.029 4.029 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.035 0.965 34 H -0.011 1.011 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.149 0.851 41 H 0.126 0.874 42 H 0.144 0.856 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 -19.548 -12.586 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C -0.073 4.073 4 N -0.250 5.250 5 C 0.033 3.967 6 C -0.544 4.544 7 H 0.104 0.896 8 C -0.132 4.132 9 N -0.537 5.537 10 Si 0.696 3.304 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.190 1.190 14 C -0.030 4.030 15 H 0.105 0.895 16 C -0.232 4.232 17 C -0.736 4.736 18 S 2.677 3.323 19 O -0.943 6.943 20 O -0.895 6.895 21 C -0.747 4.747 22 C -0.041 4.041 23 C -0.162 4.162 24 C -0.092 4.092 25 C -0.163 4.163 26 C -0.048 4.048 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.053 0.947 34 H 0.007 0.993 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.166 0.834 41 H 0.144 0.856 42 H 0.162 0.838 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.148 0.852 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.995 -19.188 -11.433 22.358 hybrid contribution 0.186 0.437 -1.655 1.722 sum 1.180 -18.751 -13.088 22.897 Atomic orbital electron populations 1.21732 0.96131 1.00926 1.01941 1.21969 0.95267 0.98372 1.01893 1.22211 0.87999 0.95685 1.01423 1.62220 1.05270 1.26551 1.30969 1.20295 0.95855 0.83428 0.97140 1.21008 1.31361 1.01085 1.00942 0.89586 1.24869 0.95751 0.97729 0.94845 1.69885 1.45533 1.20740 1.17569 0.86959 0.81538 0.81416 0.80470 1.20390 1.21058 1.19050 1.21392 1.00141 0.89651 0.91796 0.89469 1.22396 1.01352 1.02196 0.97215 1.30719 1.17972 1.06276 1.18605 1.05634 0.76011 0.73176 0.77441 1.93527 1.35324 1.79081 1.86372 1.93623 1.77064 1.82006 1.36830 1.31187 1.05858 1.27761 1.09904 1.21076 0.95769 0.93909 0.93391 1.21333 0.99442 0.95017 1.00378 1.21456 0.93555 1.00107 0.94070 1.21294 1.00179 0.93835 1.01030 1.21016 0.94289 0.95578 0.93880 0.93256 0.92212 0.93264 0.92293 0.90472 0.88682 0.94683 0.99283 0.95214 0.92710 0.91849 0.92603 0.91037 0.83369 0.85564 0.83785 0.85100 0.85478 0.85243 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.14 -1.97 4.34 -26.73 -0.12 -2.08 16 3 C 0.05 0.98 4.30 -3.83 -0.02 0.96 16 4 N -0.53 -10.60 3.87 -228.09 -0.88 -11.49 16 5 C 0.16 3.84 3.70 -4.98 -0.02 3.82 16 6 C -0.51 -14.49 8.88 -34.44 -0.31 -14.80 16 7 H 0.09 2.69 7.46 -52.48 -0.39 2.29 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 10 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 14 C 0.08 1.30 2.24 -67.71 -0.15 1.15 16 15 H 0.09 1.45 7.55 -51.93 -0.39 1.06 16 16 C -0.17 -2.28 7.86 37.16 0.29 -1.98 16 17 C -0.61 -7.82 5.28 37.16 0.20 -7.62 16 18 S 2.50 40.42 4.97 -107.50 -0.53 39.89 16 19 O -0.95 -17.75 17.13 -57.54 -0.99 -18.74 16 20 O -0.90 -18.12 16.83 -57.54 -0.97 -19.09 16 21 C -0.66 -8.70 5.66 -39.58 -0.22 -8.93 16 22 C -0.02 -0.27 9.47 -39.58 -0.37 -0.65 16 23 C -0.14 -1.37 10.05 -39.58 -0.40 -1.77 16 24 C -0.07 -0.64 10.05 -39.58 -0.40 -1.04 16 25 C -0.14 -1.35 10.05 -39.58 -0.40 -1.75 16 26 C -0.03 -0.33 9.47 -39.58 -0.37 -0.71 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.71 4.43 -51.93 -0.23 0.48 16 31 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 32 H 0.09 1.99 6.61 -51.93 -0.34 1.65 16 33 H 0.04 0.58 5.69 -51.93 -0.30 0.28 16 34 H -0.01 -0.25 7.54 -51.93 -0.39 -0.64 16 35 H 0.03 0.75 6.85 -51.92 -0.36 0.39 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.06 0.90 7.98 -51.93 -0.41 0.48 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.88 5.01 -51.93 -0.26 0.62 16 40 H 0.15 1.70 4.28 -51.92 -0.22 1.48 16 41 H 0.13 1.14 8.14 -51.92 -0.42 0.72 16 42 H 0.14 1.63 7.57 -52.49 -0.40 1.23 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 46 H 0.14 1.44 7.57 -52.49 -0.40 1.04 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -35.97 371.52 -10.74 -46.72 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.06 Total: 2.02 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: -2.02 Total: -34.92 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.11 Total: -38.58 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -1.95 Total: -37.83 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 16 Polarization: 40.42 SS G_CDS: -0.53 Total: 39.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.97 -10.74 -46.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255821167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.072 kcal (2) G-P(sol) polarization free energy of solvation -35.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds