Wall clock time and date at job start Tue Mar 31 2020 16:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47261 * 2 1 4 4 O 1.42899 * 109.47256 * 119.99899 * 2 1 3 5 5 C 1.50701 * 109.47140 * 240.00434 * 2 1 3 6 6 C 1.38228 * 120.00380 * 99.99778 * 5 2 1 7 7 C 1.38236 * 120.00177 * 180.02562 * 6 5 2 8 8 C 1.38229 * 120.00070 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00239 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46968 * 89.99489 * 9 8 7 11 11 C 1.34776 * 119.99826 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00169 * 0.02562 * 11 10 9 13 13 C 1.47435 * 120.00250 * 180.02562 * 11 10 9 14 14 C 1.39225 * 120.27795 * 354.02297 * 13 11 10 15 15 C 1.38226 * 120.08750 * 179.97438 * 14 13 11 16 16 C 1.38827 * 120.67626 * 0.02562 * 15 14 13 17 17 C 1.37595 * 120.56907 * 359.97438 * 16 15 14 18 18 C 1.40698 * 119.88478 * 359.97438 * 17 16 15 19 19 C 1.40887 * 120.32767 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00138 * 143.94320 * 19 18 17 21 21 C 1.40268 * 120.00346 * 323.94150 * 19 18 17 22 22 N 1.30635 * 119.99639 * 350.12171 * 21 19 18 23 23 Si 1.86800 * 120.00532 * 170.12104 * 21 19 18 24 24 H 1.48501 * 109.47358 * 89.99935 * 23 21 19 25 25 H 1.48496 * 109.47220 * 209.99952 * 23 21 19 26 26 H 1.48500 * 109.46981 * 330.00328 * 23 21 19 27 27 C 1.38244 * 119.99815 * 0.24860 * 8 7 6 28 28 C 1.38231 * 119.99785 * 359.49718 * 27 8 7 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47243 * 299.99760 * 1 2 3 31 31 H 1.09000 * 109.47070 * 59.99918 * 1 2 3 32 32 H 0.96701 * 113.99568 * 60.00382 * 4 2 1 33 33 H 1.08003 * 119.99965 * 0.02562 * 6 5 2 34 34 H 1.08005 * 119.99987 * 179.97438 * 7 6 5 35 35 H 1.08995 * 109.46747 * 330.00008 * 9 8 7 36 36 H 1.08997 * 109.46943 * 209.99709 * 9 8 7 37 37 H 0.97000 * 120.00172 * 0.02562 * 10 9 8 38 38 H 1.07993 * 119.95486 * 0.25452 * 14 13 11 39 39 H 1.08003 * 119.65865 * 179.97438 * 15 14 13 40 40 H 1.08000 * 119.70797 * 179.97438 * 16 15 14 41 41 H 1.08001 * 120.05193 * 180.02562 * 17 16 15 42 42 H 0.97000 * 120.00129 * 179.97438 * 22 21 19 43 43 H 1.07999 * 119.99615 * 179.73021 * 27 8 7 44 44 H 1.07996 * 119.99656 * 180.23357 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0323 -0.7103 -1.2305 6 6 2.4587 0.0195 -2.3243 7 6 2.9189 -0.6321 -3.4532 8 6 2.9524 -2.0136 -3.4885 9 6 3.4536 -2.7240 -4.7195 10 7 4.8988 -2.9361 -4.6064 11 6 5.5681 -3.5580 -5.5972 12 8 4.9726 -3.9426 -6.5852 13 6 7.0224 -3.7720 -5.4832 14 6 7.7307 -3.2266 -4.4159 15 6 9.0940 -3.4302 -4.3126 16 6 9.7729 -4.1766 -5.2662 17 6 9.1001 -4.7281 -6.3322 18 6 7.7121 -4.5368 -6.4601 19 6 7.0140 -5.0968 -7.5482 20 1 6.0114 -5.4737 -7.4102 21 6 7.6211 -5.1649 -8.8109 22 7 8.7483 -4.5414 -9.0281 23 14 6.8180 -6.1473 -10.1818 24 1 5.8975 -5.2683 -10.9469 25 1 7.8661 -6.6770 -11.0907 26 1 6.0519 -7.2774 -9.5977 27 6 2.5207 -2.7435 -2.3968 28 6 2.0653 -2.0919 -1.2660 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7210 -1.5952 1.2328 33 1 2.4322 1.0988 -2.2969 34 1 3.2517 -0.0619 -4.3080 35 1 3.2433 -2.1171 -5.6001 36 1 2.9513 -3.6867 -4.8132 37 1 5.3738 -2.6297 -3.8181 38 1 7.2135 -2.6476 -3.6652 39 1 9.6366 -3.0036 -3.4820 40 1 10.8383 -4.3254 -5.1704 41 1 9.6365 -5.3076 -7.0690 42 1 9.1684 -4.5887 -9.9011 43 1 2.5427 -3.8229 -2.4261 44 1 1.7316 -2.6621 -0.4117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001445121513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:45 Heat of formation + Delta-G solvation = -50.269013 kcal Electronic energy + Delta-G solvation = -26006.221392 eV Core-core repulsion = 22273.518661 eV Total energy + Delta-G solvation = -3732.702732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.07272 -38.87604 -37.49265 -36.69297 -34.37668 -33.61110 -32.15514 -31.10248 -30.35824 -29.81526 -29.19458 -26.25233 -25.19573 -23.41200 -22.78814 -21.99872 -20.97656 -20.64091 -19.40419 -17.86134 -17.50466 -16.53386 -16.24065 -15.49658 -15.32593 -15.23610 -14.96796 -14.74930 -14.24252 -13.94714 -13.91518 -13.65759 -13.56868 -13.41245 -13.12193 -12.69272 -12.44177 -12.41831 -12.20111 -12.07654 -11.66616 -11.55285 -11.35168 -11.11818 -11.09769 -10.96909 -10.69797 -10.52393 -10.44399 -10.09178 -9.66779 -9.24222 -9.10111 -8.95023 -8.40947 -8.33897 -7.58642 -7.33452 -6.78276 -4.36873 1.03841 1.22873 2.36233 2.82034 3.10995 3.18217 3.24043 3.42598 3.99297 4.06528 4.16423 4.20764 4.29577 4.56050 4.69555 4.72710 4.73736 4.84505 4.86865 5.22034 5.24661 5.34865 5.55919 5.60656 5.64788 5.67089 5.71712 5.90163 5.93664 5.99810 6.17497 6.20854 6.30049 6.32379 6.52265 6.61662 6.78632 6.94678 7.07626 7.14501 7.23073 7.23848 7.45997 7.62323 7.87907 7.98495 8.17830 8.38151 8.67118 8.82306 8.90607 9.39738 10.18384 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.002582 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.034218 B =10841.628851 C =11844.192817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.143 3.857 3 H 0.106 0.894 4 O -0.558 6.558 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.098 4.098 8 C -0.095 4.095 9 C 0.164 3.836 10 N -0.745 5.745 11 C 0.565 3.435 12 O -0.537 6.537 13 C -0.259 4.259 14 C -0.057 4.057 15 C -0.244 4.244 16 C -0.095 4.095 17 C -0.147 4.147 18 C 0.148 3.852 19 C -0.417 4.417 20 H 0.103 0.897 21 C 0.070 3.930 22 N -0.795 5.795 23 Si 0.917 3.083 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.260 1.260 27 C -0.097 4.097 28 C -0.116 4.116 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.374 0.626 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.393 0.607 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.282 0.718 43 H 0.126 0.874 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 6.641 13.474 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.084 3.916 3 H 0.124 0.876 4 O -0.364 6.364 5 C -0.118 4.118 6 C -0.131 4.131 7 C -0.117 4.117 8 C -0.096 4.096 9 C 0.040 3.960 10 N -0.400 5.400 11 C 0.358 3.642 12 O -0.415 6.415 13 C -0.264 4.264 14 C -0.076 4.076 15 C -0.264 4.264 16 C -0.114 4.114 17 C -0.166 4.166 18 C 0.144 3.856 19 C -0.445 4.445 20 H 0.120 0.880 21 C -0.148 4.148 22 N -0.420 5.420 23 Si 0.741 3.259 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.184 1.184 27 C -0.116 4.116 28 C -0.134 4.134 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.222 0.778 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.227 0.773 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.092 0.908 43 H 0.144 0.856 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.494 6.975 12.642 19.094 hybrid contribution -0.238 -0.551 -0.447 0.748 sum -12.732 6.425 12.195 18.765 Atomic orbital electron populations 1.22490 0.95453 1.02912 1.02916 1.20809 0.92963 0.95987 0.81793 0.87614 1.86629 1.77345 1.29197 1.43182 1.20543 1.00306 0.94410 0.96557 1.20949 0.99347 0.99726 0.93071 1.21147 0.98324 0.93930 0.98258 1.20082 0.99574 0.93882 0.96014 1.20013 0.82595 0.99387 0.93997 1.46086 1.07018 1.63702 1.23205 1.18449 0.87733 0.76432 0.81536 1.90686 1.69831 1.50743 1.30236 1.19464 0.91598 1.11779 1.03564 1.20660 0.94230 0.97183 0.95518 1.20293 0.94206 1.09738 1.02134 1.20800 0.97637 0.97803 0.95159 1.21303 0.95003 1.02940 0.97355 1.17472 0.91288 0.86564 0.90326 1.20061 1.01880 1.30481 0.92118 0.87967 1.26087 0.94073 0.93923 1.00718 1.69716 1.15577 1.32418 1.24284 0.86167 0.79448 0.80529 0.79743 1.19347 1.20344 1.18353 1.21100 0.97740 1.00172 0.92566 1.20794 1.00813 0.93621 0.98141 0.92090 0.91490 0.91274 0.77785 0.85894 0.85547 0.91286 0.91290 0.77258 0.89281 0.89077 0.89050 0.86760 0.90753 0.85589 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 9.51 37.16 0.35 -0.75 16 2 C 0.14 1.11 3.83 -27.88 -0.11 1.01 16 3 H 0.11 0.78 8.00 -51.93 -0.42 0.37 16 4 O -0.56 -4.87 13.19 -35.23 -0.46 -5.34 16 5 C -0.12 -1.09 4.97 -104.62 -0.52 -1.61 16 6 C -0.11 -1.10 9.67 -39.59 -0.38 -1.48 16 7 C -0.10 -1.10 9.70 -39.59 -0.38 -1.48 16 8 C -0.10 -1.16 5.25 -104.62 -0.55 -1.71 16 9 C 0.16 2.47 5.80 -5.19 -0.03 2.44 16 10 N -0.74 -13.22 5.50 -62.56 -0.34 -13.57 16 11 C 0.56 13.04 7.72 -12.52 -0.10 12.94 16 12 O -0.54 -14.08 13.64 5.27 0.07 -14.01 16 13 C -0.26 -6.34 5.92 -104.37 -0.62 -6.96 16 14 C -0.06 -1.23 9.52 -39.22 -0.37 -1.60 16 15 C -0.24 -5.23 10.03 -39.37 -0.39 -5.62 16 16 C -0.10 -2.15 10.01 -39.60 -0.40 -2.55 16 17 C -0.15 -3.73 8.62 -38.89 -0.34 -4.07 16 18 C 0.15 3.97 5.47 -106.55 -0.58 3.39 16 19 C -0.42 -11.48 7.59 -37.82 -0.29 -11.77 16 20 H 0.10 2.91 6.05 -52.49 -0.32 2.59 16 21 C 0.07 1.81 5.23 -17.30 -0.09 1.72 16 22 N -0.79 -20.78 11.32 55.56 0.63 -20.15 16 23 Si 0.92 19.78 29.57 -169.99 -5.03 14.75 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 27 C -0.10 -1.06 9.70 -39.58 -0.38 -1.45 16 28 C -0.12 -1.08 9.32 -39.58 -0.37 -1.45 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.37 2.06 7.51 45.56 0.34 2.41 16 33 H 0.12 0.94 8.04 -52.48 -0.42 0.52 16 34 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 35 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 37 H 0.39 6.28 6.53 -40.82 -0.27 6.02 16 38 H 0.09 1.61 6.44 -52.49 -0.34 1.27 16 39 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.11 2.96 6.77 -52.49 -0.36 2.60 16 42 H 0.28 6.70 8.29 -40.82 -0.34 6.36 16 43 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.12 0.80 6.79 -52.49 -0.36 0.45 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -31.30 369.64 -10.17 -41.47 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.06 Total: 12.27 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -5.55 Total: -21.00 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.29 Total: -33.72 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.39 Total: -19.34 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.30 -10.17 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001445121513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.799 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds