Wall clock time and date at job start Tue Mar 31 2020 16:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47111 * 2 1 4 4 C 1.50695 * 109.47093 * 239.99502 * 2 1 3 5 5 O 1.21282 * 120.00607 * 240.00068 * 4 2 1 6 6 N 1.34780 * 119.99864 * 60.00625 * 4 2 1 7 7 C 1.46499 * 120.00283 * 179.97438 * 6 4 2 8 8 C 1.50694 * 109.47353 * 180.02562 * 7 6 4 9 9 C 1.38325 * 119.96358 * 269.71962 * 8 7 6 10 10 C 1.38282 * 120.13788 * 179.76171 * 9 8 7 11 11 C 1.38117 * 120.07047 * 0.51918 * 10 9 8 12 12 C 1.38863 * 119.92924 * 359.74098 * 11 10 9 13 13 O 1.35748 * 120.06795 * 179.97438 * 12 11 10 14 14 C 1.34824 * 117.00208 * 354.48412 * 13 12 11 15 15 H 1.07997 * 120.00373 * 5.05795 * 14 13 12 16 16 C 1.38661 * 119.99911 * 185.06286 * 14 13 12 17 17 N 1.31563 * 119.99798 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00057 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46789 * 90.00116 * 18 16 14 20 20 H 1.48499 * 109.46731 * 209.99870 * 18 16 14 21 21 H 1.48497 * 109.46979 * 329.99972 * 18 16 14 22 22 C 1.38078 * 119.96993 * 89.99785 * 8 7 6 23 23 C 1.50704 * 109.46682 * 120.00013 * 2 1 3 24 24 C 1.38235 * 119.99684 * 239.99542 * 23 2 1 25 25 C 1.38232 * 119.99658 * 179.97438 * 24 23 2 26 26 C 1.38232 * 120.00265 * 359.97438 * 25 24 23 27 27 C 1.38235 * 120.00088 * 359.97438 * 26 25 24 28 28 C 1.38232 * 119.99697 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47239 * 300.00379 * 1 2 3 30 30 H 1.09007 * 109.47001 * 60.00055 * 1 2 3 31 31 H 1.08998 * 109.47568 * 180.02562 * 1 2 3 32 32 H 0.97002 * 120.00235 * 359.97438 * 6 4 2 33 33 H 1.09006 * 109.47199 * 299.99861 * 7 6 4 34 34 H 1.08998 * 109.47307 * 59.99505 * 7 6 4 35 35 H 1.08007 * 119.93101 * 0.02562 * 9 8 7 36 36 H 1.08002 * 119.96777 * 180.25344 * 10 9 8 37 37 H 1.08001 * 120.04210 * 179.71995 * 11 10 9 38 38 H 0.96994 * 119.99688 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.03322 * 359.95865 * 22 8 7 40 40 H 1.07994 * 120.00206 * 0.26281 * 24 23 2 41 41 H 1.08005 * 119.99829 * 179.97438 * 25 24 23 42 42 H 1.08007 * 120.00404 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.99944 * 179.97438 * 27 26 25 44 44 H 1.08004 * 119.99889 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1955 -0.9403 -3.6507 8 6 1.6937 -0.2296 -4.8811 9 6 0.4880 -0.5996 -5.4492 10 6 0.0217 0.0534 -6.5754 11 6 0.7643 1.0704 -7.1429 12 6 1.9777 1.4404 -6.5782 13 8 2.7101 2.4392 -7.1340 14 6 2.2610 2.9536 -8.2965 15 1 1.3146 2.6272 -8.7016 16 6 3.0143 3.9018 -8.9720 17 7 2.5762 4.4034 -10.1066 18 14 4.6509 4.4668 -8.2710 19 1 5.7376 3.5969 -8.7882 20 1 4.9053 5.8719 -8.6786 21 1 4.6108 4.3808 -6.7891 22 6 2.4407 0.7862 -5.4438 23 6 2.0322 -0.7104 1.2305 24 6 2.8270 -0.0386 2.1404 25 6 3.2872 -0.6901 3.2694 26 6 2.9523 -2.0132 3.4887 27 6 2.1567 -2.6847 2.5794 28 6 1.6956 -2.0329 1.4509 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.1489 0.5385 -2.5436 33 1 3.2856 -0.9400 -3.6505 34 1 1.8326 -1.9681 -3.6509 35 1 -0.0926 -1.3972 -5.0096 36 1 -0.9221 -0.2349 -7.0142 37 1 0.4018 1.5770 -8.0252 38 1 3.1033 5.0663 -10.5793 39 1 3.3839 1.0720 -5.0021 40 1 3.0845 0.9965 1.9716 41 1 3.9085 -0.1654 3.9801 42 1 3.3122 -2.5224 4.3706 43 1 1.8953 -3.7186 2.7506 44 1 1.0742 -2.5576 0.7402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320052812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:09 Heat of formation + Delta-G solvation = -37.748028 kcal Electronic energy + Delta-G solvation = -25712.992800 eV Core-core repulsion = 21980.833019 eV Total energy + Delta-G solvation = -3732.159781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.39294 -40.88087 -39.63398 -38.54527 -35.77837 -35.14887 -34.45392 -32.25795 -31.75460 -31.02636 -30.17279 -27.55923 -26.95409 -25.40042 -23.48118 -23.35272 -22.80827 -22.20146 -20.93161 -19.70703 -19.06825 -17.95679 -17.81618 -17.02640 -16.82143 -16.80124 -16.31494 -15.91881 -15.83984 -15.62468 -15.50926 -15.06115 -14.68639 -14.57536 -14.42698 -14.20503 -14.14389 -13.89936 -13.75068 -13.41733 -13.14889 -13.10816 -12.97393 -12.60527 -12.50129 -12.45875 -12.38496 -11.94951 -11.84682 -11.77131 -11.32942 -10.94430 -10.84656 -10.10792 -9.80940 -9.74092 -9.59081 -9.12939 -8.50700 -6.23415 0.32273 0.48108 0.56652 0.64042 1.31327 1.34680 1.50903 1.63987 2.25113 2.26825 2.77945 2.96139 2.98538 3.16460 3.58797 3.72381 3.83857 4.04280 4.08843 4.15970 4.24572 4.27022 4.31138 4.36050 4.41517 4.49054 4.64165 4.65647 4.70385 4.72085 4.85364 4.92104 4.94703 5.14444 5.18027 5.19947 5.25934 5.35475 5.39470 5.60494 5.62234 5.66457 5.68295 5.72449 5.74463 5.88502 6.15750 6.18541 6.55125 6.83768 7.23229 7.57630 8.60614 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019389 B = 0.002297 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.793165 B =12187.849520 C =13066.561230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 H 0.123 0.877 4 C 0.517 3.483 5 O -0.574 6.574 6 N -0.713 5.713 7 C 0.174 3.826 8 C -0.060 4.060 9 C -0.158 4.158 10 C -0.073 4.073 11 C -0.228 4.228 12 C 0.119 3.881 13 O -0.245 6.245 14 C -0.398 4.398 15 H 0.084 0.916 16 C 0.010 3.990 17 N -0.922 5.922 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.268 1.268 21 H -0.262 1.262 22 C -0.170 4.170 23 C -0.081 4.081 24 C -0.125 4.125 25 C -0.131 4.131 26 C -0.129 4.129 27 C -0.136 4.136 28 C -0.103 4.103 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.413 0.587 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.110 0.890 38 H 0.284 0.716 39 H 0.122 0.878 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.133 0.867 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -10.467 25.637 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 H 0.141 0.859 4 C 0.304 3.696 5 O -0.453 6.453 6 N -0.365 5.365 7 C 0.051 3.949 8 C -0.060 4.060 9 C -0.177 4.177 10 C -0.091 4.091 11 C -0.247 4.247 12 C 0.070 3.930 13 O -0.153 6.153 14 C -0.474 4.474 15 H 0.101 0.899 16 C -0.188 4.188 17 N -0.562 5.562 18 Si 0.791 3.209 19 H -0.194 1.194 20 H -0.193 1.193 21 H -0.187 1.187 22 C -0.190 4.190 23 C -0.082 4.082 24 C -0.143 4.143 25 C -0.149 4.149 26 C -0.146 4.146 27 C -0.153 4.153 28 C -0.121 4.121 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.249 0.751 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.151 0.849 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.695 -10.925 25.600 28.078 hybrid contribution 0.308 0.826 -0.871 1.239 sum -3.387 -10.100 24.730 26.926 Atomic orbital electron populations 1.21804 0.90250 1.03130 1.04257 1.20345 0.99069 1.00549 0.88866 0.85945 1.20961 0.79428 0.84172 0.85040 1.90707 1.39338 1.28046 1.87186 1.46017 1.53507 1.32406 1.04572 1.20020 0.98774 0.95498 0.80618 1.19456 0.94943 0.95300 0.96345 1.21031 0.96562 1.02595 0.97523 1.21144 0.99234 0.93499 0.95244 1.21402 0.96748 1.03003 1.03588 1.19578 0.91352 0.88338 0.93721 1.83518 1.49307 1.45811 1.36620 1.20697 1.06767 1.23000 0.96915 0.89873 1.25258 1.02588 0.95890 0.95103 1.69725 1.40736 1.29958 1.15804 0.85247 0.78228 0.77962 0.79473 1.19356 1.19266 1.18654 1.20269 1.02195 0.99580 0.96946 1.19517 0.98665 0.94631 0.95343 1.21314 0.97453 1.00809 0.94702 1.21418 1.00285 0.95284 0.97901 1.21457 0.98120 0.95125 0.99940 1.21383 0.98638 1.00656 0.94668 1.21011 0.99761 0.94333 0.96974 0.89983 0.90262 0.92365 0.75073 0.91659 0.89745 0.83308 0.83811 0.87205 0.90596 0.86026 0.84559 0.84066 0.84184 0.84880 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.90 71.98 0.64 -1.02 16 2 C -0.07 -1.11 2.90 -12.29 -0.04 -1.14 16 3 H 0.12 1.58 7.88 -2.39 -0.02 1.56 16 4 C 0.52 11.71 7.02 87.65 0.62 12.33 16 5 O -0.57 -17.65 15.12 -3.04 -0.05 -17.69 16 6 N -0.71 -14.66 5.44 -466.79 -2.54 -17.20 16 7 C 0.17 4.16 5.80 85.63 0.50 4.66 16 8 C -0.06 -1.67 5.25 -19.88 -0.10 -1.78 16 9 C -0.16 -4.12 9.70 22.30 0.22 -3.90 16 10 C -0.07 -2.24 10.04 22.25 0.22 -2.02 16 11 C -0.23 -9.31 9.17 22.39 0.21 -9.10 16 12 C 0.12 5.26 6.65 22.58 0.15 5.42 16 13 O -0.24 -12.88 8.59 -22.66 -0.19 -13.07 16 14 C -0.40 -22.80 9.95 67.92 0.68 -22.13 16 15 H 0.08 4.97 5.44 -2.91 -0.02 4.96 16 16 C 0.01 0.58 5.49 84.83 0.47 1.05 16 17 N -0.92 -54.18 13.96 21.62 0.30 -53.88 16 18 Si 0.97 44.80 28.62 68.60 1.96 46.76 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 22 C -0.17 -6.09 9.64 22.39 0.22 -5.87 16 23 C -0.08 -1.58 4.39 -19.87 -0.09 -1.67 16 24 C -0.12 -2.17 9.67 22.27 0.22 -1.96 16 25 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 26 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 27 C -0.14 -2.46 10.05 22.27 0.22 -2.24 16 28 C -0.10 -2.12 7.93 22.27 0.18 -1.95 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.77 7.56 -2.38 -0.02 0.75 16 31 H 0.06 0.78 7.38 -2.39 -0.02 0.76 16 32 H 0.41 7.01 7.88 -92.71 -0.73 6.28 16 33 H 0.07 1.71 8.08 -2.38 -0.02 1.70 16 34 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16 35 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 36 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.11 4.99 5.64 -2.91 -0.02 4.97 16 38 H 0.28 15.37 8.31 -92.71 -0.77 14.59 16 39 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 40 H 0.14 1.81 7.95 -2.91 -0.02 1.79 16 41 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 42 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 43 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.11 2.34 7.52 -2.91 -0.02 2.32 16 Total: -1.00 -70.44 373.91 4.52 -65.92 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.29 Total: 24.19 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 4.74 Total: -35.03 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -2.24 Total: -71.08 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.24 Total: -30.76 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.96 Total: 46.76 kcal Total: -70.44 4.52 -65.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320052812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.172 kcal (2) G-P(sol) polarization free energy of solvation -70.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds