Wall clock time and date at job start Tue Mar 31 2020 16:34:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09001 * 109.47190 * 2 1
4 4 C 1.50700 * 109.47369 * 119.99835 * 2 1 3
5 5 O 1.21278 * 120.00197 * 120.00231 * 4 2 1
6 6 N 1.34783 * 119.99861 * 300.27610 * 4 2 1
7 7 C 1.39925 * 119.99569 * 175.08775 * 6 4 2
8 8 C 1.38877 * 120.06566 * 214.80845 * 7 6 4
9 9 C 1.38117 * 119.92300 * 179.70289 * 8 7 6
10 10 C 1.38273 * 120.07183 * 0.57669 * 9 8 7
11 11 C 1.50702 * 119.92887 * 179.69848 * 10 9 8
12 12 C 1.50697 * 109.47142 * 270.02296 * 11 10 9
13 13 H 1.07997 * 120.00131 * 0.02562 * 12 11 10
14 14 C 1.37879 * 119.99714 * 179.97438 * 12 11 10
15 15 N 1.31519 * 120.00292 * 0.02562 * 14 12 11
16 16 Si 1.86797 * 119.99811 * 180.02562 * 14 12 11
17 17 H 1.48503 * 109.47409 * 359.97438 * 16 14 12
18 18 H 1.48502 * 109.47455 * 119.99866 * 16 14 12
19 19 H 1.48505 * 109.47159 * 240.00076 * 16 14 12
20 20 C 1.38283 * 120.14396 * 359.72435 * 10 9 8
21 21 C 1.38116 * 120.06620 * 359.97438 * 20 10 9
22 22 C 1.50703 * 109.47400 * 239.99852 * 2 1 3
23 23 C 1.38280 * 119.97116 * 299.73005 * 22 2 1
24 24 C 1.38254 * 120.11083 * 179.72591 * 23 22 2
25 25 C 1.38160 * 120.05188 * 0.54086 * 24 23 22
26 26 C 1.38708 * 119.94791 * 359.73125 * 25 24 23
27 27 O 1.35901 * 120.05997 * 179.97438 * 26 25 24
28 28 C 1.38123 * 119.97064 * 119.99693 * 22 2 1
29 29 H 1.08995 * 109.47432 * 299.99830 * 1 2 3
30 30 H 1.08995 * 109.47395 * 60.00458 * 1 2 3
31 31 H 1.09001 * 109.47190 * 180.02562 * 1 2 3
32 32 H 0.96993 * 119.99699 * 355.09336 * 6 4 2
33 33 H 1.07999 * 120.03517 * 359.97438 * 8 7 6
34 34 H 1.08005 * 119.95855 * 180.30071 * 9 8 7
35 35 H 1.09004 * 109.47187 * 30.02895 * 11 10 9
36 36 H 1.09006 * 109.47059 * 150.02171 * 11 10 9
37 37 H 0.97002 * 120.00181 * 180.02562 * 15 14 12
38 38 H 1.08003 * 119.96617 * 179.97438 * 20 10 9
39 39 H 1.08007 * 120.02861 * 179.97438 * 21 20 10
40 40 H 1.08000 * 119.94356 * 359.96975 * 23 22 2
41 41 H 1.07994 * 119.97164 * 180.25038 * 24 23 22
42 42 H 1.07999 * 120.02891 * 179.70366 * 25 24 23
43 43 H 0.96705 * 113.99658 * 270.02218 * 27 26 25
44 44 H 1.08004 * 120.02809 * 0.02585 * 28 22 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 8 2.7296 -1.6964 1.1192
6 7 1.7022 -0.2531 2.4546
7 6 2.0818 -0.9697 3.5949
8 6 1.2494 -1.0010 4.7061
9 6 1.6243 -1.7143 5.8279
10 6 2.8323 -2.3868 5.8496
11 6 3.2412 -3.1585 7.0778
12 6 4.0136 -2.2554 8.0045
13 1 4.1903 -1.2255 7.7316
14 6 4.4937 -2.7437 9.2012
15 7 4.2780 -3.9977 9.5338
16 14 5.4505 -1.6240 10.3502
17 1 5.5557 -0.2705 9.7485
18 1 4.7452 -1.5332 11.6539
19 1 6.8119 -2.1784 10.5615
20 6 3.6662 -2.3524 4.7471
21 6 3.2943 -1.6461 3.6200
22 6 2.0324 -0.7104 -1.2304
23 6 1.7026 -2.0360 -1.4458
24 6 2.1572 -2.6889 -2.5765
25 6 2.9517 -2.0213 -3.4886
26 6 3.2886 -0.6933 -3.2720
27 8 4.0704 -0.0345 -4.1674
28 6 2.8264 -0.0386 -2.1393
29 1 -0.3634 0.5138 0.8899
30 1 -0.3634 0.5137 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.2013 0.5726 2.5450
33 1 0.3081 -0.4719 4.6915
34 1 0.9751 -1.7431 6.6906
35 1 2.3514 -3.5275 7.5881
36 1 3.8680 -4.0011 6.7856
37 1 4.6155 -4.3411 10.3758
38 1 4.6093 -2.8784 4.7674
39 1 3.9463 -1.6192 2.7593
40 1 1.0856 -2.5609 -0.7316
41 1 1.8950 -3.7229 -2.7445
42 1 3.3106 -2.5331 -4.3693
43 1 5.0178 -0.0992 -3.9846
44 1 3.0875 0.9953 -1.9681
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001303798014.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:34:56
Heat of formation + Delta-G solvation = -38.381503 kcal
Electronic energy + Delta-G solvation = -25830.226629 eV
Core-core repulsion = 22098.039379 eV
Total energy + Delta-G solvation = -3732.187250 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.84814 -39.74752 -38.30380 -37.02141 -34.91464 -34.26851 -32.96940 -30.76860
-30.34985 -30.24948 -29.23824 -26.74656 -25.08792 -23.44329 -22.87735 -22.39602
-22.04170 -20.50597 -19.92638 -18.44206 -17.33676 -17.09143 -16.62250 -16.30946
-15.97263 -15.45073 -15.22261 -14.98297 -14.62414 -14.41465 -14.21743 -13.86893
-13.69111 -13.16244 -13.00939 -12.85363 -12.58166 -12.54360 -12.43763 -12.19169
-11.98943 -11.83906 -11.56382 -11.37460 -11.29107 -10.84598 -10.74163 -10.59614
-10.38347 -10.01271 -9.80460 -9.41754 -9.26497 -9.10226 -8.79912 -8.43063
-8.29668 -7.41144 -6.04110 -4.08104 0.99804 1.06894 1.84447 2.05359
2.63397 3.01015 3.28862 3.36526 3.41394 3.46459 3.89622 4.20851
4.35689 4.45021 4.56398 4.67207 4.73402 4.85568 4.89139 5.06172
5.21120 5.29897 5.31652 5.38071 5.42386 5.57741 5.59710 5.68935
5.71781 5.93481 6.04613 6.10862 6.13023 6.17840 6.19138 6.30990
6.53912 6.64103 6.77377 6.89774 7.15628 7.20200 7.35643 7.47447
7.51576 7.70083 7.86200 7.91781 8.14311 8.32240 8.97508 9.55661
11.05518
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.022699 B = 0.002192 C = 0.002135
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1233.251695 B =12770.367401 C =13108.851523
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.070 4.070
3 H 0.106 0.894
4 C 0.513 3.487
5 O -0.511 6.511
6 N -0.666 5.666
7 C 0.101 3.899
8 C -0.142 4.142
9 C -0.109 4.109
10 C -0.041 4.041
11 C 0.047 3.953
12 C -0.510 4.510
13 H 0.057 0.943
14 C 0.057 3.943
15 N -0.894 5.894
16 Si 0.895 3.105
17 H -0.272 1.272
18 H -0.283 1.283
19 H -0.283 1.283
20 C -0.110 4.110
21 C -0.117 4.117
22 C -0.052 4.052
23 C -0.090 4.090
24 C -0.104 4.104
25 C -0.144 4.144
26 C 0.099 3.901
27 O -0.501 6.501
28 C -0.136 4.136
29 H 0.066 0.934
30 H 0.071 0.929
31 H 0.065 0.935
32 H 0.405 0.595
33 H 0.114 0.886
34 H 0.122 0.878
35 H 0.029 0.971
36 H 0.029 0.971
37 H 0.261 0.739
38 H 0.121 0.879
39 H 0.128 0.872
40 H 0.123 0.877
41 H 0.127 0.873
42 H 0.126 0.874
43 H 0.390 0.610
44 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.335 8.973 -24.473 27.078
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.092 4.092
3 H 0.124 0.876
4 C 0.299 3.701
5 O -0.385 6.385
6 N -0.311 5.311
7 C 0.009 3.991
8 C -0.162 4.162
9 C -0.128 4.128
10 C -0.042 4.042
11 C 0.010 3.990
12 C -0.548 4.548
13 H 0.076 0.924
14 C -0.144 4.144
15 N -0.533 5.533
16 Si 0.722 3.278
17 H -0.197 1.197
18 H -0.210 1.210
19 H -0.209 1.209
20 C -0.128 4.128
21 C -0.136 4.136
22 C -0.052 4.052
23 C -0.108 4.108
24 C -0.122 4.122
25 C -0.163 4.163
26 C 0.054 3.946
27 O -0.312 6.312
28 C -0.154 4.154
29 H 0.085 0.915
30 H 0.090 0.910
31 H 0.085 0.915
32 H 0.240 0.760
33 H 0.132 0.868
34 H 0.140 0.860
35 H 0.047 0.953
36 H 0.047 0.953
37 H 0.071 0.929
38 H 0.139 0.861
39 H 0.145 0.855
40 H 0.141 0.859
41 H 0.145 0.855
42 H 0.144 0.856
43 H 0.246 0.754
44 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -7.350 8.283 -24.728 27.095
hybrid contribution 0.823 0.908 1.011 1.588
sum -6.528 9.191 -23.718 26.260
Atomic orbital electron populations
1.21814 0.91603 1.03436 1.03078 1.20295 0.97992 1.00284 0.90592
0.87573 1.20512 0.80601 0.84855 0.84140 1.90742 1.35808 1.25754
1.86184 1.43345 1.56884 1.26333 1.04565 1.17525 0.94898 0.99833
0.86822 1.20749 0.98666 1.02849 0.93974 1.20885 0.97273 0.97591
0.97061 1.20722 0.92330 0.95052 0.96051 1.18362 0.97127 0.94705
0.88781 1.21099 1.34174 0.97031 1.02500 0.92424 1.25024 0.96300
0.95134 0.97972 1.69970 1.46147 1.13932 1.23265 0.86487 0.79702
0.80901 0.80661 1.19689 1.20954 1.20946 1.21022 0.99814 0.99626
0.92367 1.21117 0.94812 0.98974 0.98738 1.19125 0.97561 0.94240
0.94289 1.20973 0.99404 0.93745 0.96716 1.21017 0.97394 0.99952
0.93882 1.21418 1.00699 0.93770 1.00364 1.18351 0.96246 0.90478
0.89481 1.84812 1.21254 1.74494 1.50606 1.21239 0.99869 1.00570
0.93752 0.91459 0.90983 0.91549 0.76027 0.86835 0.86021 0.95312
0.95303 0.92901 0.86141 0.85459 0.85861 0.85502 0.85570 0.75440
0.85514
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.91 8.91 37.15 0.33 -0.58 16
2 C -0.07 -0.60 2.90 -92.93 -0.27 -0.87 16
3 H 0.11 0.68 7.87 -51.93 -0.41 0.27 16
4 C 0.51 6.28 6.87 -10.98 -0.08 6.21 16
5 O -0.51 -8.30 12.52 5.56 0.07 -8.23 16
6 N -0.67 -7.87 5.19 -9.86 -0.05 -7.92 16
7 C 0.10 1.62 6.30 -83.70 -0.53 1.09 16
8 C -0.14 -2.26 9.97 -39.39 -0.39 -2.65 16
9 C -0.11 -2.09 9.69 -39.61 -0.38 -2.47 16
10 C -0.04 -0.90 5.07 -104.59 -0.53 -1.43 16
11 C 0.05 1.21 5.10 -29.04 -0.15 1.07 16
12 C -0.51 -14.26 9.09 -34.44 -0.31 -14.57 16
13 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16
14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16
15 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16
16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16
17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
20 C -0.11 -2.24 9.69 -39.61 -0.38 -2.62 16
21 C -0.12 -2.14 8.70 -39.40 -0.34 -2.48 16
22 C -0.05 -0.52 4.40 -104.65 -0.46 -0.98 16
23 C -0.09 -0.96 7.92 -39.56 -0.31 -1.27 16
24 C -0.10 -1.00 10.04 -39.60 -0.40 -1.40 16
25 C -0.14 -1.35 9.99 -39.44 -0.39 -1.74 16
26 C 0.10 0.96 6.70 -39.22 -0.26 0.70 16
27 O -0.50 -4.27 13.50 -19.43 -0.26 -4.53 16
28 C -0.14 -1.30 9.61 -39.43 -0.38 -1.68 16
29 H 0.07 0.34 7.66 -51.93 -0.40 -0.06 16
30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
31 H 0.07 0.48 7.40 -51.93 -0.38 0.10 16
32 H 0.40 3.30 8.38 -40.82 -0.34 2.95 16
33 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16
34 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16
35 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16
36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16
37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16
38 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16
39 H 0.13 2.34 6.23 -52.48 -0.33 2.01 16
40 H 0.12 1.32 7.51 -52.49 -0.39 0.92 16
41 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16
42 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16
43 H 0.39 1.59 9.06 45.56 0.41 2.01 16
44 H 0.13 1.01 7.94 -52.48 -0.42 0.59 16
LS Contribution 374.48 15.07 5.64 5.64
Total: -1.00 -34.24 374.48 -9.40 -43.64
By element:
Atomic # 1 Polarization: 9.95 SS G_CDS: -5.18 Total: 4.78 kcal
Atomic # 6 Polarization: -18.83 SS G_CDS: -5.34 Total: -24.17 kcal
Atomic # 7 Polarization: -34.31 SS G_CDS: 0.69 Total: -33.63 kcal
Atomic # 8 Polarization: -12.56 SS G_CDS: -0.19 Total: -12.76 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -34.24 -9.40 -43.64 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001303798014.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.263 kcal
(2) G-P(sol) polarization free energy of solvation -34.244 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.981 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.382 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds