Wall clock time and date at job start Tue Mar 31 2020 16:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47089 * 2 1 4 4 C 1.50700 * 109.46988 * 239.99771 * 2 1 3 5 5 O 1.21281 * 120.00122 * 240.00216 * 4 2 1 6 6 N 1.34783 * 119.99763 * 60.00475 * 4 2 1 7 7 C 1.39920 * 119.99800 * 184.63474 * 6 4 2 8 8 C 1.38870 * 120.07415 * 144.91287 * 7 6 4 9 9 C 1.38117 * 119.92921 * 180.29683 * 8 7 6 10 10 C 1.38279 * 120.07054 * 359.41923 * 9 8 7 11 11 C 1.50697 * 119.92978 * 180.28075 * 10 9 8 12 12 C 1.50702 * 109.47148 * 270.31787 * 11 10 9 13 13 H 1.07996 * 119.99641 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99895 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00393 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99809 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46982 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47289 * 120.00155 * 16 14 12 19 19 H 1.48500 * 109.47280 * 240.00131 * 16 14 12 20 20 C 1.38284 * 120.13889 * 0.59876 * 10 9 8 21 21 C 1.38114 * 120.07387 * 359.68353 * 20 10 9 22 22 C 1.50696 * 109.47013 * 119.99909 * 2 1 3 23 23 C 1.38291 * 119.97193 * 59.99690 * 22 2 1 24 24 C 1.38244 * 120.11273 * 179.97438 * 23 22 2 25 25 C 1.38167 * 120.05533 * 0.02562 * 24 23 22 26 26 C 1.38712 * 119.94554 * 0.02562 * 25 24 23 27 27 O 1.35895 * 120.05945 * 180.02562 * 26 25 24 28 28 C 1.38122 * 119.97559 * 239.72431 * 22 2 1 29 29 H 1.09005 * 109.47052 * 300.00269 * 1 2 3 30 30 H 1.08996 * 109.47098 * 59.99775 * 1 2 3 31 31 H 1.08998 * 109.47089 * 179.97438 * 1 2 3 32 32 H 0.96994 * 119.99686 * 4.62682 * 6 4 2 33 33 H 1.07997 * 120.03315 * 0.02562 * 8 7 6 34 34 H 1.07997 * 119.95839 * 179.69917 * 9 8 7 35 35 H 1.08999 * 109.46881 * 30.32056 * 11 10 9 36 36 H 1.08998 * 109.47490 * 150.32164 * 11 10 9 37 37 H 0.96994 * 119.99996 * 179.97438 * 15 14 12 38 38 H 1.08005 * 119.96032 * 179.69703 * 20 10 9 39 39 H 1.07993 * 120.03865 * 179.97438 * 21 20 10 40 40 H 1.07999 * 119.94497 * 359.97438 * 23 22 2 41 41 H 1.08000 * 119.97184 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.02677 * 180.02562 * 25 24 23 43 43 H 0.96699 * 114.00022 * 90.00443 * 27 26 25 44 44 H 1.08005 * 120.02193 * 359.97438 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1192 6 7 1.7068 -0.2499 -2.4546 7 6 2.0911 -0.9632 -3.5954 8 6 1.2606 -0.9966 -4.7078 9 6 1.6401 -1.7066 -5.8301 10 6 2.8511 -2.3738 -5.8511 11 6 3.2650 -3.1423 -7.0796 12 6 2.7641 -4.5600 -6.9777 13 1 2.2019 -4.8730 -6.1103 14 6 3.0226 -5.4570 -7.9923 15 7 3.7067 -5.0758 -9.0487 16 14 2.4011 -7.2141 -7.8662 17 1 1.6638 -7.3880 -6.5889 18 1 1.4919 -7.5005 -9.0049 19 1 3.5529 -8.1506 -7.9049 20 6 3.6803 -2.3427 -4.7449 21 6 3.3040 -1.6394 -3.6174 22 6 2.0324 -0.7104 1.2304 23 6 1.6979 -2.0343 1.4488 24 6 2.1575 -2.6890 2.5763 25 6 2.9521 -2.0214 3.4884 26 6 3.2882 -0.6931 3.2723 27 8 4.0701 -0.0345 4.1676 28 6 2.8311 -0.0403 2.1364 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.2060 0.5758 -2.5447 33 1 0.3169 -0.4716 -4.6938 34 1 0.9924 -1.7370 -6.6937 35 1 2.8393 -2.6693 -7.9645 36 1 4.3522 -3.1459 -7.1569 37 1 3.8888 -5.7070 -9.7623 38 1 4.6233 -2.8689 -4.7627 39 1 3.9517 -1.6158 -2.7536 40 1 1.0765 -2.5578 0.7372 41 1 1.8952 -3.7231 2.7443 42 1 3.3113 -2.5335 4.3689 43 1 5.0174 -0.0982 3.9842 44 1 3.0960 0.9923 1.9630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001303798015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:00 Heat of formation + Delta-G solvation = -59.988984 kcal Electronic energy + Delta-G solvation = -25918.213403 eV Core-core repulsion = 22185.089182 eV Total energy + Delta-G solvation = -3733.124221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.81818 -40.62738 -39.56536 -37.77409 -36.25263 -35.21057 -34.73151 -32.22008 -31.76399 -31.19934 -29.99893 -28.42904 -25.99020 -25.01977 -23.83577 -23.57910 -23.14095 -21.83892 -20.99219 -19.27486 -18.53769 -18.34273 -18.00581 -17.37759 -16.84723 -16.75789 -16.26350 -16.13137 -15.93511 -15.58614 -15.39666 -14.85408 -14.59640 -14.48248 -14.37883 -14.26780 -13.87462 -13.50115 -13.33117 -13.21054 -13.12527 -13.07506 -12.83331 -12.63452 -12.48693 -12.45904 -12.22813 -11.99585 -11.65233 -11.54246 -11.38678 -11.00178 -10.69131 -10.61006 -9.83537 -9.75279 -9.52021 -8.88185 -8.19886 -6.34324 0.27205 0.35721 0.45467 0.57708 1.37501 1.38285 1.51779 1.60430 2.05752 2.38722 2.72188 3.00269 3.09102 3.26366 3.50794 3.75779 3.94449 4.08965 4.13309 4.17200 4.21554 4.27078 4.34987 4.39143 4.58157 4.61940 4.67071 4.75727 4.80781 4.86389 4.97593 5.03791 5.13225 5.25483 5.32065 5.34324 5.42165 5.43809 5.46019 5.49948 5.59250 5.61294 5.75046 5.87881 6.08569 6.12522 6.25578 6.49593 6.78402 6.84446 7.19159 7.34127 8.88012 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.002420 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.452382 B =11565.697782 C =12296.780474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 H 0.139 0.861 4 C 0.511 3.489 5 O -0.554 6.554 6 N -0.652 5.652 7 C 0.119 3.881 8 C -0.126 4.126 9 C -0.115 4.115 10 C -0.075 4.075 11 C 0.057 3.943 12 C -0.527 4.527 13 H 0.050 0.950 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.964 3.036 17 H -0.268 1.268 18 H -0.272 1.272 19 H -0.277 1.277 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.061 4.061 23 C -0.111 4.111 24 C -0.114 4.114 25 C -0.154 4.154 26 C 0.093 3.907 27 O -0.509 6.509 28 C -0.142 4.142 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.428 0.572 33 H 0.161 0.839 34 H 0.126 0.874 35 H 0.009 0.991 36 H 0.000 1.000 37 H 0.266 0.734 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.408 0.592 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.674 15.396 24.256 29.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 H 0.157 0.843 4 C 0.300 3.700 5 O -0.431 6.431 6 N -0.299 5.299 7 C 0.026 3.974 8 C -0.145 4.145 9 C -0.134 4.134 10 C -0.075 4.075 11 C 0.020 3.980 12 C -0.565 4.565 13 H 0.069 0.931 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.788 3.212 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.202 1.202 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.062 4.062 23 C -0.129 4.129 24 C -0.132 4.132 25 C -0.172 4.172 26 C 0.049 3.951 27 O -0.322 6.322 28 C -0.161 4.161 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.268 0.732 33 H 0.179 0.821 34 H 0.144 0.856 35 H 0.027 0.973 36 H 0.018 0.982 37 H 0.075 0.925 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.131 0.869 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.267 0.733 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.667 14.812 24.500 29.396 hybrid contribution 0.568 -1.140 -0.765 1.485 sum -6.099 13.672 23.735 28.062 Atomic orbital electron populations 1.21859 0.89822 1.03155 1.04935 1.20339 0.99256 1.00859 0.87486 0.84341 1.21284 0.79456 0.84244 0.85048 1.90750 1.37768 1.27814 1.86762 1.43257 1.56697 1.26832 1.03128 1.17595 0.93448 0.98382 0.88013 1.21057 0.99784 1.01521 0.92169 1.20990 0.95741 0.97527 0.99102 1.20408 0.95168 0.95631 0.96337 1.18090 0.95239 0.93829 0.90808 1.21395 1.34756 0.95938 1.04406 0.93144 1.25908 0.95272 1.03353 0.94831 1.70076 1.40836 1.36896 1.09107 0.85414 0.78309 0.79058 0.78385 1.19238 1.19767 1.20234 1.20929 1.00095 0.99998 0.93182 1.21124 0.96244 0.99459 0.97592 1.19340 0.97593 0.94124 0.95099 1.21065 1.00164 0.94564 0.97082 1.21234 0.97411 1.00675 0.93883 1.21632 1.00690 0.94072 1.00801 1.18515 0.96382 0.90597 0.89623 1.84756 1.22718 1.74295 1.50443 1.21463 0.99538 1.01511 0.93555 0.89476 0.89242 0.92989 0.73239 0.82126 0.85612 0.97270 0.98184 0.92529 0.87536 0.85647 0.86916 0.84424 0.84231 0.73276 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.91 71.98 0.64 -0.73 16 2 C -0.06 -0.82 2.90 -12.28 -0.04 -0.86 16 3 H 0.14 1.09 7.87 -2.39 -0.02 1.07 16 4 C 0.51 11.51 6.87 87.66 0.60 12.11 16 5 O -0.55 -18.07 12.54 -3.03 -0.04 -18.11 16 6 N -0.65 -13.11 5.19 -303.50 -1.58 -14.69 16 7 C 0.12 3.54 6.30 38.15 0.24 3.78 16 8 C -0.13 -3.62 9.97 22.39 0.22 -3.40 16 9 C -0.11 -4.33 9.69 22.25 0.22 -4.11 16 10 C -0.07 -3.40 5.07 -19.84 -0.10 -3.50 16 11 C 0.06 3.14 5.10 29.10 0.15 3.28 16 12 C -0.53 -30.92 9.09 25.60 0.23 -30.69 16 13 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 14 C 0.00 0.26 5.46 84.65 0.46 0.72 16 15 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 16 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 C -0.12 -5.26 9.69 22.25 0.22 -5.04 16 21 C -0.12 -4.55 8.70 22.39 0.19 -4.36 16 22 C -0.06 -1.14 4.39 -19.88 -0.09 -1.23 16 23 C -0.11 -2.38 7.93 22.28 0.18 -2.21 16 24 C -0.11 -2.25 10.04 22.25 0.22 -2.02 16 25 C -0.15 -2.82 9.99 22.37 0.22 -2.60 16 26 C 0.09 1.70 6.70 22.51 0.15 1.85 16 27 O -0.51 -7.77 13.50 -92.37 -1.25 -9.01 16 28 C -0.14 -2.46 9.61 22.37 0.21 -2.24 16 29 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.09 0.48 7.67 -2.39 -0.02 0.46 16 31 H 0.05 0.68 7.39 -2.39 -0.02 0.67 16 32 H 0.43 4.66 8.39 -92.71 -0.78 3.88 16 33 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 35 H 0.01 0.51 8.09 -2.39 -0.02 0.49 16 36 H 0.00 -0.01 8.08 -2.39 -0.02 -0.03 16 37 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 39 H 0.13 4.65 6.22 -2.91 -0.02 4.63 16 40 H 0.11 2.58 7.51 -2.91 -0.02 2.56 16 41 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 43 H 0.41 2.60 9.06 -74.06 -0.67 1.93 16 44 H 0.15 1.85 7.94 -2.91 -0.02 1.82 16 Total: -1.00 -78.26 374.51 2.98 -75.28 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -0.41 Total: 16.84 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 3.94 Total: -41.24 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -1.29 Total: -71.09 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -1.29 Total: -27.12 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -78.26 2.98 -75.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001303798015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.294 kcal (2) G-P(sol) polarization free energy of solvation -78.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds