Wall clock time and date at job start Tue Mar 31 2020 14:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47251 * 2 1 4 4 N 1.46893 * 109.47220 * 172.90984 * 3 2 1 5 5 C 1.46903 * 111.00058 * 192.71546 * 4 3 2 6 6 C 1.50697 * 109.47374 * 66.04310 * 5 4 3 7 7 H 1.08003 * 119.99631 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00528 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00394 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99671 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47325 * 89.99564 * 10 8 6 12 12 H 1.48498 * 109.47130 * 210.00128 * 10 8 6 13 13 H 1.48504 * 109.46952 * 329.99674 * 10 8 6 14 14 C 1.46898 * 111.00101 * 68.76046 * 4 3 2 15 15 H 1.09001 * 109.47166 * 153.03364 * 14 4 3 16 16 C 1.53000 * 109.47175 * 33.03437 * 14 4 3 17 17 C 1.53001 * 109.47089 * 273.03310 * 14 4 3 18 18 S 1.81405 * 109.47099 * 293.59644 * 17 14 4 19 19 O 1.42097 * 110.54591 * 296.70749 * 18 17 14 20 20 O 1.42102 * 110.53981 * 73.45832 * 18 17 14 21 21 C 1.76200 * 104.44946 * 185.08192 * 18 17 14 22 22 C 1.38235 * 120.00066 * 269.72929 * 21 18 17 23 23 C 1.38239 * 119.99769 * 179.76242 * 22 21 18 24 24 C 1.38237 * 119.99923 * 0.51290 * 23 22 21 25 25 C 1.38229 * 120.00075 * 359.73874 * 24 23 22 26 26 C 1.38234 * 119.99728 * 90.00023 * 21 18 17 27 27 H 1.09001 * 109.47436 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47542 * 299.99938 * 1 2 3 29 29 H 1.08997 * 109.47364 * 60.00280 * 1 2 3 30 30 H 1.09003 * 109.46964 * 240.00042 * 2 1 3 31 31 H 1.08997 * 109.47397 * 120.00276 * 2 1 3 32 32 H 1.08998 * 109.47215 * 52.90592 * 3 2 1 33 33 H 1.09004 * 109.46742 * 292.91121 * 3 2 1 34 34 H 1.08997 * 109.47034 * 306.04124 * 5 4 3 35 35 H 1.09008 * 109.47255 * 186.04581 * 5 4 3 36 36 H 0.96995 * 120.00120 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.46880 * 60.00002 * 16 14 4 38 38 H 1.09004 * 109.47057 * 180.02562 * 16 14 4 39 39 H 1.09001 * 109.47014 * 300.00020 * 16 14 4 40 40 H 1.08998 * 109.47036 * 53.59881 * 17 14 4 41 41 H 1.09002 * 109.46813 * 173.60214 * 17 14 4 42 42 H 1.08001 * 120.00039 * 0.02562 * 22 21 18 43 43 H 1.08001 * 119.99910 * 180.22614 * 23 22 21 44 44 H 1.07996 * 119.99609 * 179.72366 * 24 23 22 45 45 H 1.08000 * 120.00438 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.00186 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4989 1.4460 0.1709 5 6 3.9899 2.7963 0.4767 6 6 3.4700 3.2268 1.8241 7 1 2.8384 2.5634 2.3962 8 6 3.8006 4.4675 2.3264 9 7 3.3473 4.8429 3.5025 10 14 4.8925 5.6152 1.3365 11 1 4.0491 6.4690 0.4620 12 1 5.6749 6.4742 2.2613 13 1 5.8218 4.8146 0.4992 14 6 4.1694 0.8983 -1.0158 15 1 5.1699 1.3233 -1.0965 16 6 3.3624 1.2525 -2.2665 17 6 4.2703 -0.6231 -0.8879 18 16 5.3820 -1.0422 0.4830 19 8 6.6983 -0.5772 0.2176 20 8 4.7525 -0.7869 1.7311 21 6 5.5195 -2.7975 0.4166 22 6 4.6355 -3.5875 1.1274 23 6 4.7403 -4.9647 1.0714 24 6 5.7359 -5.5518 0.3130 25 6 6.6231 -4.7618 -0.3937 26 6 6.5150 -3.3846 -0.3419 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.5768 1.9916 0.8197 33 1 1.7839 1.9183 -0.9466 34 1 3.6404 3.4915 -0.2866 35 1 5.0799 2.7918 0.4923 36 1 3.5796 5.7159 3.8557 37 1 3.2905 2.3363 -2.3576 38 1 3.8597 0.8457 -3.1471 39 1 2.3619 0.8275 -2.1858 40 1 3.2813 -1.0377 -0.6935 41 1 4.6635 -1.0403 -1.8150 42 1 3.8602 -3.1287 1.7232 43 1 4.0474 -5.5820 1.6239 44 1 5.8206 -6.6277 0.2728 45 1 7.4012 -5.2204 -0.9859 46 1 7.2086 -2.7673 -0.8934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255821167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:36 Heat of formation + Delta-G solvation = -53.970853 kcal Electronic energy + Delta-G solvation = -26774.126547 eV Core-core repulsion = 23176.707243 eV Total energy + Delta-G solvation = -3597.419304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.05788 -39.99271 -38.00803 -36.78920 -35.10916 -34.24395 -33.00299 -32.23369 -31.96247 -29.30547 -28.53639 -26.77395 -24.24210 -23.66160 -23.34911 -22.46212 -20.81450 -19.93066 -18.99784 -18.83566 -17.64017 -17.24124 -16.86203 -16.69286 -16.50662 -15.66540 -15.63762 -15.47361 -15.37765 -14.78011 -14.60649 -14.44792 -14.13619 -14.01101 -13.91416 -13.75970 -13.67214 -13.15172 -13.09903 -12.96863 -12.88985 -12.84394 -12.65238 -12.42325 -12.28301 -12.17494 -11.88422 -11.79284 -11.61946 -11.53858 -11.45086 -11.39200 -11.06106 -10.77506 -10.32692 -10.01185 -9.04828 -8.26858 -6.29314 -0.82188 -0.13265 0.32946 1.30442 1.35045 1.44836 2.11919 2.33870 2.53476 2.96759 3.05109 3.08098 3.31602 3.61819 3.82076 3.95651 4.00802 4.10603 4.13845 4.16223 4.32556 4.35725 4.43230 4.51838 4.55393 4.58094 4.69737 4.72707 4.73465 4.83933 4.85925 5.00285 5.02683 5.04106 5.11914 5.16075 5.20912 5.30651 5.31106 5.40558 5.46291 5.53449 5.54878 5.91064 5.98966 6.36144 6.61575 6.77664 7.32747 8.90180 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.004200 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.640512 B = 6664.676414 C = 7281.002137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.055 3.945 4 N -0.548 5.548 5 C 0.167 3.833 6 C -0.512 4.512 7 H 0.038 0.962 8 C 0.007 3.993 9 N -0.948 5.948 10 Si 0.940 3.060 11 H -0.259 1.259 12 H -0.281 1.281 13 H -0.252 1.252 14 C 0.068 3.932 15 H 0.077 0.923 16 C -0.168 4.168 17 C -0.582 4.582 18 S 2.481 3.519 19 O -0.987 6.987 20 O -0.961 6.961 21 C -0.668 4.668 22 C -0.046 4.046 23 C -0.143 4.143 24 C -0.065 4.065 25 C -0.141 4.141 26 C -0.046 4.046 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.001 0.999 35 H 0.019 0.981 36 H 0.266 0.734 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.166 0.834 41 H 0.178 0.822 42 H 0.136 0.864 43 H 0.158 0.842 44 H 0.166 0.834 45 H 0.162 0.838 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.810 -22.366 -16.606 27.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C -0.073 4.073 4 N -0.272 5.272 5 C 0.040 3.960 6 C -0.550 4.550 7 H 0.057 0.943 8 C -0.190 4.190 9 N -0.589 5.589 10 Si 0.763 3.237 11 H -0.183 1.183 12 H -0.207 1.207 13 H -0.176 1.176 14 C -0.042 4.042 15 H 0.096 0.904 16 C -0.227 4.227 17 C -0.715 4.715 18 S 2.667 3.333 19 O -0.985 6.985 20 O -0.958 6.958 21 C -0.756 4.756 22 C -0.065 4.065 23 C -0.162 4.162 24 C -0.083 4.083 25 C -0.160 4.160 26 C -0.065 4.065 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.019 0.981 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.183 0.817 41 H 0.195 0.805 42 H 0.154 0.846 43 H 0.175 0.825 44 H 0.184 0.816 45 H 0.180 0.820 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.360 -21.986 -15.445 26.903 hybrid contribution 0.034 1.114 -0.385 1.179 sum 1.395 -20.872 -15.829 26.233 Atomic orbital electron populations 1.21720 0.94409 1.02545 1.01754 1.21936 0.96735 0.95735 1.02541 1.22221 0.86678 0.97941 1.00437 1.62083 1.06649 1.24092 1.34343 1.20004 0.94933 0.86220 0.94804 1.21246 1.30491 1.00540 1.02725 0.94341 1.25835 0.97445 0.99727 0.96034 1.70052 1.47498 1.21581 1.19734 0.85825 0.79710 0.79054 0.79120 1.18347 1.20697 1.17630 1.21592 0.99831 0.91166 0.91615 0.90435 1.22372 1.01825 1.01865 0.96630 1.30550 1.17781 1.04316 1.18811 1.05509 0.75600 0.74539 0.77628 1.93463 1.37415 1.80714 1.86882 1.93558 1.77756 1.83846 1.40657 1.30507 1.07899 1.24888 1.12329 1.21204 0.96014 0.95323 0.93934 1.21692 1.00177 0.93988 1.00320 1.21958 0.92063 1.02080 0.92213 1.21714 1.00759 0.92766 1.00765 1.21252 0.94042 0.97082 0.94147 0.90695 0.94249 0.91679 0.88927 0.92451 0.93298 0.92664 0.98125 0.96271 0.92500 0.92942 0.88962 0.89716 0.81656 0.80471 0.84590 0.82486 0.81633 0.82025 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.91 71.98 0.71 -2.72 16 2 C -0.13 -3.69 4.34 30.59 0.13 -3.56 16 3 C 0.05 2.00 4.30 86.30 0.37 2.37 16 4 N -0.55 -22.68 3.87 -875.53 -3.39 -26.07 16 5 C 0.17 8.38 3.70 85.56 0.32 8.70 16 6 C -0.51 -31.24 8.88 25.60 0.23 -31.01 16 7 H 0.04 2.64 7.46 -2.91 -0.02 2.61 16 8 C 0.01 0.40 5.47 84.65 0.46 0.86 16 9 N -0.95 -61.90 13.96 21.45 0.30 -61.60 16 10 Si 0.94 45.98 27.47 68.60 1.88 47.86 16 11 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 H -0.25 -11.70 6.54 99.48 0.65 -11.05 16 14 C 0.07 2.10 2.24 44.92 0.10 2.20 16 15 H 0.08 2.54 7.55 -2.39 -0.02 2.52 16 16 C -0.17 -3.84 7.86 71.98 0.57 -3.27 16 17 C -0.58 -13.92 5.28 71.98 0.38 -13.54 16 18 S 2.48 82.94 4.97 -56.49 -0.28 82.66 16 19 O -0.99 -38.63 17.13 -127.65 -2.19 -40.82 16 20 O -0.96 -42.04 16.83 -127.65 -2.15 -44.19 16 21 C -0.67 -17.24 5.66 22.27 0.13 -17.12 16 22 C -0.05 -1.07 9.47 22.27 0.21 -0.86 16 23 C -0.14 -2.36 10.05 22.27 0.22 -2.13 16 24 C -0.07 -0.85 10.05 22.27 0.22 -0.63 16 25 C -0.14 -2.11 10.05 22.27 0.22 -1.89 16 26 C -0.05 -0.98 9.47 22.27 0.21 -0.77 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.93 4.43 -2.39 -0.01 1.92 16 31 H 0.06 1.84 8.11 -2.39 -0.02 1.82 16 32 H 0.05 2.22 6.61 -2.39 -0.02 2.20 16 33 H 0.06 1.77 5.69 -2.38 -0.01 1.76 16 34 H 0.00 0.05 7.54 -2.39 -0.02 0.03 16 35 H 0.02 0.99 6.85 -2.38 -0.02 0.98 16 36 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 37 H 0.05 1.34 7.98 -2.39 -0.02 1.32 16 38 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.08 1.71 5.01 -2.39 -0.01 1.70 16 40 H 0.17 3.39 4.28 -2.39 -0.01 3.38 16 41 H 0.18 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.14 3.25 7.57 -2.91 -0.02 3.23 16 43 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 44 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 45 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 46 H 0.14 2.79 7.57 -2.91 -0.02 2.77 16 Total: -1.00 -87.00 371.52 -0.43 -87.43 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.91 Total: 18.09 kcal Atomic # 6 Polarization: -67.85 SS G_CDS: 4.49 Total: -63.36 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -3.09 Total: -87.67 kcal Atomic # 8 Polarization: -80.68 SS G_CDS: -4.34 Total: -85.01 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Atomic # 16 Polarization: 82.94 SS G_CDS: -0.28 Total: 82.66 kcal Total: -87.00 -0.43 -87.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255821167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.455 kcal (2) G-P(sol) polarization free energy of solvation -86.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds