Wall clock time and date at job start Tue Mar 31 2020 16:34:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09001 * 109.47190 * 2 1
4 4 C 1.50700 * 109.47369 * 119.99835 * 2 1 3
5 5 O 1.21278 * 120.00197 * 120.00231 * 4 2 1
6 6 N 1.34783 * 119.99861 * 300.27610 * 4 2 1
7 7 C 1.39925 * 119.99569 * 175.08775 * 6 4 2
8 8 C 1.38877 * 120.06566 * 214.80845 * 7 6 4
9 9 C 1.38117 * 119.92300 * 179.70289 * 8 7 6
10 10 C 1.38273 * 120.07183 * 0.57669 * 9 8 7
11 11 C 1.50702 * 119.92887 * 179.69848 * 10 9 8
12 12 C 1.50697 * 109.47142 * 270.02296 * 11 10 9
13 13 H 1.07997 * 120.00131 * 0.02562 * 12 11 10
14 14 C 1.37879 * 119.99714 * 179.97438 * 12 11 10
15 15 N 1.31519 * 120.00292 * 0.02562 * 14 12 11
16 16 Si 1.86797 * 119.99811 * 180.02562 * 14 12 11
17 17 H 1.48503 * 109.47409 * 359.97438 * 16 14 12
18 18 H 1.48502 * 109.47455 * 119.99866 * 16 14 12
19 19 H 1.48505 * 109.47159 * 240.00076 * 16 14 12
20 20 C 1.38283 * 120.14396 * 359.72435 * 10 9 8
21 21 C 1.38116 * 120.06620 * 359.97438 * 20 10 9
22 22 C 1.50703 * 109.47400 * 239.99852 * 2 1 3
23 23 C 1.38280 * 119.97116 * 299.73005 * 22 2 1
24 24 C 1.38254 * 120.11083 * 179.72591 * 23 22 2
25 25 C 1.38160 * 120.05188 * 0.54086 * 24 23 22
26 26 C 1.38708 * 119.94791 * 359.73125 * 25 24 23
27 27 O 1.35901 * 120.05997 * 179.97438 * 26 25 24
28 28 C 1.38123 * 119.97064 * 119.99693 * 22 2 1
29 29 H 1.08995 * 109.47432 * 299.99830 * 1 2 3
30 30 H 1.08995 * 109.47395 * 60.00458 * 1 2 3
31 31 H 1.09001 * 109.47190 * 180.02562 * 1 2 3
32 32 H 0.96993 * 119.99699 * 355.09336 * 6 4 2
33 33 H 1.07999 * 120.03517 * 359.97438 * 8 7 6
34 34 H 1.08005 * 119.95855 * 180.30071 * 9 8 7
35 35 H 1.09004 * 109.47187 * 30.02895 * 11 10 9
36 36 H 1.09006 * 109.47059 * 150.02171 * 11 10 9
37 37 H 0.97002 * 120.00181 * 180.02562 * 15 14 12
38 38 H 1.08003 * 119.96617 * 179.97438 * 20 10 9
39 39 H 1.08007 * 120.02861 * 179.97438 * 21 20 10
40 40 H 1.08000 * 119.94356 * 359.96975 * 23 22 2
41 41 H 1.07994 * 119.97164 * 180.25038 * 24 23 22
42 42 H 1.07999 * 120.02891 * 179.70366 * 25 24 23
43 43 H 0.96705 * 113.99658 * 270.02218 * 27 26 25
44 44 H 1.08004 * 120.02809 * 0.02585 * 28 22 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 8 2.7296 -1.6964 1.1192
6 7 1.7022 -0.2531 2.4546
7 6 2.0818 -0.9697 3.5949
8 6 1.2494 -1.0010 4.7061
9 6 1.6243 -1.7143 5.8279
10 6 2.8323 -2.3868 5.8496
11 6 3.2412 -3.1585 7.0778
12 6 4.0136 -2.2554 8.0045
13 1 4.1903 -1.2255 7.7316
14 6 4.4937 -2.7437 9.2012
15 7 4.2780 -3.9977 9.5338
16 14 5.4505 -1.6240 10.3502
17 1 5.5557 -0.2705 9.7485
18 1 4.7452 -1.5332 11.6539
19 1 6.8119 -2.1784 10.5615
20 6 3.6662 -2.3524 4.7471
21 6 3.2943 -1.6461 3.6200
22 6 2.0324 -0.7104 -1.2304
23 6 1.7026 -2.0360 -1.4458
24 6 2.1572 -2.6889 -2.5765
25 6 2.9517 -2.0213 -3.4886
26 6 3.2886 -0.6933 -3.2720
27 8 4.0704 -0.0345 -4.1674
28 6 2.8264 -0.0386 -2.1393
29 1 -0.3634 0.5138 0.8899
30 1 -0.3634 0.5137 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 1.2013 0.5726 2.5450
33 1 0.3081 -0.4719 4.6915
34 1 0.9751 -1.7431 6.6906
35 1 2.3514 -3.5275 7.5881
36 1 3.8680 -4.0011 6.7856
37 1 4.6155 -4.3411 10.3758
38 1 4.6093 -2.8784 4.7674
39 1 3.9463 -1.6192 2.7593
40 1 1.0856 -2.5609 -0.7316
41 1 1.8950 -3.7229 -2.7445
42 1 3.3106 -2.5331 -4.3693
43 1 5.0178 -0.0992 -3.9846
44 1 3.0875 0.9953 -1.9681
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001303798014.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 16:34:55
Heat of formation + Delta-G solvation = -59.883556 kcal
Electronic energy + Delta-G solvation = -25831.159028 eV
Core-core repulsion = 22098.039379 eV
Total energy + Delta-G solvation = -3733.119649 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 325.146 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.81719 -40.62438 -39.56423 -37.77115 -36.24809 -35.20439 -34.72499 -32.21755
-31.76367 -31.19500 -29.99582 -28.42586 -25.98462 -25.01489 -23.83602 -23.57433
-23.13730 -21.83839 -20.98789 -19.27265 -18.52774 -18.33812 -18.00235 -17.37060
-16.83902 -16.75624 -16.26577 -16.13354 -15.92527 -15.58080 -15.39640 -14.84600
-14.57198 -14.50849 -14.37734 -14.27336 -13.79045 -13.61995 -13.29947 -13.17742
-13.09938 -13.07911 -12.82349 -12.64038 -12.48403 -12.44482 -12.22566 -12.00379
-11.63169 -11.52176 -11.38361 -11.02971 -10.67111 -10.60658 -9.83117 -9.75224
-9.51427 -8.87933 -8.18787 -6.33530 0.27896 0.36186 0.45644 0.57781
1.39290 1.39910 1.53354 1.60628 2.05789 2.39761 2.72673 3.00170
3.10414 3.26696 3.51147 3.76028 3.94933 4.08999 4.13635 4.16838
4.22122 4.27371 4.35650 4.39028 4.58681 4.61828 4.66848 4.75604
4.81166 4.86855 4.98100 5.04170 5.13005 5.25853 5.32240 5.34351
5.42671 5.43789 5.46499 5.49981 5.59650 5.61496 5.75515 5.88516
6.08464 6.12607 6.25604 6.49395 6.79487 6.84321 7.18625 7.35003
8.89427
Molecular weight = 325.15amu
Principal moments of inertia in cm(-1)
A = 0.022699 B = 0.002192 C = 0.002135
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1233.251695 B =12770.367401 C =13108.851523
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.059 4.059
3 H 0.137 0.863
4 C 0.512 3.488
5 O -0.553 6.553
6 N -0.653 5.653
7 C 0.120 3.880
8 C -0.125 4.125
9 C -0.115 4.115
10 C -0.075 4.075
11 C 0.057 3.943
12 C -0.525 4.525
13 H 0.055 0.945
14 C 0.002 3.998
15 N -0.931 5.931
16 Si 0.967 3.033
17 H -0.264 1.264
18 H -0.274 1.274
19 H -0.278 1.278
20 C -0.123 4.123
21 C -0.124 4.124
22 C -0.061 4.061
23 C -0.110 4.110
24 C -0.113 4.113
25 C -0.154 4.154
26 C 0.093 3.907
27 O -0.510 6.510
28 C -0.144 4.144
29 H 0.088 0.912
30 H 0.086 0.914
31 H 0.053 0.947
32 H 0.428 0.572
33 H 0.161 0.839
34 H 0.126 0.874
35 H 0.007 0.993
36 H -0.003 1.003
37 H 0.265 0.735
38 H 0.106 0.894
39 H 0.126 0.874
40 H 0.115 0.885
41 H 0.139 0.861
42 H 0.140 0.860
43 H 0.408 0.592
44 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.428 12.136 -25.733 29.673
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.080 4.080
3 H 0.154 0.846
4 C 0.300 3.700
5 O -0.430 6.430
6 N -0.300 5.300
7 C 0.026 3.974
8 C -0.145 4.145
9 C -0.134 4.134
10 C -0.075 4.075
11 C 0.020 3.980
12 C -0.563 4.563
13 H 0.074 0.926
14 C -0.196 4.196
15 N -0.572 5.572
16 Si 0.791 3.209
17 H -0.188 1.188
18 H -0.200 1.200
19 H -0.204 1.204
20 C -0.142 4.142
21 C -0.144 4.144
22 C -0.062 4.062
23 C -0.128 4.128
24 C -0.131 4.131
25 C -0.172 4.172
26 C 0.048 3.952
27 O -0.323 6.323
28 C -0.162 4.162
29 H 0.107 0.893
30 H 0.105 0.895
31 H 0.072 0.928
32 H 0.267 0.733
33 H 0.179 0.821
34 H 0.144 0.856
35 H 0.025 0.975
36 H 0.016 0.984
37 H 0.074 0.926
38 H 0.125 0.875
39 H 0.144 0.856
40 H 0.133 0.867
41 H 0.157 0.843
42 H 0.158 0.842
43 H 0.267 0.733
44 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -8.459 11.485 -26.010 29.664
hybrid contribution 1.149 -0.087 1.235 1.689
sum -7.310 11.398 -24.775 28.233
Atomic orbital electron populations
1.21852 0.89744 1.03240 1.04883 1.20337 0.99313 1.00812 0.87555
0.84572 1.21260 0.79438 0.84267 0.84987 1.90740 1.37704 1.27796
1.86759 1.43273 1.56703 1.26784 1.03197 1.17591 0.93499 0.98260
0.88071 1.21061 0.99914 1.01373 0.92173 1.20988 0.96132 0.97642
0.98601 1.20400 0.94651 0.97404 0.95077 1.18096 0.95373 0.94103
0.90462 1.21406 1.34505 0.97169 1.03236 0.92640 1.25965 0.97259
0.96668 0.99736 1.70096 1.47259 1.15808 1.23992 0.85366 0.78143
0.78957 0.78401 1.18814 1.19961 1.20390 1.20924 0.99491 1.00663
0.93114 1.21114 0.96160 0.99438 0.97683 1.19334 0.97637 0.94169
0.95013 1.21068 1.00154 0.94468 0.97081 1.21239 0.97356 1.00718
0.93787 1.21632 1.00683 0.94048 1.00848 1.18523 0.96365 0.90648
0.89643 1.84758 1.22716 1.74311 1.50486 1.21459 0.99620 1.01455
0.93661 0.89313 0.89542 0.92791 0.73295 0.82124 0.85618 0.97498
0.98431 0.92586 0.87546 0.85648 0.86719 0.84269 0.84230 0.73290
0.83780
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.30 8.91 71.98 0.64 -0.66 16
2 C -0.06 -0.82 2.90 -12.29 -0.04 -0.85 16
3 H 0.14 1.11 7.87 -2.39 -0.02 1.09 16
4 C 0.51 11.32 6.87 87.66 0.60 11.92 16
5 O -0.55 -17.55 12.52 -3.02 -0.04 -17.58 16
6 N -0.65 -13.12 5.19 -303.51 -1.58 -14.69 16
7 C 0.12 3.54 6.30 38.15 0.24 3.78 16
8 C -0.13 -3.61 9.97 22.39 0.22 -3.39 16
9 C -0.12 -4.32 9.69 22.25 0.22 -4.11 16
10 C -0.07 -3.39 5.07 -19.84 -0.10 -3.49 16
11 C 0.06 3.11 5.10 29.10 0.15 3.25 16
12 C -0.53 -30.39 9.09 25.60 0.23 -30.15 16
13 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16
14 C 0.00 0.09 5.46 84.65 0.46 0.55 16
15 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16
16 Si 0.97 44.59 29.54 68.60 2.03 46.62 16
17 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16
18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16
19 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16
20 C -0.12 -5.25 9.69 22.25 0.22 -5.03 16
21 C -0.12 -4.54 8.70 22.39 0.19 -4.34 16
22 C -0.06 -1.11 4.40 -19.88 -0.09 -1.20 16
23 C -0.11 -2.26 7.92 22.28 0.18 -2.08 16
24 C -0.11 -2.12 10.04 22.25 0.22 -1.89 16
25 C -0.15 -2.73 9.99 22.36 0.22 -2.51 16
26 C 0.09 1.66 6.70 22.51 0.15 1.81 16
27 O -0.51 -7.76 13.50 -92.43 -1.25 -9.00 16
28 C -0.14 -2.46 9.61 22.37 0.21 -2.25 16
29 H 0.09 0.45 7.66 -2.39 -0.02 0.44 16
30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16
31 H 0.05 0.66 7.40 -2.39 -0.02 0.64 16
32 H 0.43 4.80 8.38 -92.71 -0.78 4.03 16
33 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16
34 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16
35 H 0.01 0.39 8.08 -2.39 -0.02 0.37 16
36 H 0.00 -0.16 8.08 -2.38 -0.02 -0.18 16
37 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16
38 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16
39 H 0.13 4.64 6.23 -2.91 -0.02 4.63 16
40 H 0.11 2.47 7.51 -2.91 -0.02 2.45 16
41 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16
42 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16
43 H 0.41 2.61 9.06 -74.05 -0.67 1.94 16
44 H 0.14 1.86 7.94 -2.91 -0.02 1.84 16
Total: -1.00 -77.54 374.48 2.98 -74.57
By element:
Atomic # 1 Polarization: 17.70 SS G_CDS: -0.41 Total: 17.29 kcal
Atomic # 6 Polarization: -44.59 SS G_CDS: 3.94 Total: -40.65 kcal
Atomic # 7 Polarization: -69.94 SS G_CDS: -1.29 Total: -71.23 kcal
Atomic # 8 Polarization: -25.30 SS G_CDS: -1.29 Total: -26.59 kcal
Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal
Total: -77.54 2.98 -74.57 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001303798014.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.682 kcal
(2) G-P(sol) polarization free energy of solvation -77.543 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.861 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.884 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds