Wall clock time and date at job start Tue Mar 31 2020 16:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47599 * 2 1 4 4 N 1.46506 * 109.47085 * 239.99707 * 2 1 3 5 5 C 1.34775 * 119.99496 * 84.72673 * 4 2 1 6 6 O 1.21280 * 120.00621 * 0.27243 * 5 4 2 7 7 C 1.50704 * 119.99701 * 180.28044 * 5 4 2 8 8 H 1.09006 * 109.46638 * 299.99749 * 7 5 4 9 9 C 1.50701 * 109.47533 * 59.99563 * 7 5 4 10 10 H 1.08000 * 119.99474 * 33.92868 * 9 7 5 11 11 C 1.37871 * 120.00147 * 213.93192 * 9 7 5 12 12 N 1.31512 * 120.00138 * 6.38670 * 11 9 7 13 13 Si 1.86799 * 120.00147 * 186.39108 * 11 9 7 14 14 H 1.48506 * 109.47255 * 89.99547 * 13 11 9 15 15 H 1.48497 * 109.47228 * 209.99798 * 13 11 9 16 16 H 1.48505 * 109.46849 * 329.99976 * 13 11 9 17 17 C 1.50698 * 109.47144 * 180.02562 * 7 5 4 18 18 C 1.38233 * 119.99935 * 293.84237 * 17 7 5 19 19 C 1.38231 * 120.00087 * 179.78870 * 18 17 7 20 20 C 1.38245 * 119.99772 * 0.44267 * 19 18 17 21 21 C 1.38222 * 119.99865 * 359.80968 * 20 19 18 22 22 C 1.38233 * 120.00683 * 359.97438 * 21 20 19 23 23 C 1.50707 * 109.47081 * 120.00061 * 2 1 3 24 24 C 1.38287 * 119.96982 * 80.00035 * 23 2 1 25 25 C 1.38241 * 120.10848 * 179.97438 * 24 23 2 26 26 C 1.38169 * 120.05673 * 359.97438 * 25 24 23 27 27 C 1.38712 * 119.94494 * 0.03234 * 26 25 24 28 28 O 1.35895 * 120.05497 * 180.02562 * 27 26 25 29 29 C 1.38115 * 119.97196 * 259.72206 * 23 2 1 30 30 H 1.09003 * 109.46954 * 59.99828 * 1 2 3 31 31 H 1.08993 * 109.47260 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47057 * 300.00002 * 1 2 3 33 33 H 0.96998 * 119.99761 * 265.00338 * 4 2 1 34 34 H 0.97006 * 120.00345 * 180.02562 * 12 11 9 35 35 H 1.07995 * 120.00018 * 359.97438 * 18 17 7 36 36 H 1.08001 * 120.00390 * 180.27944 * 19 18 17 37 37 H 1.08004 * 119.99574 * 179.83819 * 20 19 18 38 38 H 1.08006 * 120.00127 * 179.97438 * 21 20 19 39 39 H 1.07992 * 120.00502 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.94795 * 359.97272 * 24 23 2 41 41 H 1.08003 * 119.97301 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.02843 * 180.02562 * 26 25 24 43 43 H 0.96691 * 114.00528 * 89.99620 * 28 27 26 44 44 H 1.08002 * 120.03052 * 359.97438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1418 -0.0197 -2.3585 6 8 1.8533 1.1571 -2.4130 7 6 2.6381 -0.7317 -3.5905 8 1 3.6382 -1.1239 -3.4053 9 6 1.7064 -1.8684 -3.9235 10 1 0.6482 -1.7736 -3.7298 11 6 2.2050 -3.0293 -4.4753 12 7 3.5041 -3.1954 -4.5952 13 14 1.0353 -4.3664 -5.0528 14 1 0.6829 -4.1348 -6.4767 15 1 1.6912 -5.6915 -4.9144 16 1 -0.1981 -4.3358 -4.2264 17 6 2.6843 0.2355 -4.7453 18 6 1.5119 0.7673 -5.2487 19 6 1.5545 1.6578 -6.3051 20 6 2.7690 2.0094 -6.8641 21 6 3.9409 1.4736 -6.3641 22 6 3.8987 0.5865 -5.3047 23 6 2.0323 -0.7105 1.2305 24 6 2.0665 -2.0925 1.2647 25 6 2.5272 -2.7471 2.3918 26 6 2.9554 -2.0216 3.4869 27 6 2.9220 -0.6353 3.4552 28 8 3.3430 0.0805 4.5309 29 6 2.4636 0.0194 2.3209 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6319 -1.1526 34 1 3.8549 -4.0120 -4.9839 35 1 0.5628 0.4894 -4.8147 36 1 0.6388 2.0768 -6.6955 37 1 2.8021 2.7032 -7.6912 38 1 4.8898 1.7479 -6.8010 39 1 4.8143 0.1676 -4.9144 40 1 1.7326 -2.6614 0.4095 41 1 2.5533 -3.8266 2.4159 42 1 3.3156 -2.5335 4.3671 43 1 4.2845 0.2998 4.5133 44 1 2.4413 1.0988 2.2919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001448622389.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:47 Heat of formation + Delta-G solvation = -40.117744 kcal Electronic energy + Delta-G solvation = -26913.655288 eV Core-core repulsion = 23181.392748 eV Total energy + Delta-G solvation = -3732.262539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.07783 -39.10156 -37.91680 -36.94225 -34.69507 -33.66489 -31.42107 -31.02383 -29.94930 -29.82064 -28.95792 -27.22969 -24.22033 -23.56441 -22.74554 -21.63133 -21.35545 -20.32371 -19.26566 -18.15957 -16.88518 -16.55916 -16.12982 -16.01110 -15.64717 -15.19487 -14.88183 -14.56225 -14.15313 -14.06177 -14.01155 -13.64911 -13.35599 -12.98183 -12.71727 -12.48895 -12.33534 -12.22358 -12.06263 -11.82402 -11.68905 -11.52230 -11.42926 -11.10040 -11.07124 -11.00839 -10.44873 -10.41078 -10.28411 -10.00446 -9.46274 -8.96344 -8.81084 -8.69293 -8.55397 -8.37022 -7.95901 -7.62721 -6.30378 -4.35509 1.17711 1.25692 2.36187 2.39248 3.18276 3.26112 3.27301 3.50896 3.70067 4.01039 4.15726 4.26559 4.68552 4.81738 4.85189 5.06552 5.07459 5.26395 5.41103 5.47245 5.58481 5.71098 5.75266 5.78263 5.84660 5.88432 5.94032 6.08777 6.20108 6.30345 6.31092 6.36414 6.45395 6.47814 6.56887 6.59739 6.74128 6.86158 6.96345 7.15608 7.23408 7.35825 7.43515 7.51953 7.60625 7.74408 7.94315 8.05854 8.36722 8.69008 9.22632 9.30868 10.78255 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.003832 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.677833 B = 7305.948780 C = 8676.038205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.181 3.819 3 H 0.090 0.910 4 N -0.724 5.724 5 C 0.530 3.470 6 O -0.567 6.567 7 C 0.048 3.952 8 H 0.092 0.908 9 C -0.514 4.514 10 H 0.062 0.938 11 C 0.076 3.924 12 N -0.879 5.879 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.271 1.271 17 C -0.011 4.011 18 C -0.084 4.084 19 C -0.135 4.135 20 C -0.149 4.149 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.065 4.065 24 C -0.117 4.117 25 C -0.099 4.099 26 C -0.150 4.150 27 C 0.102 3.898 28 O -0.501 6.501 29 C -0.136 4.136 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.405 0.595 34 H 0.267 0.733 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.389 0.611 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 2.317 10.732 10.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 H 0.108 0.892 4 N -0.377 5.377 5 C 0.320 3.680 6 O -0.446 6.446 7 C 0.027 3.973 8 H 0.109 0.891 9 C -0.552 4.552 10 H 0.081 0.919 11 C -0.129 4.129 12 N -0.515 5.515 13 Si 0.723 3.277 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.012 4.012 18 C -0.102 4.102 19 C -0.153 4.153 20 C -0.167 4.167 21 C -0.150 4.150 22 C -0.139 4.139 23 C -0.066 4.066 24 C -0.136 4.136 25 C -0.118 4.118 26 C -0.169 4.169 27 C 0.057 3.943 28 O -0.311 6.311 29 C -0.155 4.155 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.241 0.759 34 H 0.077 0.923 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.244 0.756 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.208 2.977 10.799 11.204 hybrid contribution 0.047 -1.265 -0.531 1.373 sum -0.161 1.713 10.268 10.412 Atomic orbital electron populations 1.22147 0.94637 1.02369 1.02227 1.19661 0.94038 0.96597 0.82133 0.89164 1.46084 1.68622 1.14498 1.08523 1.21626 0.75248 0.86364 0.84748 1.90578 1.51576 1.16913 1.85532 1.18137 1.01069 0.92120 0.85932 0.89055 1.20672 0.93482 0.97372 1.43674 0.91930 1.24944 0.95160 0.98121 0.94685 1.69879 1.11329 1.27312 1.42962 0.86523 0.80924 0.80604 0.79655 1.20309 1.21059 1.19614 1.20054 0.91985 0.92588 0.96589 1.20824 0.98379 0.95717 0.95328 1.20964 0.96978 0.99513 0.97815 1.20801 0.93053 1.01933 1.00903 1.20900 0.97310 0.98916 0.97881 1.21003 0.97728 0.97927 0.97206 1.19949 0.97604 0.93869 0.95160 1.21119 0.99844 0.93926 0.98684 1.21035 0.97954 1.00060 0.92712 1.21393 1.02843 0.93316 0.99308 1.18402 0.99548 0.89709 0.86599 1.84810 1.30414 1.74231 1.41679 1.21264 1.01377 1.00530 0.92290 0.91393 0.92272 0.92328 0.75877 0.92309 0.87093 0.87589 0.87711 0.87560 0.87007 0.85123 0.85429 0.85673 0.75563 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.46 37.16 0.35 -1.91 16 2 C 0.18 2.80 2.78 -69.08 -0.19 2.61 16 3 H 0.09 1.49 7.44 -51.93 -0.39 1.11 16 4 N -0.72 -13.07 4.93 -54.92 -0.27 -13.34 16 5 C 0.53 11.50 7.00 -10.98 -0.08 11.42 16 6 O -0.57 -13.41 15.09 5.56 0.08 -13.33 16 7 C 0.05 1.13 2.44 -94.07 -0.23 0.90 16 8 H 0.09 2.27 7.00 -51.93 -0.36 1.91 16 9 C -0.51 -12.55 7.46 -34.44 -0.26 -12.81 16 10 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 11 C 0.08 1.88 5.45 -17.82 -0.10 1.78 16 12 N -0.88 -22.73 12.78 55.43 0.71 -22.03 16 13 Si 0.90 19.64 29.54 -169.99 -5.02 14.62 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 17 C -0.01 -0.26 4.30 -104.62 -0.45 -0.71 16 18 C -0.08 -1.88 8.31 -39.59 -0.33 -2.21 16 19 C -0.13 -2.64 10.05 -39.58 -0.40 -3.04 16 20 C -0.15 -2.76 10.05 -39.58 -0.40 -3.15 16 21 C -0.13 -2.54 10.05 -39.59 -0.40 -2.94 16 22 C -0.12 -2.62 9.67 -39.58 -0.38 -3.00 16 23 C -0.07 -0.88 4.95 -104.65 -0.52 -1.40 16 24 C -0.12 -1.49 9.05 -39.56 -0.36 -1.85 16 25 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 16 26 C -0.15 -1.64 9.99 -39.43 -0.39 -2.04 16 27 C 0.10 1.19 6.71 -39.22 -0.26 0.93 16 28 O -0.50 -5.14 13.50 -19.41 -0.26 -5.40 16 29 C -0.14 -1.70 9.61 -39.44 -0.38 -2.08 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.40 7.08 6.75 -40.82 -0.28 6.80 16 34 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.11 2.49 7.89 -52.49 -0.41 2.08 16 36 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 39 H 0.11 2.34 7.95 -52.49 -0.42 1.92 16 40 H 0.13 1.64 6.91 -52.48 -0.36 1.28 16 41 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.39 2.16 9.06 45.56 0.41 2.57 16 44 H 0.13 1.49 8.03 -52.49 -0.42 1.07 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -29.61 376.42 -9.41 -39.02 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -5.16 Total: 15.79 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -5.17 Total: -21.00 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.44 Total: -35.37 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.18 Total: -18.73 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.61 -9.41 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001448622389.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.096 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds