Wall clock time and date at job start Tue Mar 31 2020 16:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 110.81151 * 2 1 4 4 C 1.54709 * 110.75162 * 236.67999 * 2 1 3 5 5 C 1.51649 * 101.95812 * 266.97780 * 4 2 1 6 6 C 1.37737 * 132.16699 * 164.55326 * 5 4 2 7 7 C 1.38352 * 119.97827 * 180.38011 * 6 5 4 8 8 C 1.50699 * 120.11875 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.46824 * 90.00337 * 8 7 6 10 10 C 1.39780 * 119.99496 * 179.97438 * 9 8 7 11 11 C 1.38949 * 120.01086 * 359.72997 * 10 9 8 12 12 C 1.38010 * 119.99575 * 179.72093 * 11 10 9 13 13 C 1.38899 * 120.00644 * 0.55026 * 12 11 10 14 14 O 1.35797 * 119.99722 * 179.70260 * 13 12 11 15 15 C 1.34808 * 116.99915 * 174.47743 * 14 13 12 16 16 H 1.07999 * 120.00309 * 5.05711 * 15 14 13 17 17 C 1.38620 * 119.99711 * 185.05575 * 15 14 13 18 18 N 1.31589 * 120.00002 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00051 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.47250 * 90.00234 * 19 17 15 21 21 H 1.48500 * 109.47150 * 209.99766 * 19 17 15 22 22 H 1.48494 * 109.47231 * 329.99795 * 19 17 15 23 23 C 1.38902 * 120.00975 * 359.72275 * 13 12 11 24 24 C 1.38009 * 120.00809 * 359.97438 * 23 13 12 25 25 C 1.38290 * 119.76430 * 0.02562 * 7 6 5 26 26 C 1.37938 * 120.35284 * 359.85410 * 25 7 6 27 27 C 1.38882 * 107.04074 * 344.59882 * 5 4 2 28 28 O 1.36136 * 111.23459 * 358.92985 * 27 5 4 29 29 H 1.08999 * 109.46823 * 183.31799 * 1 2 3 30 30 H 1.08991 * 109.47183 * 303.32147 * 1 2 3 31 31 H 1.09001 * 109.46392 * 63.32146 * 1 2 3 32 32 H 1.09004 * 110.93468 * 148.80613 * 4 2 1 33 33 H 1.09001 * 110.93873 * 25.15718 * 4 2 1 34 34 H 1.07997 * 120.01427 * 0.36627 * 6 5 4 35 35 H 1.09005 * 109.47023 * 210.00151 * 8 7 6 36 36 H 1.08997 * 109.47100 * 330.00144 * 8 7 6 37 37 H 0.96998 * 120.00312 * 359.97438 * 9 8 7 38 38 H 1.07998 * 119.99969 * 359.97438 * 11 10 9 39 39 H 1.07995 * 119.99777 * 180.25142 * 12 11 10 40 40 H 0.97002 * 119.99628 * 179.97438 * 18 17 15 41 41 H 1.07997 * 119.99740 * 179.97438 * 23 13 12 42 42 H 1.07997 * 120.00414 * 179.97438 * 24 23 13 43 43 H 1.07994 * 119.82580 * 179.82847 * 25 7 6 44 44 H 1.07993 * 119.88079 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0782 -0.7947 -1.2089 5 6 2.2626 -2.1789 -0.6174 6 6 2.4522 -3.4141 -1.1966 7 6 2.5868 -4.5376 -0.4005 8 6 2.7938 -5.8907 -1.0308 9 7 4.2283 -6.1379 -1.1963 10 6 4.6699 -7.3367 -1.7635 11 6 3.7487 -8.2963 -2.1652 12 6 4.1848 -9.4774 -2.7304 13 6 5.5449 -9.7118 -2.8873 14 8 5.9740 -10.8766 -3.4379 15 6 7.2972 -10.9943 -3.6671 16 1 7.9731 -10.2179 -3.3403 17 6 7.7904 -12.1119 -4.3223 18 7 9.0821 -12.2271 -4.5456 19 14 6.6214 -13.4545 -4.8882 20 1 6.1573 -13.1579 -6.2673 21 1 7.3251 -14.7621 -4.8733 22 1 5.4526 -13.5109 -3.9739 23 6 6.4662 -8.7552 -2.4806 24 6 6.0304 -7.5712 -1.9211 25 6 2.5296 -4.4146 0.9758 26 6 2.3423 -3.1782 1.5579 27 6 2.2108 -2.0416 0.7636 28 8 2.0399 -0.7398 1.1236 29 1 -0.3633 -1.0259 0.0595 30 1 -0.3633 0.5645 0.8586 31 1 -0.3632 0.4614 -0.9183 32 1 3.0306 -0.3846 -1.5450 33 1 1.3545 -0.8125 -2.0238 34 1 2.4956 -3.5057 -2.2718 35 1 2.3641 -6.6600 -0.3891 36 1 2.3059 -5.9161 -2.0052 37 1 4.8716 -5.4698 -0.9124 38 1 2.6914 -8.1162 -2.0388 39 1 3.4688 -10.2215 -3.0464 40 1 9.4272 -13.0093 -5.0037 41 1 7.5236 -8.9378 -2.6023 42 1 6.7468 -6.8276 -1.6045 43 1 2.6318 -5.2913 1.5980 44 1 2.2984 -3.0910 2.6334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334315093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:12 Heat of formation + Delta-G solvation = -20.198182 kcal Electronic energy + Delta-G solvation = -25376.411698 eV Core-core repulsion = 21645.012936 eV Total energy + Delta-G solvation = -3731.398762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.20844 -40.79813 -39.35078 -38.41641 -35.69149 -34.29196 -34.10552 -32.18721 -31.77038 -31.56393 -29.11348 -27.85861 -27.20615 -25.86746 -23.84495 -23.26578 -22.52151 -22.29179 -21.74208 -19.63407 -19.06913 -18.18226 -18.02718 -17.56763 -16.95419 -16.82238 -16.19005 -15.87890 -15.56033 -15.34849 -15.20269 -15.13935 -14.87316 -14.45613 -14.33059 -14.17659 -14.04225 -14.01993 -13.81341 -13.63198 -13.22264 -13.16801 -13.01110 -12.93766 -12.57266 -12.49965 -12.33466 -12.07108 -11.89950 -11.76608 -11.67193 -11.18537 -10.96654 -10.26732 -9.87152 -9.77429 -9.10925 -8.41759 -7.96134 -6.09386 0.22131 0.33615 0.58873 0.90824 1.34597 1.39411 1.56203 2.25833 2.34283 2.48765 2.86593 2.99342 3.19543 3.32576 3.43585 3.54511 3.81787 3.93335 3.95725 4.13602 4.17081 4.19098 4.26203 4.37932 4.45411 4.58951 4.64140 4.66357 4.70775 4.72918 4.78837 4.89408 4.93945 4.95194 5.13637 5.20072 5.24068 5.24958 5.26630 5.39291 5.51286 5.59364 5.63735 5.65208 5.85998 5.88556 6.15941 6.20159 6.61574 6.93963 6.99347 7.74711 8.70576 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.038155 B = 0.001840 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.680940 B =15211.124595 C =15292.487142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.069 3.931 3 H 0.135 0.865 4 C -0.105 4.105 5 C -0.184 4.184 6 C -0.056 4.056 7 C -0.132 4.132 8 C 0.177 3.823 9 N -0.743 5.743 10 C 0.162 3.838 11 C -0.146 4.146 12 C -0.141 4.141 13 C 0.064 3.936 14 O -0.255 6.255 15 C -0.390 4.390 16 H 0.077 0.923 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.973 3.027 20 H -0.267 1.267 21 H -0.270 1.270 22 H -0.263 1.263 23 C -0.187 4.187 24 C -0.152 4.152 25 C -0.067 4.067 26 C -0.153 4.153 27 C 0.093 3.907 28 O -0.321 6.321 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.136 0.864 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.400 0.600 38 H 0.152 0.848 39 H 0.130 0.870 40 H 0.282 0.718 41 H 0.106 0.894 42 H 0.130 0.870 43 H 0.145 0.855 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.300 25.683 9.687 34.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 H 0.153 0.847 4 C -0.142 4.142 5 C -0.185 4.185 6 C -0.075 4.075 7 C -0.132 4.132 8 C 0.054 3.946 9 N -0.376 5.376 10 C 0.061 3.939 11 C -0.168 4.168 12 C -0.160 4.160 13 C 0.016 3.984 14 O -0.164 6.164 15 C -0.467 4.467 16 H 0.094 0.906 17 C -0.194 4.194 18 N -0.574 5.574 19 Si 0.795 3.205 20 H -0.192 1.192 21 H -0.195 1.195 22 H -0.187 1.187 23 C -0.207 4.207 24 C -0.175 4.175 25 C -0.085 4.085 26 C -0.171 4.171 27 C 0.048 3.952 28 O -0.236 6.236 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.153 0.847 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.234 0.766 38 H 0.169 0.831 39 H 0.147 0.853 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.148 0.852 43 H 0.163 0.837 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.453 25.491 9.754 34.106 hybrid contribution 0.789 -0.379 -0.233 0.906 sum -19.664 25.112 9.521 33.286 Atomic orbital electron populations 1.22235 0.93350 1.02576 1.04292 1.23752 0.95476 0.96947 0.82382 0.84695 1.21951 1.03580 0.89841 0.98782 1.21014 1.07199 0.96427 0.93874 1.20399 0.96593 0.89976 1.00519 1.19724 1.05106 0.94773 0.93633 1.20072 0.81886 0.92625 1.00004 1.44436 1.06289 1.16957 1.69966 1.17549 0.91725 0.87975 0.96620 1.20515 0.99608 0.92740 1.03954 1.20307 0.91550 0.99373 1.04813 1.19484 0.94232 0.86716 0.97977 1.83499 1.25166 1.33187 1.74511 1.20665 0.80173 1.07915 1.37934 0.90553 1.25271 0.97635 1.00179 0.96352 1.69761 1.13150 1.31291 1.43161 0.85183 0.78688 0.77447 0.79163 1.19226 1.19506 1.18709 1.21056 0.99289 0.95694 1.04672 1.20447 0.94620 0.97423 1.04986 1.20999 0.96224 0.96913 0.94387 1.20475 1.06630 0.89557 1.00459 1.19866 0.96571 0.85298 0.93497 1.86878 1.80232 1.16763 1.39759 0.93325 0.91188 0.88533 0.88418 0.87309 0.84661 0.90991 0.91215 0.76553 0.83081 0.85253 0.90903 0.87608 0.85187 0.83686 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.51 71.98 0.68 -0.73 16 2 C 0.07 0.74 4.32 31.18 0.13 0.88 16 3 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.10 -1.11 6.65 30.73 0.20 -0.91 16 5 C -0.18 -2.98 6.26 -19.53 -0.12 -3.11 16 6 C -0.06 -0.90 9.70 22.18 0.22 -0.69 16 7 C -0.13 -2.14 5.25 -19.83 -0.10 -2.25 16 8 C 0.18 3.05 5.04 85.63 0.43 3.48 16 9 N -0.74 -16.40 5.73 -342.96 -1.96 -18.37 16 10 C 0.16 4.89 6.66 38.22 0.25 5.14 16 11 C -0.15 -4.46 9.30 22.39 0.21 -4.26 16 12 C -0.14 -5.42 9.98 22.37 0.22 -5.19 16 13 C 0.06 3.08 6.65 22.59 0.15 3.23 16 14 O -0.25 -14.24 8.58 -23.04 -0.20 -14.44 16 15 C -0.39 -23.67 9.94 67.91 0.68 -23.00 16 16 H 0.08 4.86 5.43 -2.91 -0.02 4.84 16 17 C 0.00 0.14 5.49 84.82 0.47 0.61 16 18 N -0.93 -57.22 13.97 21.61 0.30 -56.92 16 19 Si 0.97 46.82 28.61 68.60 1.96 48.78 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 23 C -0.19 -8.46 9.16 22.37 0.20 -8.25 16 24 C -0.15 -5.40 9.89 22.39 0.22 -5.18 16 25 C -0.07 -1.06 9.68 22.21 0.21 -0.85 16 26 C -0.15 -2.63 10.06 22.45 0.23 -2.40 16 27 C 0.09 1.73 6.91 22.68 0.16 1.88 16 28 O -0.32 -5.85 10.82 -95.10 -1.03 -6.88 16 29 H 0.05 0.57 8.07 -2.39 -0.02 0.55 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 0.78 7.92 -2.39 -0.02 0.76 16 34 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.07 1.16 7.88 -2.38 -0.02 1.14 16 36 H 0.07 1.14 7.91 -2.39 -0.02 1.12 16 37 H 0.40 8.21 8.48 -92.71 -0.79 7.42 16 38 H 0.15 3.48 6.73 -2.91 -0.02 3.46 16 39 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 40 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 41 H 0.11 5.28 5.63 -2.91 -0.02 5.26 16 42 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 43 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 44 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -71.66 368.71 3.76 -67.90 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.24 Total: 21.49 kcal Atomic # 6 Polarization: -46.03 SS G_CDS: 4.45 Total: -41.58 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -1.66 Total: -75.28 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.23 Total: -21.31 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.96 Total: 48.78 kcal Total: -71.66 3.76 -67.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334315093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.707 kcal (2) G-P(sol) polarization free energy of solvation -71.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds