Wall clock time and date at job start Tue Mar 31 2020 16:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.66618 * 2 1 4 4 C 1.54698 * 110.75250 * 123.42014 * 2 1 3 5 5 C 1.51648 * 101.94695 * 143.54954 * 4 2 1 6 6 C 1.37736 * 132.17094 * 164.39298 * 5 4 2 7 7 C 1.38351 * 119.97783 * 180.90887 * 6 5 4 8 8 C 1.50702 * 120.11940 * 180.02562 * 7 6 5 9 9 N 1.46503 * 109.47395 * 89.99320 * 8 7 6 10 10 C 1.39777 * 120.00101 * 179.72758 * 9 8 7 11 11 C 1.38948 * 120.00761 * 359.97438 * 10 9 8 12 12 C 1.38010 * 119.99705 * 179.77025 * 11 10 9 13 13 C 1.38902 * 120.00225 * 0.50875 * 12 11 10 14 14 O 1.35794 * 119.99426 * 179.76774 * 13 12 11 15 15 C 1.34811 * 117.00422 * 174.43105 * 14 13 12 16 16 H 1.08000 * 119.99326 * 5.05998 * 15 14 13 17 17 C 1.38619 * 120.00417 * 185.05648 * 15 14 13 18 18 N 1.31585 * 120.00060 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00134 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47338 * 89.99783 * 19 17 15 21 21 H 1.48496 * 109.47189 * 209.99794 * 19 17 15 22 22 H 1.48499 * 109.47259 * 330.00097 * 19 17 15 23 23 C 1.38894 * 120.01084 * 359.74375 * 13 12 11 24 24 C 1.38009 * 120.01252 * 0.02562 * 23 13 12 25 25 C 1.38285 * 119.76635 * 0.26767 * 7 6 5 26 26 C 1.37940 * 120.34952 * 359.26250 * 25 7 6 27 27 C 1.38883 * 107.04271 * 344.86592 * 5 4 2 28 28 O 1.36143 * 111.21979 * 358.55889 * 27 5 4 29 29 H 1.09001 * 109.46921 * 181.76275 * 1 2 3 30 30 H 1.08996 * 109.47632 * 301.77247 * 1 2 3 31 31 H 1.09010 * 109.46917 * 61.76748 * 1 2 3 32 32 H 1.09003 * 110.93409 * 25.39083 * 4 2 1 33 33 H 1.09000 * 110.94176 * 261.71579 * 4 2 1 34 34 H 1.08001 * 120.01664 * 0.88279 * 6 5 4 35 35 H 1.09006 * 109.46869 * 329.99947 * 8 7 6 36 36 H 1.08998 * 109.47252 * 209.99538 * 8 7 6 37 37 H 0.97007 * 119.99314 * 0.02562 * 9 8 7 38 38 H 1.08007 * 119.99950 * 0.02562 * 11 10 9 39 39 H 1.07997 * 119.99935 * 180.23254 * 12 11 10 40 40 H 0.96994 * 120.00032 * 180.02562 * 18 17 15 41 41 H 1.08009 * 119.99520 * 179.97438 * 23 13 12 42 42 H 1.07999 * 120.00907 * 179.97438 * 24 23 13 43 43 H 1.07997 * 119.82618 * 179.51828 * 25 7 6 44 44 H 1.07997 * 119.88291 * 180.26083 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0781 -0.7968 1.2074 5 6 3.3053 -1.4613 0.6140 6 6 4.3939 -2.0766 1.1914 7 6 5.4000 -2.5924 0.3939 8 6 6.5922 -3.2668 1.0222 9 7 6.3184 -4.6977 1.1772 10 6 7.2858 -5.5379 1.7359 11 6 8.5073 -5.0162 2.1439 12 6 9.4604 -5.8452 2.6999 13 6 9.2027 -7.2026 2.8419 14 8 10.1424 -8.0189 3.3846 15 6 9.7881 -9.3015 3.6007 16 1 8.8240 -9.6584 3.2697 17 6 10.6611 -10.1623 4.2475 18 7 11.8356 -9.7274 4.6511 19 14 10.1703 -11.9397 4.5462 20 1 10.5975 -12.7718 3.3926 21 1 10.8274 -12.4336 5.7829 22 1 8.6959 -12.0270 4.7003 23 6 7.9837 -7.7252 2.4293 24 6 7.0284 -6.8960 1.8777 25 6 5.3101 -2.4823 -0.9817 26 6 4.2162 -1.8750 -1.5623 27 6 3.1973 -1.3566 -0.7667 28 8 2.0394 -0.7366 -1.1248 29 1 -0.3633 -1.0272 0.0316 30 1 -0.3634 0.5411 0.8736 31 1 -0.3633 0.4862 -0.9055 32 1 1.3560 -1.5412 1.5430 33 1 2.3533 -0.1280 2.0230 34 1 4.4624 -2.1562 2.2662 35 1 6.7855 -2.8259 2.0002 36 1 7.4649 -3.1310 0.3835 37 1 5.4674 -5.0627 0.8880 38 1 8.7093 -3.9614 2.0297 39 1 10.4084 -5.4391 3.0204 40 1 12.4466 -10.3298 5.1033 41 1 7.7837 -8.7809 2.5395 42 1 6.0807 -7.3024 1.5565 43 1 6.0987 -2.8777 -1.6048 44 1 4.1518 -1.7969 -2.6375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334315094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:13:19 Heat of formation + Delta-G solvation = -3.996817 kcal Electronic energy + Delta-G solvation = -25251.549437 eV Core-core repulsion = 21520.853219 eV Total energy + Delta-G solvation = -3730.696219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.50201 -39.08415 -38.31154 -36.84874 -34.36446 -33.55873 -32.12470 -31.47912 -30.80816 -30.12145 -27.74189 -26.86624 -25.61618 -24.55091 -22.55649 -22.10391 -22.08457 -21.08683 -20.55290 -17.87448 -17.79728 -17.15263 -17.06976 -16.57376 -15.91622 -15.35465 -14.94635 -14.55541 -14.40563 -14.23371 -13.85959 -13.63076 -13.54152 -13.47811 -13.35213 -13.18685 -13.16818 -12.74412 -12.61105 -12.48741 -12.37442 -11.91680 -11.55619 -11.52151 -11.42888 -11.30699 -11.07628 -10.97891 -10.89421 -10.54709 -10.33877 -9.22494 -9.18172 -9.14249 -8.42172 -8.39274 -8.14245 -6.37550 -6.30089 -3.87372 0.95637 1.04677 2.23118 2.60102 2.82957 3.19941 3.20727 3.25253 3.29736 3.98054 4.04652 4.07604 4.14665 4.43661 4.55347 4.61482 4.68976 4.72030 4.83983 4.99889 5.09433 5.16372 5.19028 5.22485 5.38077 5.44258 5.44860 5.46262 5.57216 5.62612 5.69368 5.80905 5.81237 5.95645 6.08057 6.23876 6.26870 6.30678 6.36767 6.57252 6.87301 6.89101 6.93321 7.16396 7.34568 7.47814 7.66859 8.00250 8.14283 8.27203 9.15767 9.90577 10.88537 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.032326 B = 0.001815 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.970421 B =15427.006027 C =15729.738360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.086 0.914 4 C -0.106 4.106 5 C -0.179 4.179 6 C -0.051 4.051 7 C -0.125 4.125 8 C 0.180 3.820 9 N -0.756 5.756 10 C 0.124 3.876 11 C -0.146 4.146 12 C -0.150 4.150 13 C 0.113 3.887 14 O -0.189 6.189 15 C -0.386 4.386 16 H 0.088 0.912 17 C 0.036 3.964 18 N -0.869 5.869 19 Si 0.937 3.063 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.190 4.190 24 C -0.142 4.142 25 C -0.065 4.065 26 C -0.141 4.141 27 C 0.108 3.892 28 O -0.304 6.304 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.391 0.609 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.267 0.733 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.134 0.866 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.117 19.524 -9.208 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 H 0.104 0.896 4 C -0.143 4.143 5 C -0.180 4.180 6 C -0.069 4.069 7 C -0.126 4.126 8 C 0.055 3.945 9 N -0.392 5.392 10 C 0.026 3.974 11 C -0.168 4.168 12 C -0.170 4.170 13 C 0.060 3.940 14 O -0.094 6.094 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.167 4.167 18 N -0.506 5.506 19 Si 0.763 3.237 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.209 4.209 24 C -0.164 4.164 25 C -0.084 4.084 26 C -0.159 4.159 27 C 0.062 3.938 28 O -0.218 6.218 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.145 0.855 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.225 0.775 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.077 0.923 41 H 0.145 0.855 42 H 0.123 0.877 43 H 0.152 0.848 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.698 19.645 -9.197 29.301 hybrid contribution -0.660 -1.021 0.144 1.224 sum -20.359 18.624 -9.053 29.039 Atomic orbital electron populations 1.21892 0.92049 1.03539 1.03232 1.23393 0.95802 0.95412 0.83372 0.89570 1.21864 0.94795 0.99271 0.98338 1.20735 0.97820 1.05470 0.93929 1.20255 0.91363 0.95269 1.00045 1.19836 0.97396 1.01887 0.93491 1.19903 0.93664 0.81779 0.99138 1.44245 1.17737 1.05032 1.72227 1.17395 0.89953 0.89755 1.00253 1.20173 0.93098 0.98514 1.05060 1.20023 1.00171 0.90984 1.05828 1.19242 0.89086 0.90721 0.94907 1.83984 1.34202 1.20532 1.70671 1.21230 1.03346 0.83277 1.38451 0.89471 1.25210 0.95299 0.99833 0.96377 1.70049 1.07272 1.35852 1.37408 0.85768 0.78697 0.81103 0.78152 1.20083 1.20429 1.19388 1.20991 0.94509 1.00296 1.05153 1.20234 0.99400 0.91592 1.05149 1.20861 0.96825 0.96365 0.94343 1.20255 0.92348 1.03520 0.99805 1.19578 0.86867 0.94467 0.92862 1.86854 1.34487 1.62663 1.37836 0.91391 0.90214 0.91245 0.89044 0.89053 0.85533 0.92246 0.92114 0.77532 0.87122 0.86528 0.92337 0.85528 0.87669 0.84812 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.60 37.16 0.36 -0.36 16 2 C 0.08 0.52 4.26 -25.84 -0.11 0.41 16 3 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 4 C -0.11 -0.73 6.65 -26.52 -0.18 -0.91 16 5 C -0.18 -1.71 6.27 -104.10 -0.65 -2.37 16 6 C -0.05 -0.50 9.70 -39.72 -0.39 -0.88 16 7 C -0.13 -1.27 5.25 -104.56 -0.55 -1.82 16 8 C 0.18 2.02 5.04 -5.19 -0.03 2.00 16 9 N -0.76 -10.22 5.73 -59.75 -0.34 -10.56 16 10 C 0.12 2.15 6.66 -83.71 -0.56 1.59 16 11 C -0.15 -2.64 9.30 -39.40 -0.37 -3.01 16 12 C -0.15 -3.22 9.98 -39.42 -0.39 -3.62 16 13 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 14 O -0.19 -5.52 9.76 -0.03 0.00 -5.52 16 15 C -0.39 -11.06 9.48 30.87 0.29 -10.77 16 16 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 17 C 0.04 1.00 5.49 -17.52 -0.10 0.91 16 18 N -0.87 -26.13 13.67 55.48 0.76 -25.37 16 19 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 23 C -0.19 -4.20 9.16 -39.42 -0.36 -4.56 16 24 C -0.14 -2.64 9.89 -39.40 -0.39 -3.03 16 25 C -0.07 -0.62 9.68 -39.67 -0.38 -1.01 16 26 C -0.14 -1.37 10.06 -39.30 -0.40 -1.76 16 27 C 0.11 1.12 7.03 -38.96 -0.27 0.85 16 28 O -0.30 -3.08 10.81 -20.20 -0.22 -3.30 16 29 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.09 0.58 7.90 -51.93 -0.41 0.17 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.06 0.67 7.91 -51.93 -0.41 0.26 16 36 H 0.06 0.68 7.88 -51.93 -0.41 0.27 16 37 H 0.39 4.90 8.48 -40.82 -0.35 4.55 16 38 H 0.11 1.69 6.73 -52.48 -0.35 1.34 16 39 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.13 2.81 5.63 -52.48 -0.30 2.52 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 44 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 369.99 15.07 5.58 5.58 Total: -1.00 -32.66 369.99 -9.84 -42.50 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.86 Total: 6.45 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -4.73 Total: -25.82 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.42 Total: -35.93 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.22 Total: -8.82 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.66 -9.84 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334315094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.499 kcal (2) G-P(sol) polarization free energy of solvation -32.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds