Wall clock time and date at job start Tue Mar 31 2020 16:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47089 * 2 1 4 4 C 1.50700 * 109.46988 * 239.99771 * 2 1 3 5 5 O 1.21281 * 120.00122 * 240.00216 * 4 2 1 6 6 N 1.34783 * 119.99763 * 60.00475 * 4 2 1 7 7 C 1.39920 * 119.99800 * 184.63474 * 6 4 2 8 8 C 1.38870 * 120.07415 * 144.91287 * 7 6 4 9 9 C 1.38117 * 119.92921 * 180.29683 * 8 7 6 10 10 C 1.38279 * 120.07054 * 359.41923 * 9 8 7 11 11 C 1.50697 * 119.92978 * 180.28075 * 10 9 8 12 12 C 1.50702 * 109.47148 * 270.31787 * 11 10 9 13 13 H 1.07996 * 119.99641 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99895 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00393 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99809 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46982 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47289 * 120.00155 * 16 14 12 19 19 H 1.48500 * 109.47280 * 240.00131 * 16 14 12 20 20 C 1.38284 * 120.13889 * 0.59876 * 10 9 8 21 21 C 1.38114 * 120.07387 * 359.68353 * 20 10 9 22 22 C 1.50696 * 109.47013 * 119.99909 * 2 1 3 23 23 C 1.38291 * 119.97193 * 59.99690 * 22 2 1 24 24 C 1.38244 * 120.11273 * 179.97438 * 23 22 2 25 25 C 1.38167 * 120.05533 * 0.02562 * 24 23 22 26 26 C 1.38712 * 119.94554 * 0.02562 * 25 24 23 27 27 O 1.35895 * 120.05945 * 180.02562 * 26 25 24 28 28 C 1.38122 * 119.97559 * 239.72431 * 22 2 1 29 29 H 1.09005 * 109.47052 * 300.00269 * 1 2 3 30 30 H 1.08996 * 109.47098 * 59.99775 * 1 2 3 31 31 H 1.08998 * 109.47089 * 179.97438 * 1 2 3 32 32 H 0.96994 * 119.99686 * 4.62682 * 6 4 2 33 33 H 1.07997 * 120.03315 * 0.02562 * 8 7 6 34 34 H 1.07997 * 119.95839 * 179.69917 * 9 8 7 35 35 H 1.08999 * 109.46881 * 30.32056 * 11 10 9 36 36 H 1.08998 * 109.47490 * 150.32164 * 11 10 9 37 37 H 0.96994 * 119.99996 * 179.97438 * 15 14 12 38 38 H 1.08005 * 119.96032 * 179.69703 * 20 10 9 39 39 H 1.07993 * 120.03865 * 179.97438 * 21 20 10 40 40 H 1.07999 * 119.94497 * 359.97438 * 23 22 2 41 41 H 1.08000 * 119.97184 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.02677 * 180.02562 * 25 24 23 43 43 H 0.96699 * 114.00022 * 90.00443 * 27 26 25 44 44 H 1.08005 * 120.02193 * 359.97438 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.0911 -0.9632 -3.5954 8 6 1.2606 -0.9966 -4.7078 9 6 1.6401 -1.7066 -5.8301 10 6 2.8511 -2.3738 -5.8511 11 6 3.2650 -3.1423 -7.0796 12 6 2.7641 -4.5600 -6.9777 13 1 2.2019 -4.8730 -6.1103 14 6 3.0226 -5.4570 -7.9923 15 7 3.7067 -5.0758 -9.0487 16 14 2.4011 -7.2141 -7.8662 17 1 1.6638 -7.3880 -6.5889 18 1 1.4919 -7.5005 -9.0049 19 1 3.5529 -8.1506 -7.9049 20 6 3.6803 -2.3427 -4.7449 21 6 3.3040 -1.6394 -3.6174 22 6 2.0324 -0.7104 1.2304 23 6 1.6979 -2.0343 1.4488 24 6 2.1575 -2.6890 2.5763 25 6 2.9521 -2.0214 3.4884 26 6 3.2882 -0.6931 3.2723 27 8 4.0701 -0.0345 4.1676 28 6 2.8311 -0.0403 2.1364 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.2060 0.5758 -2.5447 33 1 0.3169 -0.4716 -4.6938 34 1 0.9924 -1.7370 -6.6937 35 1 2.8393 -2.6693 -7.9645 36 1 4.3522 -3.1459 -7.1569 37 1 3.8888 -5.7070 -9.7623 38 1 4.6233 -2.8689 -4.7627 39 1 3.9517 -1.6158 -2.7536 40 1 1.0765 -2.5578 0.7372 41 1 1.8952 -3.7231 2.7443 42 1 3.3113 -2.5335 4.3689 43 1 5.0174 -0.0982 3.9842 44 1 3.0960 0.9923 1.9630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001303798015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:01 Heat of formation + Delta-G solvation = -38.170769 kcal Electronic energy + Delta-G solvation = -25917.267295 eV Core-core repulsion = 22185.089182 eV Total energy + Delta-G solvation = -3732.178112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83555 -39.73693 -38.29873 -37.01084 -34.90821 -34.25548 -32.96152 -30.75760 -30.34545 -30.24454 -29.22209 -26.73947 -25.07615 -23.43652 -22.86163 -22.39144 -22.03257 -20.49927 -19.92300 -18.43374 -17.33027 -17.08199 -16.61024 -16.30140 -15.95708 -15.43565 -15.20071 -14.98414 -14.61197 -14.40782 -14.20882 -13.85807 -13.67948 -13.14296 -13.00949 -12.85141 -12.57880 -12.52827 -12.42507 -12.16793 -11.96337 -11.82008 -11.57360 -11.41681 -11.25204 -10.80423 -10.72783 -10.59079 -10.36897 -10.09002 -9.68182 -9.45092 -9.25675 -9.08899 -8.78396 -8.41949 -8.29752 -7.40948 -6.03262 -4.06998 1.01239 1.08504 1.84771 2.05296 2.64096 3.02133 3.30232 3.37853 3.43679 3.47882 3.90814 4.22098 4.36817 4.46213 4.56929 4.68006 4.74527 4.86675 4.90625 5.07986 5.22706 5.30880 5.32942 5.39260 5.42785 5.58396 5.61214 5.70488 5.73382 5.93807 6.04996 6.11210 6.14168 6.19250 6.19970 6.32798 6.55465 6.64209 6.77655 6.90176 7.15693 7.20241 7.36774 7.47952 7.51487 7.70371 7.86165 7.92912 8.15526 8.33343 8.98772 9.56937 11.06368 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.002420 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.452382 B =11565.697782 C =12296.780474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.070 4.070 3 H 0.106 0.894 4 C 0.512 3.488 5 O -0.509 6.509 6 N -0.667 5.667 7 C 0.101 3.899 8 C -0.142 4.142 9 C -0.109 4.109 10 C -0.041 4.041 11 C 0.047 3.953 12 C -0.510 4.510 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.110 4.110 21 C -0.117 4.117 22 C -0.052 4.052 23 C -0.090 4.090 24 C -0.104 4.104 25 C -0.144 4.144 26 C 0.098 3.902 27 O -0.501 6.501 28 C -0.136 4.136 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.404 0.596 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.390 0.610 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 13.787 22.336 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 H 0.124 0.876 4 C 0.298 3.702 5 O -0.383 6.383 6 N -0.312 5.312 7 C 0.009 3.991 8 C -0.163 4.163 9 C -0.128 4.128 10 C -0.042 4.042 11 C 0.011 3.989 12 C -0.548 4.548 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.128 4.128 21 C -0.137 4.137 22 C -0.052 4.052 23 C -0.108 4.108 24 C -0.122 4.122 25 C -0.162 4.162 26 C 0.054 3.946 27 O -0.312 6.312 28 C -0.154 4.154 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.239 0.761 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.245 0.755 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.715 13.155 22.567 26.544 hybrid contribution -0.073 -0.720 -0.294 0.781 sum -4.788 12.435 22.273 25.955 Atomic orbital electron populations 1.21820 0.91609 1.03483 1.03052 1.20292 0.98000 1.00226 0.90591 0.87587 1.20522 0.80642 0.84860 0.84145 1.90753 1.35744 1.25665 1.86150 1.43338 1.56934 1.26364 1.04544 1.17527 0.94835 0.99940 0.86764 1.20745 0.98529 1.03003 0.93975 1.20884 0.96882 0.97457 0.97564 1.20727 0.92886 0.93220 0.97351 1.18359 0.97338 0.93961 0.89286 1.21109 1.34685 0.94409 1.04573 0.92426 1.25012 0.95213 0.98863 0.95294 1.69963 1.39847 1.35228 1.08349 0.86492 0.78652 0.84571 0.78095 1.19648 1.20957 1.20928 1.21024 1.00417 0.98942 0.92447 1.21125 0.94900 0.99000 0.98647 1.19126 0.97531 0.94269 0.94323 1.20986 0.99357 0.93742 0.96736 1.21026 0.97321 0.99964 0.93895 1.21422 1.00721 0.93733 1.00352 1.18349 0.96302 0.90487 0.89458 1.84810 1.21238 1.74519 1.50592 1.21232 0.99913 1.00565 0.93737 0.90984 0.91468 0.91519 0.76071 0.86838 0.86022 0.95308 0.95308 0.92918 0.86143 0.85458 0.85837 0.85479 0.85566 0.75473 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.91 37.16 0.33 -0.62 16 2 C -0.07 -0.60 2.90 -92.92 -0.27 -0.87 16 3 H 0.11 0.67 7.87 -51.93 -0.41 0.26 16 4 C 0.51 6.39 6.87 -10.98 -0.08 6.31 16 5 O -0.51 -8.50 12.54 5.56 0.07 -8.43 16 6 N -0.67 -7.88 5.19 -9.86 -0.05 -7.93 16 7 C 0.10 1.62 6.30 -83.69 -0.53 1.09 16 8 C -0.14 -2.27 9.97 -39.39 -0.39 -2.66 16 9 C -0.11 -2.08 9.69 -39.61 -0.38 -2.47 16 10 C -0.04 -0.90 5.07 -104.59 -0.53 -1.43 16 11 C 0.05 1.22 5.10 -29.03 -0.15 1.07 16 12 C -0.51 -14.41 9.09 -34.44 -0.31 -14.72 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 16 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.11 -2.24 9.69 -39.61 -0.38 -2.62 16 21 C -0.12 -2.15 8.70 -39.39 -0.34 -2.49 16 22 C -0.05 -0.53 4.39 -104.65 -0.46 -0.99 16 23 C -0.09 -0.99 7.93 -39.56 -0.31 -1.31 16 24 C -0.10 -1.04 10.04 -39.61 -0.40 -1.44 16 25 C -0.14 -1.39 9.99 -39.43 -0.39 -1.78 16 26 C 0.10 0.97 6.70 -39.21 -0.26 0.71 16 27 O -0.50 -4.32 13.50 -19.41 -0.26 -4.58 16 28 C -0.14 -1.32 9.61 -39.43 -0.38 -1.70 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.35 7.67 -51.93 -0.40 -0.05 16 31 H 0.07 0.52 7.39 -51.93 -0.38 0.13 16 32 H 0.40 3.23 8.39 -40.82 -0.34 2.88 16 33 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 35 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 39 H 0.13 2.34 6.22 -52.49 -0.33 2.01 16 40 H 0.12 1.40 7.51 -52.49 -0.39 1.00 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 43 H 0.39 1.62 9.06 45.56 0.41 2.03 16 44 H 0.13 1.01 7.94 -52.48 -0.42 0.59 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -34.55 374.51 -9.40 -43.95 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.18 Total: 4.77 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -5.34 Total: -24.39 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.69 Total: -33.72 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.19 Total: -13.01 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.55 -9.40 -43.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303798015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.781 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds