Wall clock time and date at job start Tue Mar 31 2020 16:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47261 * 2 1 4 4 O 1.42899 * 109.47256 * 119.99899 * 2 1 3 5 5 C 1.50701 * 109.47140 * 240.00434 * 2 1 3 6 6 C 1.38228 * 120.00380 * 99.99778 * 5 2 1 7 7 C 1.38236 * 120.00177 * 180.02562 * 6 5 2 8 8 C 1.38229 * 120.00070 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00239 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46968 * 89.99489 * 9 8 7 11 11 C 1.34776 * 119.99826 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00169 * 0.02562 * 11 10 9 13 13 C 1.47435 * 120.00250 * 180.02562 * 11 10 9 14 14 C 1.39225 * 120.27795 * 354.02297 * 13 11 10 15 15 C 1.38226 * 120.08750 * 179.97438 * 14 13 11 16 16 C 1.38827 * 120.67626 * 0.02562 * 15 14 13 17 17 C 1.37595 * 120.56907 * 359.97438 * 16 15 14 18 18 C 1.40698 * 119.88478 * 359.97438 * 17 16 15 19 19 C 1.40887 * 120.32767 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00138 * 143.94320 * 19 18 17 21 21 C 1.40268 * 120.00346 * 323.94150 * 19 18 17 22 22 N 1.30635 * 119.99639 * 350.12171 * 21 19 18 23 23 Si 1.86800 * 120.00532 * 170.12104 * 21 19 18 24 24 H 1.48501 * 109.47358 * 89.99935 * 23 21 19 25 25 H 1.48496 * 109.47220 * 209.99952 * 23 21 19 26 26 H 1.48500 * 109.46981 * 330.00328 * 23 21 19 27 27 C 1.38244 * 119.99815 * 0.24860 * 8 7 6 28 28 C 1.38231 * 119.99785 * 359.49718 * 27 8 7 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47243 * 299.99760 * 1 2 3 31 31 H 1.09000 * 109.47070 * 59.99918 * 1 2 3 32 32 H 0.96701 * 113.99568 * 60.00382 * 4 2 1 33 33 H 1.08003 * 119.99965 * 0.02562 * 6 5 2 34 34 H 1.08005 * 119.99987 * 179.97438 * 7 6 5 35 35 H 1.08995 * 109.46747 * 330.00008 * 9 8 7 36 36 H 1.08997 * 109.46943 * 209.99709 * 9 8 7 37 37 H 0.97000 * 120.00172 * 0.02562 * 10 9 8 38 38 H 1.07993 * 119.95486 * 0.25452 * 14 13 11 39 39 H 1.08003 * 119.65865 * 179.97438 * 15 14 13 40 40 H 1.08000 * 119.70797 * 179.97438 * 16 15 14 41 41 H 1.08001 * 120.05193 * 180.02562 * 17 16 15 42 42 H 0.97000 * 120.00129 * 179.97438 * 22 21 19 43 43 H 1.07999 * 119.99615 * 179.73021 * 27 8 7 44 44 H 1.07996 * 119.99656 * 180.23357 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0323 -0.7103 -1.2305 6 6 2.4587 0.0195 -2.3243 7 6 2.9189 -0.6321 -3.4532 8 6 2.9524 -2.0136 -3.4885 9 6 3.4536 -2.7240 -4.7195 10 7 4.8988 -2.9361 -4.6064 11 6 5.5681 -3.5580 -5.5972 12 8 4.9726 -3.9426 -6.5852 13 6 7.0224 -3.7720 -5.4832 14 6 7.7307 -3.2266 -4.4159 15 6 9.0940 -3.4302 -4.3126 16 6 9.7729 -4.1766 -5.2662 17 6 9.1001 -4.7281 -6.3322 18 6 7.7121 -4.5368 -6.4601 19 6 7.0140 -5.0968 -7.5482 20 1 6.0114 -5.4737 -7.4102 21 6 7.6211 -5.1649 -8.8109 22 7 8.7483 -4.5414 -9.0281 23 14 6.8180 -6.1473 -10.1818 24 1 5.8975 -5.2683 -10.9469 25 1 7.8661 -6.6770 -11.0907 26 1 6.0519 -7.2774 -9.5977 27 6 2.5207 -2.7435 -2.3968 28 6 2.0653 -2.0919 -1.2660 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7210 -1.5952 1.2328 33 1 2.4322 1.0988 -2.2969 34 1 3.2517 -0.0619 -4.3080 35 1 3.2433 -2.1171 -5.6001 36 1 2.9513 -3.6867 -4.8132 37 1 5.3738 -2.6297 -3.8181 38 1 7.2135 -2.6476 -3.6652 39 1 9.6366 -3.0036 -3.4820 40 1 10.8383 -4.3254 -5.1704 41 1 9.6365 -5.3076 -7.0690 42 1 9.1684 -4.5887 -9.9011 43 1 2.5427 -3.8229 -2.4261 44 1 1.7316 -2.6621 -0.4117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001445121513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:44 Heat of formation + Delta-G solvation = -69.719802 kcal Electronic energy + Delta-G solvation = -26007.064842 eV Core-core repulsion = 22273.518661 eV Total energy + Delta-G solvation = -3733.546181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.03272 -40.43846 -38.69010 -38.04053 -35.90392 -35.35163 -33.15669 -31.94579 -31.81764 -31.48002 -30.39439 -27.63160 -26.78790 -24.33989 -23.78499 -23.40346 -22.64837 -21.61509 -21.11027 -19.42362 -18.54579 -18.08025 -17.15845 -17.01050 -16.84290 -16.23172 -16.01300 -15.87850 -15.83178 -15.39804 -15.13556 -14.95681 -14.50923 -14.48803 -14.35522 -14.17591 -13.86911 -13.70344 -13.33437 -13.13962 -12.89791 -12.86762 -12.80576 -12.55323 -12.49048 -12.30316 -12.05151 -11.91835 -11.79165 -11.48041 -11.13554 -11.08606 -10.39145 -9.99773 -9.87678 -9.62216 -9.40289 -9.21542 -8.67372 -6.35559 0.19974 0.44271 0.51122 1.00701 1.33268 1.46364 1.49221 2.21191 2.34101 2.40260 2.78955 2.91571 3.53272 3.59970 3.70615 3.77949 3.84553 4.05960 4.17937 4.26982 4.31266 4.36265 4.43402 4.49673 4.56989 4.69564 4.70142 4.83994 4.92878 4.97749 4.99607 5.08233 5.12960 5.23601 5.24808 5.33740 5.39982 5.58884 5.59598 5.62238 5.64037 5.81383 5.99606 6.04104 6.09780 6.33579 6.62928 6.78122 6.79432 6.90784 6.99972 7.63754 8.31549 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.002582 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.034218 B =10841.628851 C =11844.192817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.145 3.855 3 H 0.110 0.890 4 O -0.573 6.573 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.107 4.107 8 C -0.109 4.109 9 C 0.167 3.833 10 N -0.724 5.724 11 C 0.560 3.440 12 O -0.577 6.577 13 C -0.277 4.277 14 C -0.055 4.055 15 C -0.235 4.235 16 C -0.091 4.091 17 C -0.175 4.175 18 C 0.116 3.884 19 C -0.456 4.456 20 H 0.079 0.921 21 C 0.031 3.969 22 N -0.825 5.825 23 Si 0.979 3.021 24 H -0.271 1.271 25 H -0.257 1.257 26 H -0.263 1.263 27 C -0.104 4.104 28 C -0.115 4.115 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.387 0.613 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.404 0.596 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.289 0.711 43 H 0.129 0.871 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.934 7.989 16.177 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.086 3.914 3 H 0.128 0.872 4 O -0.381 6.381 5 C -0.114 4.114 6 C -0.133 4.133 7 C -0.125 4.125 8 C -0.109 4.109 9 C 0.044 3.956 10 N -0.378 5.378 11 C 0.353 3.647 12 O -0.459 6.459 13 C -0.282 4.282 14 C -0.073 4.073 15 C -0.254 4.254 16 C -0.110 4.110 17 C -0.194 4.194 18 C 0.112 3.888 19 C -0.486 4.486 20 H 0.097 0.903 21 C -0.183 4.183 22 N -0.452 5.452 23 Si 0.800 3.200 24 H -0.197 1.197 25 H -0.181 1.181 26 H -0.187 1.187 27 C -0.123 4.123 28 C -0.133 4.133 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.237 0.763 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.241 0.759 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.139 0.861 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.147 0.853 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.941 8.339 15.399 21.775 hybrid contribution -0.123 -0.838 -1.015 1.322 sum -13.064 7.501 14.385 20.829 Atomic orbital electron populations 1.22446 0.94147 1.03389 1.03344 1.20858 0.93879 0.95861 0.80754 0.87228 1.86608 1.77746 1.30410 1.43379 1.20834 0.99111 0.94542 0.96929 1.21206 0.98635 1.00945 0.92536 1.21222 0.98768 0.93510 0.99016 1.19807 1.01575 0.94289 0.95266 1.20040 0.80690 0.99327 0.95561 1.45853 1.08216 1.61683 1.22006 1.18462 0.87670 0.76638 0.81957 1.90660 1.70520 1.52550 1.32147 1.19845 0.92745 1.11627 1.04016 1.21049 0.94656 0.96477 0.95135 1.20807 0.94281 1.07952 1.02340 1.21183 0.99206 0.96553 0.94050 1.21250 0.94785 1.04681 0.98695 1.17864 0.92405 0.87394 0.91135 1.20012 1.01409 1.33342 0.93787 0.90294 1.26773 0.94682 0.94558 1.02310 1.69740 1.16686 1.33578 1.25198 0.85264 0.78814 0.78859 0.77067 1.19669 1.18076 1.18675 1.21205 0.97897 1.00451 0.92743 1.21090 0.99893 0.93992 0.98319 0.91625 0.90882 0.91042 0.76303 0.83797 0.85547 0.92272 0.91996 0.75936 0.85381 0.84967 0.86088 0.88437 0.90062 0.85313 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.51 71.98 0.68 -0.96 16 2 C 0.15 1.82 3.83 29.85 0.11 1.93 16 3 H 0.11 1.29 8.00 -2.39 -0.02 1.27 16 4 O -0.57 -8.27 13.19 -148.98 -1.97 -10.24 16 5 C -0.11 -1.78 4.97 -19.87 -0.10 -1.88 16 6 C -0.12 -1.96 9.67 22.27 0.22 -1.75 16 7 C -0.11 -2.23 9.70 22.27 0.22 -2.02 16 8 C -0.11 -2.56 5.25 -19.86 -0.10 -2.66 16 9 C 0.17 5.09 5.80 85.63 0.50 5.59 16 10 N -0.72 -25.58 5.50 -470.10 -2.58 -28.16 16 11 C 0.56 26.53 7.72 86.67 0.67 27.20 16 12 O -0.58 -31.89 13.64 -4.06 -0.06 -31.94 16 13 C -0.28 -13.76 5.92 -19.70 -0.12 -13.87 16 14 C -0.05 -2.23 9.52 22.50 0.21 -2.01 16 15 C -0.23 -9.29 10.03 22.41 0.22 -9.06 16 16 C -0.09 -3.99 10.01 22.26 0.22 -3.77 16 17 C -0.17 -9.10 8.62 22.72 0.20 -8.91 16 18 C 0.12 6.47 5.47 -21.11 -0.12 6.35 16 19 C -0.46 -26.64 7.59 23.41 0.18 -26.46 16 20 H 0.08 4.84 6.05 -2.91 -0.02 4.82 16 21 C 0.03 1.69 5.23 85.36 0.45 2.14 16 22 N -0.83 -44.91 11.32 21.88 0.25 -44.66 16 23 Si 0.98 42.31 29.57 68.60 2.03 44.34 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 25 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 26 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 27 C -0.10 -2.11 9.70 22.27 0.22 -1.89 16 28 C -0.12 -1.84 9.32 22.27 0.21 -1.63 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.39 3.02 7.51 -74.06 -0.56 2.47 16 33 H 0.14 1.78 8.04 -2.91 -0.02 1.76 16 34 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.06 1.92 8.09 -2.39 -0.02 1.90 16 36 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 37 H 0.40 12.28 6.53 -92.71 -0.61 11.68 16 38 H 0.13 4.15 6.44 -2.91 -0.02 4.13 16 39 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 40 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.10 5.29 6.77 -2.91 -0.02 5.27 16 42 H 0.29 14.18 8.29 -92.71 -0.77 13.41 16 43 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 44 H 0.15 1.46 6.79 -2.91 -0.02 1.44 16 Total: -1.00 -71.26 369.64 1.42 -69.84 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -0.12 Total: 34.49 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 3.87 Total: -33.66 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -2.34 Total: -72.82 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -2.02 Total: -42.18 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -71.26 1.42 -69.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001445121513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.121 kcal (2) G-P(sol) polarization free energy of solvation -71.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds